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PubMed:21810259 JSONTXT

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TEST-CellLine

Id Subject Object Predicate Lexical cue cellosaurus_accession_id
T1 584-591 CellLine denotes C57BL/6 AddedByYayamamo

TEST-DiseaseOrPhenotypicFeature

Id Subject Object Predicate Lexical cue #label
T1 337-347 DiseaseOrPhenotypicFeature denotes depressive DISEASE
T2 377-393 DiseaseOrPhenotypicFeature denotes immunodeficiency DISEASE
T3 434-444 DiseaseOrPhenotypicFeature denotes depressive DISEASE
T4 607-617 DiseaseOrPhenotypicFeature denotes Depressive DISEASE
T5 983-993 DiseaseOrPhenotypicFeature denotes depressive DISEASE
T6 2059-2079 DiseaseOrPhenotypicFeature denotes depressive disorders D003866
T7 2083-2097 DiseaseOrPhenotypicFeature denotes HIV-1-infected DISEASE

TEST-ChemicalEntity

Id Subject Object Predicate Lexical cue ID:
T1 20-47 ChemicalEntity denotes indoleamine 2,3 dioxygenase D050503
T2 212-222 ChemicalEntity denotes tryptophan http://purl.obolibrary.org/obo/CHEBI_57912|http://purl.obolibrary.org/obo/CHEBI_57719|http://purl.obolibrary.org/obo/CHEBI_27897|http://purl.obolibrary.org/obo/CHEBI_16828
T6 240-267 ChemicalEntity denotes indoleamine 2,3 dioxygenase D050503
T7 269-272 ChemicalEntity denotes IDO D050503
T8 508-511 ChemicalEntity denotes IDO D050503
T9 715-718 ChemicalEntity denotes IDO D050503
T10 1097-1100 ChemicalEntity denotes IDO D050503
T11 1348-1369 ChemicalEntity denotes nitric oxide synthase D019001
T12 1385-1394 ChemicalEntity denotes serotonin D012701|http://purl.obolibrary.org/obo/CHEBI_350546|http://purl.obolibrary.org/obo/CHEBI_28790
T15 1507-1510 ChemicalEntity denotes IDO D050503
T16 1609-1618 ChemicalEntity denotes SB 202190 C090942|http://purl.obolibrary.org/obo/CHEBI_79090
T18 1652-1661 ChemicalEntity denotes SB 202190 C090942|http://purl.obolibrary.org/obo/CHEBI_79090
T20 1686-1689 ChemicalEntity denotes IDO D050503
T21 1870-1873 ChemicalEntity denotes IDO D050503
T22 1971-1974 ChemicalEntity denotes IDO D050503

TEST-OrganismTaxon

Id Subject Object Predicate Lexical cue
T1 0-5 OrganismTaxon denotes HIV-1
T2 51-57 OrganismTaxon denotes murine
T3 371-376 OrganismTaxon denotes human
T4 394-399 OrganismTaxon denotes virus
T5 408-413 OrganismTaxon denotes HIV-1
T6 462-466 OrganismTaxon denotes mice
T7 592-596 OrganismTaxon denotes mice
T8 644-648 OrganismTaxon denotes mice
T9 2083-2088 OrganismTaxon denotes HIV-1
T10 2098-2106 OrganismTaxon denotes patients

