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PubMed:2148966 JSONTXT

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OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 111-127 http://identifiers.org/oryzabase.gene/8410 denotes ATPase subunit 6
T2 213-225 http://identifiers.org/oryzabase.gene/20868 denotes male-sterile
T3 213-225 http://identifiers.org/oryzabase.gene/20867 denotes male-sterile
T4 213-225 http://identifiers.org/oryzabase.gene/20866 denotes male-sterile
T5 890-911 http://identifiers.org/oryzabase.gene/14695 denotes restorer of fertility

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 45-49 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T2 45-49 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T3 129-133 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T4 129-133 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T5 206-212 http://identifiers.org/oryzabase.gene/4 denotes cms-Bo
T6 278-282 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T7 278-282 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T8 291-297 http://identifiers.org/oryzabase.gene/4 denotes cms-Bo
T9 347-350 http://identifiers.org/oryzabase.gene/14684 denotes CMS
T10 444-448 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T11 444-448 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T12 484-488 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T13 484-488 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T14 497-503 http://identifiers.org/oryzabase.gene/4 denotes cms-Bo
T15 535-539 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T16 535-539 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T17 622-626 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T18 622-626 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T19 827-831 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T20 827-831 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T21 971-975 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T22 971-975 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T23 1049-1052 http://identifiers.org/oryzabase.gene/14684 denotes CMS
T24 1234-1238 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T25 1234-1238 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T63403 45-49 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T4069 129-133 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T72620 278-282 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T36981 347-350 http://identifiers.org/rapdb.locus/Os01g0887100 denotes CMS
T42429 444-448 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T32690 484-488 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T91826 535-539 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T92789 622-626 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T50295 827-831 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T4836 971-975 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T40363 1049-1052 http://identifiers.org/rapdb.locus/Os01g0887100 denotes CMS
T83154 1234-1238 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 455-458 hunflair:NA:Gene denotes urf
M_1 570-573 hunflair:NA:Gene denotes urf
M_2 946-949 hunflair:NA:Gene denotes urf
M_3 1093-1096 hunflair:NA:Gene denotes urf
M_4 278-287 hunflair:NA:Gene denotes atp6 gene
M_5 444-453 hunflair:NA:Gene denotes atp6 gene
M_6 484-493 hunflair:NA:Gene denotes atp6 gene
M_7 535-544 hunflair:NA:Gene denotes atp6 gene
M_8 622-631 hunflair:NA:Gene denotes atp6 gene
M_9 827-836 hunflair:NA:Gene denotes atp6 gene
M_10 971-980 hunflair:NA:Gene denotes atp6 gene
M_11 1234-1243 hunflair:NA:Gene denotes atp6 gene
M_12 347-350 hunflair:NA:Gene denotes CMS
M_13 1049-1052 hunflair:NA:Gene denotes CMS
M_14 459-462 hunflair:NA:Gene denotes rmc
M_15 574-577 hunflair:NA:Gene denotes rmc
M_16 950-953 hunflair:NA:Gene denotes rmc
M_17 1097-1100 hunflair:NA:Gene denotes rmc
M_18 99-103 hunflair:NA:Species denotes rice
M_19 144-148 hunflair:NA:Species denotes rice
M_20 298-302 hunflair:NA:Species denotes rice
M_21 822-826 hunflair:NA:Species denotes rice
M_22 111-127 hunflair:NA:Gene denotes ATPase subunit 6
M_23 435-453 hunflair:NA:Gene denotes chimeric atp6 gene
M_24 822-836 hunflair:NA:Gene denotes rice atp6 gene
M_25 45-49 hunflair:NA:Gene denotes atp6
M_26 129-133 hunflair:NA:Gene denotes atp6
M_27 278-282 hunflair:NA:Gene denotes atp6
M_28 444-448 hunflair:NA:Gene denotes atp6
M_29 484-488 hunflair:NA:Gene denotes atp6
M_30 535-539 hunflair:NA:Gene denotes atp6
M_31 622-626 hunflair:NA:Gene denotes atp6
M_32 827-831 hunflair:NA:Gene denotes atp6
M_33 971-975 hunflair:NA:Gene denotes atp6
M_34 1234-1238 hunflair:NA:Gene denotes atp6
M_35 347-350 hunflair:NA:Disease denotes CMS
M_36 1049-1052 hunflair:NA:Disease denotes CMS

