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OryzaGP_2022

{"project":"OryzaGP_2022","denotations":[{"id":"T1","span":{"begin":111,"end":127},"obj":"http://identifiers.org/oryzabase.gene/8410"},{"id":"T2","span":{"begin":213,"end":225},"obj":"http://identifiers.org/oryzabase.gene/20868"},{"id":"T3","span":{"begin":213,"end":225},"obj":"http://identifiers.org/oryzabase.gene/20867"},{"id":"T4","span":{"begin":213,"end":225},"obj":"http://identifiers.org/oryzabase.gene/20866"},{"id":"T5","span":{"begin":890,"end":911},"obj":"http://identifiers.org/oryzabase.gene/14695"}],"text":"A chimeric gene containing the 5' portion of atp6 is associated with cytoplasmic male-sterility of rice.\nThree ATPase subunit 6 (atp6) genes of rice mitochondria were isolated, one from normal and two from cms-Bo male-sterile cytoplasms, in order to determine whether the extra atp6 gene in cms-Bo rice plays a role in cytoplasmic male-sterility (CMS). The nucleotide sequences of all three genes were determined and analysis showed a chimeric atp6 gene (urf-rmc) as well as a normal atp6 gene in cms-Bo cytoplasm, but only the normal atp6 gene in normal cytoplasm. The urf-rmc gene is completely homologous to the normal atp6 gene from at least position -426 in the 5' flanking region to position +511 downstream from the initiation codon ATG: however, the following downstream sequence shows no homology with the normal rice atp6 gene, or any other reported sequence. Introduction of the restorer of fertility gene altered transcription of the urf-rmc gene but not the atp6 gene, indicating participation of the chimeric gene in the expression of CMS. Southern blot analysis showed that the urf-rmc gene was generated by an intramolecular recombination event in mitochondrial DNA, and the homologous recombination point between the atp6 gene and the opposite ancestral sequence was identified as 5'-TTCCCTC-3'."}

