PubMed:21810259
Annnotations
TEST-CellLine
| Id | Subject | Object | Predicate | Lexical cue | cellosaurus_accession_id |
|---|---|---|---|---|---|
| T1 | 584-591 | CellLine | denotes | C57BL/6 | AddedByYayamamo |
TEST-DiseaseOrPhenotypicFeature
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T1 | 337-347 | DiseaseOrPhenotypicFeature | denotes | depressive | DISEASE |
| T2 | 377-393 | DiseaseOrPhenotypicFeature | denotes | immunodeficiency | DISEASE |
| T3 | 434-444 | DiseaseOrPhenotypicFeature | denotes | depressive | DISEASE |
| T4 | 607-617 | DiseaseOrPhenotypicFeature | denotes | Depressive | DISEASE |
| T5 | 983-993 | DiseaseOrPhenotypicFeature | denotes | depressive | DISEASE |
| T6 | 2059-2079 | DiseaseOrPhenotypicFeature | denotes | depressive disorders | D003866 |
| T7 | 2083-2097 | DiseaseOrPhenotypicFeature | denotes | HIV-1-infected | DISEASE |
TEST-ChemicalEntity
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T1 | 20-47 | ChemicalEntity | denotes | indoleamine 2,3 dioxygenase | D050503 |
| T2 | 212-222 | ChemicalEntity | denotes | tryptophan | http://purl.obolibrary.org/obo/CHEBI_57912|http://purl.obolibrary.org/obo/CHEBI_57719|http://purl.obolibrary.org/obo/CHEBI_27897|http://purl.obolibrary.org/obo/CHEBI_16828 |
| T6 | 240-267 | ChemicalEntity | denotes | indoleamine 2,3 dioxygenase | D050503 |
| T7 | 269-272 | ChemicalEntity | denotes | IDO | D050503 |
| T8 | 508-511 | ChemicalEntity | denotes | IDO | D050503 |
| T9 | 715-718 | ChemicalEntity | denotes | IDO | D050503 |
| T10 | 1097-1100 | ChemicalEntity | denotes | IDO | D050503 |
| T11 | 1348-1369 | ChemicalEntity | denotes | nitric oxide synthase | D019001 |
| T12 | 1385-1394 | ChemicalEntity | denotes | serotonin | D012701|http://purl.obolibrary.org/obo/CHEBI_350546|http://purl.obolibrary.org/obo/CHEBI_28790 |
| T15 | 1507-1510 | ChemicalEntity | denotes | IDO | D050503 |
| T16 | 1609-1618 | ChemicalEntity | denotes | SB 202190 | C090942|http://purl.obolibrary.org/obo/CHEBI_79090 |
| T18 | 1652-1661 | ChemicalEntity | denotes | SB 202190 | C090942|http://purl.obolibrary.org/obo/CHEBI_79090 |
| T20 | 1686-1689 | ChemicalEntity | denotes | IDO | D050503 |
| T21 | 1870-1873 | ChemicalEntity | denotes | IDO | D050503 |
| T22 | 1971-1974 | ChemicalEntity | denotes | IDO | D050503 |
TEST-OrganismTaxon
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-5 | OrganismTaxon | denotes | HIV-1 |
| T2 | 51-57 | OrganismTaxon | denotes | murine |
| T3 | 371-376 | OrganismTaxon | denotes | human |
| T4 | 394-399 | OrganismTaxon | denotes | virus |
| T5 | 408-413 | OrganismTaxon | denotes | HIV-1 |
| T6 | 462-466 | OrganismTaxon | denotes | mice |
| T7 | 592-596 | OrganismTaxon | denotes | mice |
| T8 | 644-648 | OrganismTaxon | denotes | mice |
| T9 | 2083-2088 | OrganismTaxon | denotes | HIV-1 |
| T10 | 2098-2106 | OrganismTaxon | denotes | patients |