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 45-49 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T2 45-49 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T3 45-49 http://identifiers.org/oryzabase.gene/8089 denotes atp6
T4 111-127 http://identifiers.org/oryzabase.gene/8089 denotes ATPase subunit 6
T5 111-127 http://identifiers.org/oryzabase.gene/14124 denotes ATPase subunit 6
T6 129-133 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T7 129-133 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T8 129-133 http://identifiers.org/oryzabase.gene/8089 denotes atp6
T9 206-209 http://identifiers.org/oryzabase.gene/14684 denotes cms
T10 278-282 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T11 278-282 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T12 278-282 http://identifiers.org/oryzabase.gene/8089 denotes atp6
T13 291-294 http://identifiers.org/oryzabase.gene/14684 denotes cms
T14 347-350 http://identifiers.org/oryzabase.gene/14684 denotes CMS
T15 444-448 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T16 444-448 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T17 444-448 http://identifiers.org/oryzabase.gene/8089 denotes atp6
T18 459-462 http://identifiers.org/oryzabase.gene/10887 denotes rmc
T19 484-488 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T20 484-488 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T21 484-488 http://identifiers.org/oryzabase.gene/8089 denotes atp6
T22 497-500 http://identifiers.org/oryzabase.gene/14684 denotes cms
T23 535-539 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T24 535-539 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T25 535-539 http://identifiers.org/oryzabase.gene/8089 denotes atp6
T26 574-577 http://identifiers.org/oryzabase.gene/10887 denotes rmc
T27 622-626 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T28 622-626 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T29 622-626 http://identifiers.org/oryzabase.gene/8089 denotes atp6
T30 827-831 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T31 827-831 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T32 827-831 http://identifiers.org/oryzabase.gene/8089 denotes atp6
T33 950-953 http://identifiers.org/oryzabase.gene/10887 denotes rmc
T34 971-975 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T35 971-975 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T36 971-975 http://identifiers.org/oryzabase.gene/8089 denotes atp6
T37 1049-1052 http://identifiers.org/oryzabase.gene/14684 denotes CMS
T38 1097-1100 http://identifiers.org/oryzabase.gene/10887 denotes rmc
T39 1164-1177 http://identifiers.org/oryzabase.gene/885 denotes mitochondrial
T40 1164-1177 http://identifiers.org/oryzabase.gene/8747 denotes mitochondrial
T41 1164-1177 http://identifiers.org/oryzabase.gene/8315 denotes mitochondrial
T42 1164-1177 http://identifiers.org/oryzabase.gene/485 denotes mitochondrial
T43 1234-1238 http://identifiers.org/oryzabase.gene/8410 denotes atp6
T44 1234-1238 http://identifiers.org/oryzabase.gene/14124 denotes atp6
T45 1234-1238 http://identifiers.org/oryzabase.gene/8089 denotes atp6
T3242 45-49 http://identifiers.org/ricegap/LOC_Os01g15830 denotes atp6
T83090 111-127 http://identifiers.org/ricegap/LOC_Os01g15830 denotes ATPase subunit 6
T66948 129-133 http://identifiers.org/ricegap/LOC_Os01g15830 denotes atp6
T3659 206-209 http://identifiers.org/ricegap/LOC_Os01g66360 denotes cms
T42185 278-282 http://identifiers.org/ricegap/LOC_Os01g15830 denotes atp6
T98679 291-294 http://identifiers.org/ricegap/LOC_Os01g66360 denotes cms
T29748 347-350 http://identifiers.org/ricegap/LOC_Os01g66360 denotes CMS
T14701 444-448 http://identifiers.org/ricegap/LOC_Os01g15830 denotes atp6
T4333 459-462 http://identifiers.org/ricegap/LOC_Os04g56430 denotes rmc
T58678 484-488 http://identifiers.org/ricegap/LOC_Os01g15830 denotes atp6
T85064 497-500 http://identifiers.org/ricegap/LOC_Os01g66360 denotes cms
T86954 535-539 http://identifiers.org/ricegap/LOC_Os01g15830 denotes atp6
T71698 574-577 http://identifiers.org/ricegap/LOC_Os04g56430 denotes rmc
T25529 622-626 http://identifiers.org/ricegap/LOC_Os01g15830 denotes atp6
T5004 827-831 http://identifiers.org/ricegap/LOC_Os01g15830 denotes atp6
T4069 950-953 http://identifiers.org/ricegap/LOC_Os04g56430 denotes rmc
T13028 971-975 http://identifiers.org/ricegap/LOC_Os01g15830 denotes atp6
T86381 1049-1052 http://identifiers.org/ricegap/LOC_Os01g66360 denotes CMS
T15826 1097-1100 http://identifiers.org/ricegap/LOC_Os04g56430 denotes rmc
T99363 1164-1177 http://identifiers.org/ricegap/LOC_Os10g35440 denotes mitochondrial
T93002 1164-1177 http://identifiers.org/ricegap/LOC_Os07g04240 denotes mitochondrial
T23494 1164-1177 http://identifiers.org/ricegap/LOC_Os06g29180 denotes mitochondrial