Test-GeneOrGeneProduct

Id Subject Object Predicate Lexical cue
T1 36-47 GeneOrGeneProduct denotes dioxygenase
T2 102-138 GeneOrGeneProduct denotes p38 mitogen-activated protein kinase
T3 256-267 GeneOrGeneProduct denotes dioxygenase
T4 269-272 GeneOrGeneProduct denotes IDO
T5 415-426 GeneOrGeneProduct denotes Tat protein
T6 508-511 GeneOrGeneProduct denotes IDO
T7 715-718 GeneOrGeneProduct denotes IDO
T8 848-856 GeneOrGeneProduct denotes p38 MAPK
T9 1097-1100 GeneOrGeneProduct denotes IDO
T10 1188-1192 GeneOrGeneProduct denotes IFNγ
T11 1240-1244 GeneOrGeneProduct denotes TNFα
T12 1249-1253 GeneOrGeneProduct denotes IL-6
T13 1348-1369 GeneOrGeneProduct denotes nitric oxide synthase
T14 1371-1375 GeneOrGeneProduct denotes iNOS
T15 1385-1406 GeneOrGeneProduct denotes serotonin transporter
T16 1408-1412 GeneOrGeneProduct denotes SERT
T17 1460-1464 GeneOrGeneProduct denotes IFNγ
T18 1507-1510 GeneOrGeneProduct denotes IDO
T19 1555-1591 GeneOrGeneProduct denotes p38 mitogen-activated protein kinase
T20 1593-1597 GeneOrGeneProduct denotes MAPK
T21 1686-1689 GeneOrGeneProduct denotes IDO
T22 1793-1797 GeneOrGeneProduct denotes TNFα
T23 1799-1803 GeneOrGeneProduct denotes IL-6
T24 1805-1809 GeneOrGeneProduct denotes iNOS
T25 1814-1818 GeneOrGeneProduct denotes SERT
T26 1870-1873 GeneOrGeneProduct denotes IDO
T27 1892-1896 GeneOrGeneProduct denotes IFNγ
T28 1951-1959 GeneOrGeneProduct denotes p38 MAPK
T29 1971-1974 GeneOrGeneProduct denotes IDO
T30 1989-1997 GeneOrGeneProduct denotes p38 MAPK