Test-GeneOrGeneProduct
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 36-47 | GeneOrGeneProduct | denotes | dioxygenase |
| T2 | 102-138 | GeneOrGeneProduct | denotes | p38 mitogen-activated protein kinase |
| T3 | 256-267 | GeneOrGeneProduct | denotes | dioxygenase |
| T4 | 269-272 | GeneOrGeneProduct | denotes | IDO |
| T5 | 415-426 | GeneOrGeneProduct | denotes | Tat protein |
| T6 | 508-511 | GeneOrGeneProduct | denotes | IDO |
| T7 | 715-718 | GeneOrGeneProduct | denotes | IDO |
| T8 | 848-856 | GeneOrGeneProduct | denotes | p38 MAPK |
| T9 | 1097-1100 | GeneOrGeneProduct | denotes | IDO |
| T10 | 1188-1192 | GeneOrGeneProduct | denotes | IFNγ |
| T11 | 1240-1244 | GeneOrGeneProduct | denotes | TNFα |
| T12 | 1249-1253 | GeneOrGeneProduct | denotes | IL-6 |
| T13 | 1348-1369 | GeneOrGeneProduct | denotes | nitric oxide synthase |
| T14 | 1371-1375 | GeneOrGeneProduct | denotes | iNOS |
| T15 | 1385-1406 | GeneOrGeneProduct | denotes | serotonin transporter |
| T16 | 1408-1412 | GeneOrGeneProduct | denotes | SERT |
| T17 | 1460-1464 | GeneOrGeneProduct | denotes | IFNγ |
| T18 | 1507-1510 | GeneOrGeneProduct | denotes | IDO |
| T19 | 1555-1591 | GeneOrGeneProduct | denotes | p38 mitogen-activated protein kinase |
| T20 | 1593-1597 | GeneOrGeneProduct | denotes | MAPK |
| T21 | 1686-1689 | GeneOrGeneProduct | denotes | IDO |
| T22 | 1793-1797 | GeneOrGeneProduct | denotes | TNFα |
| T23 | 1799-1803 | GeneOrGeneProduct | denotes | IL-6 |
| T24 | 1805-1809 | GeneOrGeneProduct | denotes | iNOS |
| T25 | 1814-1818 | GeneOrGeneProduct | denotes | SERT |
| T26 | 1870-1873 | GeneOrGeneProduct | denotes | IDO |
| T27 | 1892-1896 | GeneOrGeneProduct | denotes | IFNγ |
| T28 | 1951-1959 | GeneOrGeneProduct | denotes | p38 MAPK |
| T29 | 1971-1974 | GeneOrGeneProduct | denotes | IDO |
| T30 | 1989-1997 | GeneOrGeneProduct | denotes | p38 MAPK |
Test-merged-2
| Id | Subject | Object | Predicate | Lexical cue | #label | ID: | cellosaurus_accession_id |
|---|---|---|---|---|---|---|---|
| T81992 | 584-591 | CellLine | denotes | C57BL/6 | AddedByYayamamo | ||
| T47207 | 20-47 | ChemicalEntity | denotes | indoleamine 2,3 dioxygenase | D050503 | ||
| T40192 | 212-222 | ChemicalEntity | denotes | tryptophan | http://purl.obolibrary.org/obo/CHEBI_57912|http://purl.obolibrary.org/obo/CHEBI_57719|http://purl.obolibrary.org/obo/CHEBI_27897|http://purl.obolibrary.org/obo/CHEBI_16828 | ||
| T35941 | 240-267 | ChemicalEntity | denotes | indoleamine 2,3 dioxygenase | D050503 | ||
| T24651 | 269-272 | ChemicalEntity | denotes | IDO | D050503 | ||
| T95167 | 508-511 | ChemicalEntity | denotes | IDO | D050503 | ||
| T15820 | 715-718 | ChemicalEntity | denotes | IDO | D050503 | ||
| T79892 | 1097-1100 | ChemicalEntity | denotes | IDO | D050503 | ||
| T10960 | 1348-1369 | ChemicalEntity | denotes | nitric oxide synthase | D019001 | ||