OryzaGP_2021_v2

OryzaGP_2021_FLAIR

{"project":"OryzaGP_2021_FLAIR","denotations":[{"id":"M_0","span":{"begin":455,"end":458},"obj":"hunflair:NA:Gene"},{"id":"M_1","span":{"begin":570,"end":573},"obj":"hunflair:NA:Gene"},{"id":"M_2","span":{"begin":946,"end":949},"obj":"hunflair:NA:Gene"},{"id":"M_3","span":{"begin":1093,"end":1096},"obj":"hunflair:NA:Gene"},{"id":"M_4","span":{"begin":278,"end":287},"obj":"hunflair:NA:Gene"},{"id":"M_5","span":{"begin":444,"end":453},"obj":"hunflair:NA:Gene"},{"id":"M_6","span":{"begin":484,"end":493},"obj":"hunflair:NA:Gene"},{"id":"M_7","span":{"begin":535,"end":544},"obj":"hunflair:NA:Gene"},{"id":"M_8","span":{"begin":622,"end":631},"obj":"hunflair:NA:Gene"},{"id":"M_9","span":{"begin":827,"end":836},"obj":"hunflair:NA:Gene"},{"id":"M_10","span":{"begin":971,"end":980},"obj":"hunflair:NA:Gene"},{"id":"M_11","span":{"begin":1234,"end":1243},"obj":"hunflair:NA:Gene"},{"id":"M_12","span":{"begin":347,"end":350},"obj":"hunflair:NA:Gene"},{"id":"M_13","span":{"begin":1049,"end":1052},"obj":"hunflair:NA:Gene"},{"id":"M_14","span":{"begin":459,"end":462},"obj":"hunflair:NA:Gene"},{"id":"M_15","span":{"begin":574,"end":577},"obj":"hunflair:NA:Gene"},{"id":"M_16","span":{"begin":950,"end":953},"obj":"hunflair:NA:Gene"},{"id":"M_17","span":{"begin":1097,"end":1100},"obj":"hunflair:NA:Gene"},{"id":"M_18","span":{"begin":99,"end":103},"obj":"hunflair:NA:Species"},{"id":"M_19","span":{"begin":144,"end":148},"obj":"hunflair:NA:Species"},{"id":"M_20","span":{"begin":298,"end":302},"obj":"hunflair:NA:Species"},{"id":"M_21","span":{"begin":822,"end":826},"obj":"hunflair:NA:Species"},{"id":"M_22","span":{"begin":111,"end":127},"obj":"hunflair:NA:Gene"},{"id":"M_23","span":{"begin":435,"end":453},"obj":"hunflair:NA:Gene"},{"id":"M_24","span":{"begin":822,"end":836},"obj":"hunflair:NA:Gene"},{"id":"M_25","span":{"begin":45,"end":49},"obj":"hunflair:NA:Gene"},{"id":"M_26","span":{"begin":129,"end":133},"obj":"hunflair:NA:Gene"},{"id":"M_27","span":{"begin":278,"end":282},"obj":"hunflair:NA:Gene"},{"id":"M_28","span":{"begin":444,"end":448},"obj":"hunflair:NA:Gene"},{"id":"M_29","span":{"begin":484,"end":488},"obj":"hunflair:NA:Gene"},{"id":"M_30","span":{"begin":535,"end":539},"obj":"hunflair:NA:Gene"},{"id":"M_31","span":{"begin":622,"end":626},"obj":"hunflair:NA:Gene"},{"id":"M_32","span":{"begin":827,"end":831},"obj":"hunflair:NA:Gene"},{"id":"M_33","span":{"begin":971,"end":975},"obj":"hunflair:NA:Gene"},{"id":"M_34","span":{"begin":1234,"end":1238},"obj":"hunflair:NA:Gene"},{"id":"M_35","span":{"begin":347,"end":350},"obj":"hunflair:NA:Disease"},{"id":"M_36","span":{"begin":1049,"end":1052},"obj":"hunflair:NA:Disease"}],"text":"A chimeric gene containing the 5' portion of atp6 is associated with cytoplasmic male-sterility of rice.\nThree ATPase subunit 6 (atp6) genes of rice mitochondria were isolated, one from normal and two from cms-Bo male-sterile cytoplasms, in order to determine whether the extra atp6 gene in cms-Bo rice plays a role in cytoplasmic male-sterility (CMS). The nucleotide sequences of all three genes were determined and analysis showed a chimeric atp6 gene (urf-rmc) as well as a normal atp6 gene in cms-Bo cytoplasm, but only the normal atp6 gene in normal cytoplasm. The urf-rmc gene is completely homologous to the normal atp6 gene from at least position -426 in the 5' flanking region to position +511 downstream from the initiation codon ATG: however, the following downstream sequence shows no homology with the normal rice atp6 gene, or any other reported sequence. Introduction of the restorer of fertility gene altered transcription of the urf-rmc gene but not the atp6 gene, indicating participation of the chimeric gene in the expression of CMS. Southern blot analysis showed that the urf-rmc gene was generated by an intramolecular recombination event in mitochondrial DNA, and the homologous recombination point between the atp6 gene and the opposite ancestral sequence was identified as 5'-TTCCCTC-3'."}

OryzaGP_2021

PubmedHPO

{"project":"PubmedHPO","denotations":[{"id":"T1","span":{"begin":1164,"end":1177},"obj":"HP_0001427"}],"text":"A chimeric gene containing the 5' portion of atp6 is associated with cytoplasmic male-sterility of rice.\nThree ATPase subunit 6 (atp6) genes of rice mitochondria were isolated, one from normal and two from cms-Bo male-sterile cytoplasms, in order to determine whether the extra atp6 gene in cms-Bo rice plays a role in cytoplasmic male-sterility (CMS). The nucleotide sequences of all three genes were determined and analysis showed a chimeric atp6 gene (urf-rmc) as well as a normal atp6 gene in cms-Bo cytoplasm, but only the normal atp6 gene in normal cytoplasm. The urf-rmc gene is completely homologous to the normal atp6 gene from at least position -426 in the 5' flanking region to position +511 downstream from the initiation codon ATG: however, the following downstream sequence shows no homology with the normal rice atp6 gene, or any other reported sequence. Introduction of the restorer of fertility gene altered transcription of the urf-rmc gene but not the atp6 gene, indicating participation of the chimeric gene in the expression of CMS. Southern blot analysis showed that the urf-rmc gene was generated by an intramolecular recombination event in mitochondrial DNA, and the homologous recombination point between the atp6 gene and the opposite ancestral sequence was identified as 5'-TTCCCTC-3'."}