Test-merged-2

Id Subject Object Predicate Lexical cue #label ID: cellosaurus_accession_id
T81992 584-591 CellLine denotes C57BL/6 AddedByYayamamo
T47207 20-47 ChemicalEntity denotes indoleamine 2,3 dioxygenase D050503
T40192 212-222 ChemicalEntity denotes tryptophan http://purl.obolibrary.org/obo/CHEBI_57912|http://purl.obolibrary.org/obo/CHEBI_57719|http://purl.obolibrary.org/obo/CHEBI_27897|http://purl.obolibrary.org/obo/CHEBI_16828
T35941 240-267 ChemicalEntity denotes indoleamine 2,3 dioxygenase D050503
T24651 269-272 ChemicalEntity denotes IDO D050503
T95167 508-511 ChemicalEntity denotes IDO D050503
T15820 715-718 ChemicalEntity denotes IDO D050503
T79892 1097-1100 ChemicalEntity denotes IDO D050503
T10960 1348-1369 ChemicalEntity denotes nitric oxide synthase D019001
T16874 1385-1394 ChemicalEntity denotes serotonin D012701|http://purl.obolibrary.org/obo/CHEBI_350546|http://purl.obolibrary.org/obo/CHEBI_28790
T50079 1507-1510 ChemicalEntity denotes IDO D050503
T1155 1609-1618 ChemicalEntity denotes SB 202190 C090942|http://purl.obolibrary.org/obo/CHEBI_79090
T73816 1652-1661 ChemicalEntity denotes SB 202190 C090942|http://purl.obolibrary.org/obo/CHEBI_79090
T10324 1686-1689 ChemicalEntity denotes IDO D050503
T83700 1870-1873 ChemicalEntity denotes IDO D050503
T94716 1971-1974 ChemicalEntity denotes IDO D050503
T99469 36-47 GeneOrGeneProduct denotes dioxygenase
T88327 102-138 GeneOrGeneProduct denotes p38 mitogen-activated protein kinase
T89183 256-267 GeneOrGeneProduct denotes dioxygenase
T30093 269-272 GeneOrGeneProduct denotes IDO
T62633 415-426 GeneOrGeneProduct denotes Tat protein
T72407 508-511 GeneOrGeneProduct denotes IDO
T16454 715-718 GeneOrGeneProduct denotes IDO
T75505 848-856 GeneOrGeneProduct denotes p38 MAPK
T49837 1097-1100 GeneOrGeneProduct denotes IDO
T2809 1188-1192 GeneOrGeneProduct denotes IFNγ
T11 1240-1244 GeneOrGeneProduct denotes TNFα
T12 1249-1253 GeneOrGeneProduct denotes IL-6
T13 1348-1369 GeneOrGeneProduct denotes nitric oxide synthase
T14 1371-1375 GeneOrGeneProduct denotes iNOS
T15 1385-1406 GeneOrGeneProduct denotes serotonin transporter
T16 1408-1412 GeneOrGeneProduct denotes SERT
T17 1460-1464 GeneOrGeneProduct denotes IFNγ
T18 1507-1510 GeneOrGeneProduct denotes IDO
T19 1555-1591 GeneOrGeneProduct denotes p38 mitogen-activated protein kinase
T20 1593-1597 GeneOrGeneProduct denotes MAPK
T21 1686-1689 GeneOrGeneProduct denotes IDO
T22 1793-1797 GeneOrGeneProduct denotes TNFα
T23 1799-1803 GeneOrGeneProduct denotes IL-6
T24 1805-1809 GeneOrGeneProduct denotes iNOS
T25 1814-1818 GeneOrGeneProduct denotes SERT
T26 1870-1873 GeneOrGeneProduct denotes IDO
T27 1892-1896 GeneOrGeneProduct denotes IFNγ
T28 1951-1959 GeneOrGeneProduct denotes p38 MAPK
T29 1971-1974 GeneOrGeneProduct denotes IDO
T30 1989-1997 GeneOrGeneProduct denotes p38 MAPK
T75523 0-5 OrganismTaxon denotes HIV-1
T37478 51-57 OrganismTaxon denotes murine
T81453 371-376 OrganismTaxon denotes human
T58038 394-399 OrganismTaxon denotes virus
T40732 408-413 OrganismTaxon denotes HIV-1
T59607 462-466 OrganismTaxon denotes mice
T93751 592-596 OrganismTaxon denotes mice
T8 644-648 OrganismTaxon denotes mice
T9 2083-2088 OrganismTaxon denotes HIV-1
T10 2098-2106 OrganismTaxon denotes patients
T1 337-347 DiseaseOrPhenotypicFeature denotes depressive DISEASE
T2 377-393 DiseaseOrPhenotypicFeature denotes immunodeficiency DISEASE
T3 434-444 DiseaseOrPhenotypicFeature denotes depressive DISEASE
T4 607-617 DiseaseOrPhenotypicFeature denotes Depressive DISEASE
T5 983-993 DiseaseOrPhenotypicFeature denotes depressive DISEASE
T6 2059-2079 DiseaseOrPhenotypicFeature denotes depressive disorders D003866
T7 2083-2097 DiseaseOrPhenotypicFeature denotes HIV-1-infected DISEASE