| T16874 | 1385-1394 | ChemicalEntity | denotes | serotonin | D012701|http://purl.obolibrary.org/obo/CHEBI_350546|http://purl.obolibrary.org/obo/CHEBI_28790 | ||
| T50079 | 1507-1510 | ChemicalEntity | denotes | IDO | D050503 | ||
| T1155 | 1609-1618 | ChemicalEntity | denotes | SB 202190 | C090942|http://purl.obolibrary.org/obo/CHEBI_79090 | ||
| T73816 | 1652-1661 | ChemicalEntity | denotes | SB 202190 | C090942|http://purl.obolibrary.org/obo/CHEBI_79090 | ||
| T10324 | 1686-1689 | ChemicalEntity | denotes | IDO | D050503 | ||
| T83700 | 1870-1873 | ChemicalEntity | denotes | IDO | D050503 | ||
| T94716 | 1971-1974 | ChemicalEntity | denotes | IDO | D050503 | ||
| T99469 | 36-47 | GeneOrGeneProduct | denotes | dioxygenase | |||
| T88327 | 102-138 | GeneOrGeneProduct | denotes | p38 mitogen-activated protein kinase | |||
| T89183 | 256-267 | GeneOrGeneProduct | denotes | dioxygenase | |||
| T30093 | 269-272 | GeneOrGeneProduct | denotes | IDO | |||
| T62633 | 415-426 | GeneOrGeneProduct | denotes | Tat protein | |||
| T72407 | 508-511 | GeneOrGeneProduct | denotes | IDO | |||
| T16454 | 715-718 | GeneOrGeneProduct | denotes | IDO | |||
| T75505 | 848-856 | GeneOrGeneProduct | denotes | p38 MAPK | |||
| T49837 | 1097-1100 | GeneOrGeneProduct | denotes | IDO | |||
| T2809 | 1188-1192 | GeneOrGeneProduct | denotes | IFNγ | |||
| T11 | 1240-1244 | GeneOrGeneProduct | denotes | TNFα | |||
| T12 | 1249-1253 | GeneOrGeneProduct | denotes | IL-6 | |||
| T13 | 1348-1369 | GeneOrGeneProduct | denotes | nitric oxide synthase | |||
| T14 | 1371-1375 | GeneOrGeneProduct | denotes | iNOS | |||
| T15 | 1385-1406 | GeneOrGeneProduct | denotes | serotonin transporter | |||
| T16 | 1408-1412 | GeneOrGeneProduct | denotes | SERT | |||
| T17 | 1460-1464 | GeneOrGeneProduct | denotes | IFNγ | |||
| T18 | 1507-1510 | GeneOrGeneProduct | denotes | IDO | |||
| T19 | 1555-1591 | GeneOrGeneProduct | denotes | p38 mitogen-activated protein kinase | |||
| T20 | 1593-1597 | GeneOrGeneProduct | denotes | MAPK | |||
| T21 | 1686-1689 | GeneOrGeneProduct | denotes | IDO | |||
| T22 | 1793-1797 | GeneOrGeneProduct | denotes | TNFα | |||
| T23 | 1799-1803 | GeneOrGeneProduct | denotes | IL-6 | |||
| T24 | 1805-1809 | GeneOrGeneProduct | denotes | iNOS | |||
| T25 | 1814-1818 | GeneOrGeneProduct | denotes | SERT | |||
| T26 | 1870-1873 | GeneOrGeneProduct | denotes | IDO | |||
| T27 | 1892-1896 | GeneOrGeneProduct | denotes | IFNγ | |||
| T28 | 1951-1959 | GeneOrGeneProduct | denotes | p38 MAPK | |||
| T29 | 1971-1974 | GeneOrGeneProduct | denotes | IDO | |||
| T30 | 1989-1997 | GeneOrGeneProduct | denotes | p38 MAPK | |||
| T75523 | 0-5 | OrganismTaxon | denotes | HIV-1 | |||
| T37478 | 51-57 | OrganismTaxon | denotes | murine | |||
| T81453 | 371-376 | OrganismTaxon | denotes | human | |||