T79895 1164-1177 http://identifiers.org/ricegap/LOC_Os02g48720 denotes mitochondrial
T71969 1234-1238 http://identifiers.org/ricegap/LOC_Os01g15830 denotes atp6
T22302 45-49 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T71401 111-127 http://identifiers.org/rapdb.locus/Os01g0263300 denotes ATPase subunit 6
T54443 129-133 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T71926 206-209 http://identifiers.org/rapdb.locus/Os01g0887100 denotes cms
T42155 278-282 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T25798 291-294 http://identifiers.org/rapdb.locus/Os01g0887100 denotes cms
T95525 347-350 http://identifiers.org/rapdb.locus/Os01g0887100 denotes CMS
T53227 444-448 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T17699 459-462 http://identifiers.org/rapdb.locus/Os04g0659300 denotes rmc
T61592 484-488 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T35266 497-500 http://identifiers.org/rapdb.locus/Os01g0887100 denotes cms
T71562 535-539 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T39346 574-577 http://identifiers.org/rapdb.locus/Os04g0659300 denotes rmc
T75268 622-626 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T2228 827-831 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T92450 950-953 http://identifiers.org/rapdb.locus/Os04g0659300 denotes rmc
T46398 971-975 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T39217 1049-1052 http://identifiers.org/rapdb.locus/Os01g0887100 denotes CMS
T1333 1097-1100 http://identifiers.org/rapdb.locus/Os04g0659300 denotes rmc
T88064 1164-1177 http://identifiers.org/rapdb.locus/Os10g0497432 denotes mitochondrial
T31788 1164-1177 http://identifiers.org/rapdb.locus/Os07g0134800 denotes mitochondrial
T47350 1164-1177 http://identifiers.org/rapdb.locus/Os06g0486800 denotes mitochondrial
T84407 1164-1177 http://identifiers.org/rapdb.locus/Os02g0718900 denotes mitochondrial
T48706 1234-1238 http://identifiers.org/rapdb.locus/Os01g0263300 denotes atp6
T47109 45-49 http://identifiers.org/uniprot/A7J0U4 denotes atp6
T26310 111-117 http://identifiers.org/uniprot/B6SVY2 denotes ATPase
T82621 129-133 http://identifiers.org/uniprot/A7J0U4 denotes atp6
T46961 278-282 http://identifiers.org/uniprot/A7J0U4 denotes atp6
T4459 347-350 http://identifiers.org/uniprot/A4PIB9 denotes CMS
T54642 444-448 http://identifiers.org/uniprot/A7J0U4 denotes atp6
T48553 484-488 http://identifiers.org/uniprot/A7J0U4 denotes atp6
T30876 535-539 http://identifiers.org/uniprot/A7J0U4 denotes atp6
T1501 622-626 http://identifiers.org/uniprot/A7J0U4 denotes atp6
T50555 827-831 http://identifiers.org/uniprot/A7J0U4 denotes atp6
T17688 971-975 http://identifiers.org/uniprot/A7J0U4 denotes atp6
T68435 1049-1052 http://identifiers.org/uniprot/A4PIB9 denotes CMS
T57594 1164-1177 http://identifiers.org/uniprot/Q6ZDY8 denotes mitochondrial
T22309 1164-1177 http://identifiers.org/uniprot/Q2PPE8 denotes mitochondrial
T43875 1164-1177 http://identifiers.org/uniprot/B6TRR5 denotes mitochondrial
T59861 1164-1177 http://identifiers.org/refseq/NP_001105434.1 denotes mitochondrial
T23554 1234-1238 http://identifiers.org/uniprot/A7J0U4 denotes atp6
M_0 455-458 hunflair:NA:Gene denotes urf
M_1 570-573 hunflair:NA:Gene denotes urf
M_2 946-949 hunflair:NA:Gene denotes urf
M_3 1093-1096 hunflair:NA:Gene denotes urf
M_4 278-287 hunflair:NA:Gene denotes atp6 gene
M_5 444-453 hunflair:NA:Gene denotes atp6 gene
M_6 484-493 hunflair:NA:Gene denotes atp6 gene
M_7 535-544 hunflair:NA:Gene denotes atp6 gene
M_8 622-631 hunflair:NA:Gene denotes atp6 gene
M_9 827-836 hunflair:NA:Gene denotes atp6 gene
M_10 971-980 hunflair:NA:Gene denotes atp6 gene
M_11 1234-1243 hunflair:NA:Gene denotes atp6 gene
M_12 347-350 hunflair:NA:Gene denotes CMS
M_13 1049-1052 hunflair:NA:Gene denotes CMS
M_14 459-462 hunflair:NA:Gene denotes rmc
M_15 574-577 hunflair:NA:Gene denotes rmc
M_16 950-953 hunflair:NA:Gene denotes rmc
M_17 1097-1100 hunflair:NA:Gene denotes rmc
M_18 99-103 hunflair:NA:Species denotes rice
M_19 144-148 hunflair:NA:Species denotes rice
M_20 298-302 hunflair:NA:Species denotes rice
M_21 822-826 hunflair:NA:Species denotes rice
M_22 111-127 hunflair:NA:Gene denotes ATPase subunit 6
M_23 435-453 hunflair:NA:Gene denotes chimeric atp6 gene
M_24 822-836 hunflair:NA:Gene denotes rice atp6 gene
M_25 45-49 hunflair:NA:Gene denotes atp6
M_26 129-133 hunflair:NA:Gene denotes atp6
M_27 278-282 hunflair:NA:Gene denotes atp6
M_28 444-448 hunflair:NA:Gene denotes atp6
M_29 484-488 hunflair:NA:Gene denotes atp6
M_30 535-539 hunflair:NA:Gene denotes atp6
M_31 622-626 hunflair:NA:Gene denotes atp6
M_32 827-831 hunflair:NA:Gene denotes atp6
M_33 971-975 hunflair:NA:Gene denotes atp6
M_34 1234-1238 hunflair:NA:Gene denotes atp6
M_35 347-350 hunflair:NA:Disease denotes CMS
M_36 1049-1052 hunflair:NA:Disease denotes CMS