Test-merged

Id Subject Object Predicate Lexical cue #label ID: cellosaurus_accession_id
T7 2083-2097 DiseaseOrPhenotypicFeature denotes HIV-1-infected DISEASE
T6 2059-2079 DiseaseOrPhenotypicFeature denotes depressive disorders D003866
T5 983-993 DiseaseOrPhenotypicFeature denotes depressive DISEASE
T4 607-617 DiseaseOrPhenotypicFeature denotes Depressive DISEASE
T3 434-444 DiseaseOrPhenotypicFeature denotes depressive DISEASE
T2 377-393 DiseaseOrPhenotypicFeature denotes immunodeficiency DISEASE
T1 337-347 DiseaseOrPhenotypicFeature denotes depressive DISEASE
T10 2098-2106 OrganismTaxon denotes patients
T8 644-648 OrganismTaxon denotes mice
T93751 592-596 OrganismTaxon denotes mice
T59607 462-466 OrganismTaxon denotes mice
T40732 408-413 OrganismTaxon denotes HIV-1
T58038 394-399 OrganismTaxon denotes virus
T81453 371-376 OrganismTaxon denotes human
T37478 51-57 OrganismTaxon denotes murine
T75523 0-5 OrganismTaxon denotes HIV-1
T30 1989-1997 GeneOrGeneProduct denotes p38 MAPK
T28 1951-1959 GeneOrGeneProduct denotes p38 MAPK
T27 1892-1896 GeneOrGeneProduct denotes IFNγ
T25 1814-1818 GeneOrGeneProduct denotes SERT
T24 1805-1809 GeneOrGeneProduct denotes iNOS
T23 1799-1803 GeneOrGeneProduct denotes IL-6
T22 1793-1797 GeneOrGeneProduct denotes TNFα
T20 1593-1597 GeneOrGeneProduct denotes MAPK
T19 1555-1591 GeneOrGeneProduct denotes p38 mitogen-activated protein kinase
T17 1460-1464 GeneOrGeneProduct denotes IFNγ
T16 1408-1412 GeneOrGeneProduct denotes SERT
T15 1385-1406 GeneOrGeneProduct denotes serotonin transporter
T14 1371-1375 GeneOrGeneProduct denotes iNOS
T12 1249-1253 GeneOrGeneProduct denotes IL-6
T11 1240-1244 GeneOrGeneProduct denotes TNFα
T2809 1188-1192 GeneOrGeneProduct denotes IFNγ
T75505 848-856 GeneOrGeneProduct denotes p38 MAPK
T62633 415-426 GeneOrGeneProduct denotes Tat protein
T88327 102-138 GeneOrGeneProduct denotes p38 mitogen-activated protein kinase
T94716 1971-1974 ChemicalEntity denotes IDO D050503
T83700 1870-1873 ChemicalEntity denotes IDO D050503
T10324 1686-1689 ChemicalEntity denotes IDO D050503
T73816 1652-1661 ChemicalEntity denotes SB 202190 http://purl.obolibrary.org/obo/CHEBI_79090|C090942
T1155 1609-1618 ChemicalEntity denotes SB 202190 http://purl.obolibrary.org/obo/CHEBI_79090|C090942
T50079 1507-1510 ChemicalEntity denotes IDO D050503
T10960 1348-1369 ChemicalEntity denotes nitric oxide synthase D019001
T79892 1097-1100 ChemicalEntity denotes IDO D050503
T15820 715-718 ChemicalEntity denotes IDO D050503
T95167 508-511 ChemicalEntity denotes IDO D050503
T24651 269-272 ChemicalEntity denotes IDO D050503
T35941 240-267 ChemicalEntity denotes indoleamine 2,3 dioxygenase D050503
T40192 212-222 ChemicalEntity denotes tryptophan http://purl.obolibrary.org/obo/CHEBI_16828|http://purl.obolibrary.org/obo/CHEBI_27897|http://purl.obolibrary.org/obo/CHEBI_57719|http://purl.obolibrary.org/obo/CHEBI_57912
T47207 20-47 ChemicalEntity denotes indoleamine 2,3 dioxygenase D050503
T81992 584-591 CellLine denotes C57BL/6 AddedByYayamamo

DisGeNET

Id Subject Object Predicate Lexical cue
T0 415-418 gene:6898 denotes Tat
T1 408-411 disease:C0019693 denotes HIV
T2 415-418 gene:79969 denotes Tat
T3 408-411 disease:C0019693 denotes HIV
R1 T0 T1 associated_with Tat,HIV
R2 T2 T3 associated_with Tat,HIV

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 337-347 HP_0000716 denotes depressive
T2 377-393 HP_0002721 denotes immunodeficiency
T3 434-444 HP_0000716 denotes depressive