OryzaGP

{"project":"OryzaGP","denotations":[{"id":"T1","span":{"begin":45,"end":49},"obj":"gene"},{"id":"T2","span":{"begin":444,"end":448},"obj":"gene"},{"id":"T3","span":{"begin":484,"end":488},"obj":"gene"},{"id":"T4","span":{"begin":497,"end":503},"obj":"gene"},{"id":"T5","span":{"begin":535,"end":626},"obj":"gene"}],"text":"A chimeric gene containing the 5' portion of atp6 is associated with cytoplasmic male-sterility of rice.\nThree ATPase subunit 6 (atp6) genes of rice mitochondria were isolated, one from normal and two from cms-Bo male-sterile cytoplasms, in order to determine whether the extra atp6 gene in cms-Bo rice plays a role in cytoplasmic male-sterility (CMS). The nucleotide sequences of all three genes were determined and analysis showed a chimeric atp6 gene (urf-rmc) as well as a normal atp6 gene in cms-Bo cytoplasm, but only the normal atp6 gene in normal cytoplasm. The urf-rmc gene is completely homologous to the normal atp6 gene from at least position -426 in the 5' flanking region to position +511 downstream from the initiation codon ATG: however, the following downstream sequence shows no homology with the normal rice atp6 gene, or any other reported sequence. Introduction of the restorer of fertility gene altered transcription of the urf-rmc gene but not the atp6 gene, indicating participation of the chimeric gene in the expression of CMS. Southern blot analysis showed that the urf-rmc gene was generated by an intramolecular recombination event in mitochondrial DNA, and the homologous recombination point between the atp6 gene and the opposite ancestral sequence was identified as 5'-TTCCCTC-3'."}

Oryza_sentences

{"project":"Oryza_sentences","blocks":[{"id":"T1","span":{"begin":0,"end":104},"obj":"Sentence"},{"id":"T2","span":{"begin":105,"end":352},"obj":"Sentence"},{"id":"T3","span":{"begin":353,"end":565},"obj":"Sentence"},{"id":"T4","span":{"begin":566,"end":869},"obj":"Sentence"},{"id":"T5","span":{"begin":870,"end":1053},"obj":"Sentence"},{"id":"T6","span":{"begin":1054,"end":1312},"obj":"Sentence"}],"text":"A chimeric gene containing the 5' portion of atp6 is associated with cytoplasmic male-sterility of rice.\nThree ATPase subunit 6 (atp6) genes of rice mitochondria were isolated, one from normal and two from cms-Bo male-sterile cytoplasms, in order to determine whether the extra atp6 gene in cms-Bo rice plays a role in cytoplasmic male-sterility (CMS). The nucleotide sequences of all three genes were determined and analysis showed a chimeric atp6 gene (urf-rmc) as well as a normal atp6 gene in cms-Bo cytoplasm, but only the normal atp6 gene in normal cytoplasm. The urf-rmc gene is completely homologous to the normal atp6 gene from at least position -426 in the 5' flanking region to position +511 downstream from the initiation codon ATG: however, the following downstream sequence shows no homology with the normal rice atp6 gene, or any other reported sequence. Introduction of the restorer of fertility gene altered transcription of the urf-rmc gene but not the atp6 gene, indicating participation of the chimeric gene in the expression of CMS. Southern blot analysis showed that the urf-rmc gene was generated by an intramolecular recombination event in mitochondrial DNA, and the homologous recombination point between the atp6 gene and the opposite ancestral sequence was identified as 5'-TTCCCTC-3'."}