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 1164-1177 HP_0001427 denotes mitochondrial

OryzaGP

Id Subject Object Predicate Lexical cue
T1 45-49 gene denotes atp6
T2 444-448 gene denotes atp6
T3 484-488 gene denotes atp6
T4 497-503 gene denotes cms-Bo
T5 535-626 gene denotes atp6 gene in normal cytoplasm. The urf-rmc gene is completely homologous to the normal atp6

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-104 Sentence denotes A chimeric gene containing the 5' portion of atp6 is associated with cytoplasmic male-sterility of rice.
T2 105-352 Sentence denotes Three ATPase subunit 6 (atp6) genes of rice mitochondria were isolated, one from normal and two from cms-Bo male-sterile cytoplasms, in order to determine whether the extra atp6 gene in cms-Bo rice plays a role in cytoplasmic male-sterility (CMS).
T3 353-565 Sentence denotes The nucleotide sequences of all three genes were determined and analysis showed a chimeric atp6 gene (urf-rmc) as well as a normal atp6 gene in cms-Bo cytoplasm, but only the normal atp6 gene in normal cytoplasm.
T4 566-869 Sentence denotes The urf-rmc gene is completely homologous to the normal atp6 gene from at least position -426 in the 5' flanking region to position +511 downstream from the initiation codon ATG: however, the following downstream sequence shows no homology with the normal rice atp6 gene, or any other reported sequence.
T5 870-1053 Sentence denotes Introduction of the restorer of fertility gene altered transcription of the urf-rmc gene but not the atp6 gene, indicating participation of the chimeric gene in the expression of CMS.
T6 1054-1312 Sentence denotes Southern blot analysis showed that the urf-rmc gene was generated by an intramolecular recombination event in mitochondrial DNA, and the homologous recombination point between the atp6 gene and the opposite ancestral sequence was identified as 5'-TTCCCTC-3'.