| T58038 | 394-399 | OrganismTaxon | denotes | virus | |||
| T40732 | 408-413 | OrganismTaxon | denotes | HIV-1 | |||
| T59607 | 462-466 | OrganismTaxon | denotes | mice | |||
| T93751 | 592-596 | OrganismTaxon | denotes | mice | |||
| T8 | 644-648 | OrganismTaxon | denotes | mice | |||
| T9 | 2083-2088 | OrganismTaxon | denotes | HIV-1 | |||
| T10 | 2098-2106 | OrganismTaxon | denotes | patients | |||
| T1 | 337-347 | DiseaseOrPhenotypicFeature | denotes | depressive | DISEASE | ||
| T2 | 377-393 | DiseaseOrPhenotypicFeature | denotes | immunodeficiency | DISEASE | ||
| T3 | 434-444 | DiseaseOrPhenotypicFeature | denotes | depressive | DISEASE | ||
| T4 | 607-617 | DiseaseOrPhenotypicFeature | denotes | Depressive | DISEASE | ||
| T5 | 983-993 | DiseaseOrPhenotypicFeature | denotes | depressive | DISEASE | ||
| T6 | 2059-2079 | DiseaseOrPhenotypicFeature | denotes | depressive disorders | D003866 | ||
| T7 | 2083-2097 | DiseaseOrPhenotypicFeature | denotes | HIV-1-infected | DISEASE |
DisGeNET
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T0 | 415-418 | gene:6898 | denotes | Tat |
| T1 | 408-411 | disease:C0019693 | denotes | HIV |
| T2 | 415-418 | gene:79969 | denotes | Tat |
| T3 | 408-411 | disease:C0019693 | denotes | HIV |
| R1 | T0 | T1 | associated_with | Tat,HIV |
| R2 | T2 | T3 | associated_with | Tat,HIV |
PubmedHPO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 337-347 | HP_0000716 | denotes | depressive |
| T2 | 377-393 | HP_0002721 | denotes | immunodeficiency |
| T3 | 434-444 | HP_0000716 | denotes | depressive |
Allie
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| SS1_21810259_3_0 | 371-406 | expanded | denotes | human immunodeficiency virus type 1 |
| SS2_21810259_3_0 | 408-413 | abbr | denotes | HIV-1 |
| SS1_21810259_3_1 | 515-553 | expanded | denotes | organotypic hippocampal slice cultures |
| SS2_21810259_3_1 | 555-560 | abbr | denotes | OHSCs |
| SS1_21810259_6_0 | 803-837 | expanded | denotes | enzyme-linked immunosorbent assays |
| SS2_21810259_6_0 | 839-845 | abbr | denotes | ELISAs |
| SS1_21810259_8_0 | 912-935 | expanded | denotes | Intracerebroventricular |
| SS2_21810259_8_0 | 937-943 | abbr | denotes | i.c.v. |
| SS1_21810259_11_0 | 1337-1369 | expanded | denotes | isoform of nitric oxide synthase |
| SS2_21810259_11_0 | 1371-1375 | abbr | denotes | iNOS |
| SS1_21810259_11_1 | 1385-1406 | expanded | denotes | serotonin transporter |
| SS2_21810259_11_1 | 1408-1412 | abbr | denotes | SERT |
| SS1_21810259_13_0 | 1559-1591 | expanded | denotes | mitogen-activated protein kinase |
| SS2_21810259_13_0 | 1593-1597 | abbr | denotes | MAPK |
| AE1_21810259_3_0 | SS1_21810259_3_0 | SS2_21810259_3_0 | abbreviatedTo | human immunodeficiency virus type 1,HIV-1 |
| AE1_21810259_3_1 | SS1_21810259_3_1 | SS2_21810259_3_1 | abbreviatedTo | organotypic hippocampal slice cultures,OHSCs |