Allie

Id Subject Object Predicate Lexical cue
SS1_21810259_3_0 371-406 expanded denotes human immunodeficiency virus type 1
SS2_21810259_3_0 408-413 abbr denotes HIV-1
SS1_21810259_3_1 515-553 expanded denotes organotypic hippocampal slice cultures
SS2_21810259_3_1 555-560 abbr denotes OHSCs
SS1_21810259_6_0 803-837 expanded denotes enzyme-linked immunosorbent assays
SS2_21810259_6_0 839-845 abbr denotes ELISAs
SS1_21810259_8_0 912-935 expanded denotes Intracerebroventricular
SS2_21810259_8_0 937-943 abbr denotes i.c.v.
SS1_21810259_11_0 1337-1369 expanded denotes isoform of nitric oxide synthase
SS2_21810259_11_0 1371-1375 abbr denotes iNOS
SS1_21810259_11_1 1385-1406 expanded denotes serotonin transporter
SS2_21810259_11_1 1408-1412 abbr denotes SERT
SS1_21810259_13_0 1559-1591 expanded denotes mitogen-activated protein kinase
SS2_21810259_13_0 1593-1597 abbr denotes MAPK
AE1_21810259_3_0 SS1_21810259_3_0 SS2_21810259_3_0 abbreviatedTo human immunodeficiency virus type 1,HIV-1
AE1_21810259_3_1 SS1_21810259_3_1 SS2_21810259_3_1 abbreviatedTo organotypic hippocampal slice cultures,OHSCs
AE1_21810259_6_0 SS1_21810259_6_0 SS2_21810259_6_0 abbreviatedTo enzyme-linked immunosorbent assays,ELISAs
AE1_21810259_8_0 SS1_21810259_8_0 SS2_21810259_8_0 abbreviatedTo Intracerebroventricular,i.c.v.
AE1_21810259_11_0 SS1_21810259_11_0 SS2_21810259_11_0 abbreviatedTo isoform of nitric oxide synthase,iNOS
AE1_21810259_11_1 SS1_21810259_11_1 SS2_21810259_11_1 abbreviatedTo serotonin transporter,SERT
AE1_21810259_13_0 SS1_21810259_13_0 SS2_21810259_13_0 abbreviatedTo mitogen-activated protein kinase,MAPK

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
21810259-12#28#31#gene10598 1989-1992 gene10598 denotes p38
21810259-12#28#31#gene7965 1989-1992 gene7965 denotes p38
21810259-12#28#31#gene1398 1989-1992 gene1398 denotes p38
21810259-12#28#31#gene9402 1989-1992 gene9402 denotes p38
21810259-12#28#31#gene5594 1989-1992 gene5594 denotes p38
21810259-12#28#31#gene1432 1989-1992 gene1432 denotes p38
21810259-12#28#31#gene26073 1989-1992 gene26073 denotes p38
21810259-12#28#31#gene25897 1989-1992 gene25897 denotes p38
21810259-12#98#118#diseaseC0011581 2059-2079 diseaseC0011581 denotes depressive disorders
21810259-2#52#55#gene6898 415-418 gene6898 denotes Tat
21810259-2#8#36#diseaseC3854222 371-399 diseaseC3854222 denotes human immunodeficiency virus
28#31#gene1059898#118#diseaseC0011581 21810259-12#28#31#gene10598 21810259-12#98#118#diseaseC0011581 associated_with p38,depressive disorders
28#31#gene796598#118#diseaseC0011581 21810259-12#28#31#gene7965 21810259-12#98#118#diseaseC0011581 associated_with p38,depressive disorders
28#31#gene139898#118#diseaseC0011581 21810259-12#28#31#gene1398 21810259-12#98#118#diseaseC0011581 associated_with p38,depressive disorders
28#31#gene940298#118#diseaseC0011581 21810259-12#28#31#gene9402 21810259-12#98#118#diseaseC0011581 associated_with p38,depressive disorders
28#31#gene559498#118#diseaseC0011581 21810259-12#28#31#gene5594 21810259-12#98#118#diseaseC0011581 associated_with p38,depressive disorders
28#31#gene143298#118#diseaseC0011581 21810259-12#28#31#gene1432 21810259-12#98#118#diseaseC0011581 associated_with p38,depressive disorders
28#31#gene2607398#118#diseaseC0011581 21810259-12#28#31#gene26073 21810259-12#98#118#diseaseC0011581 associated_with p38,depressive disorders
28#31#gene2589798#118#diseaseC0011581 21810259-12#28#31#gene25897 21810259-12#98#118#diseaseC0011581 associated_with p38,depressive disorders
52#55#gene68988#36#diseaseC3854222 21810259-2#52#55#gene6898 21810259-2#8#36#diseaseC3854222 associated_with Tat,human immunodeficiency virus