| AE1_21810259_6_0 | SS1_21810259_6_0 | SS2_21810259_6_0 | abbreviatedTo | enzyme-linked immunosorbent assays,ELISAs |
| AE1_21810259_8_0 | SS1_21810259_8_0 | SS2_21810259_8_0 | abbreviatedTo | Intracerebroventricular,i.c.v. |
| AE1_21810259_11_0 | SS1_21810259_11_0 | SS2_21810259_11_0 | abbreviatedTo | isoform of nitric oxide synthase,iNOS |
| AE1_21810259_11_1 | SS1_21810259_11_1 | SS2_21810259_11_1 | abbreviatedTo | serotonin transporter,SERT |
| AE1_21810259_13_0 | SS1_21810259_13_0 | SS2_21810259_13_0 | abbreviatedTo | mitogen-activated protein kinase,MAPK |
DisGeNET5_gene_disease
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 21810259-12#28#31#gene10598 | 1989-1992 | gene10598 | denotes | p38 |
| 21810259-12#28#31#gene7965 | 1989-1992 | gene7965 | denotes | p38 |
| 21810259-12#28#31#gene1398 | 1989-1992 | gene1398 | denotes | p38 |
| 21810259-12#28#31#gene9402 | 1989-1992 | gene9402 | denotes | p38 |
| 21810259-12#28#31#gene5594 | 1989-1992 | gene5594 | denotes | p38 |
| 21810259-12#28#31#gene1432 | 1989-1992 | gene1432 | denotes | p38 |
| 21810259-12#28#31#gene26073 | 1989-1992 | gene26073 | denotes | p38 |
| 21810259-12#28#31#gene25897 | 1989-1992 | gene25897 | denotes | p38 |
| 21810259-12#98#118#diseaseC0011581 | 2059-2079 | diseaseC0011581 | denotes | depressive disorders |
| 21810259-2#52#55#gene6898 | 415-418 | gene6898 | denotes | Tat |
| 21810259-2#8#36#diseaseC3854222 | 371-399 | diseaseC3854222 | denotes | human immunodeficiency virus |
| 28#31#gene1059898#118#diseaseC0011581 | 21810259-12#28#31#gene10598 | 21810259-12#98#118#diseaseC0011581 | associated_with | p38,depressive disorders |
| 28#31#gene796598#118#diseaseC0011581 | 21810259-12#28#31#gene7965 | 21810259-12#98#118#diseaseC0011581 | associated_with | p38,depressive disorders |
| 28#31#gene139898#118#diseaseC0011581 | 21810259-12#28#31#gene1398 | 21810259-12#98#118#diseaseC0011581 | associated_with | p38,depressive disorders |
| 28#31#gene940298#118#diseaseC0011581 | 21810259-12#28#31#gene9402 | 21810259-12#98#118#diseaseC0011581 | associated_with | p38,depressive disorders |
| 28#31#gene559498#118#diseaseC0011581 | 21810259-12#28#31#gene5594 | 21810259-12#98#118#diseaseC0011581 | associated_with | p38,depressive disorders |
| 28#31#gene143298#118#diseaseC0011581 | 21810259-12#28#31#gene1432 | 21810259-12#98#118#diseaseC0011581 | associated_with | p38,depressive disorders |
| 28#31#gene2607398#118#diseaseC0011581 | 21810259-12#28#31#gene26073 | 21810259-12#98#118#diseaseC0011581 | associated_with | p38,depressive disorders |
| 28#31#gene2589798#118#diseaseC0011581 | 21810259-12#28#31#gene25897 | 21810259-12#98#118#diseaseC0011581 | associated_with | p38,depressive disorders |
| 52#55#gene68988#36#diseaseC3854222 | 21810259-2#52#55#gene6898 | 21810259-2#8#36#diseaseC3854222 | associated_with | Tat,human immunodeficiency virus |