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PubMed:2116362 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 8-52 protein denotes B-cell lineage-specific transcription factor
T2 118-154 protein denotes B-cell-specific transcription factor
T3 156-160 protein denotes BSAP
T4 182-199 protein denotes mammalian homolog
T5 207-225 protein denotes sea urchin protein
T6 226-230 protein denotes TSAP
T7 257-266 DNA denotes promoters
T8 275-325 DNA denotes tissue-specific late histone H2A-2 and H2B-2 genes
T9 410-427 protein denotes mammalian protein
T10 428-432 protein denotes BSAP
T11 453-477 DNA denotes sea urchin binding sites
T12 513-517 protein denotes TSAP
T13 573-577 protein denotes BSAP
T14 794-832 cell_type denotes terminally differentiated plasma cells
T15 844-848 protein denotes BSAP
T16 862-898 protein denotes B-cell-specific transcription factor
T17 905-914 DNA denotes wild-type
T18 925-949 DNA denotes mutant TSAP-binding site
T19 986-1005 cell_line denotes transfected B cells
T20 1012-1037 DNA denotes upstream promoter element
T21 1082-1108 DNA denotes high-affinity binding site
T22 1113-1117 protein denotes BSAP
T23 1127-1145 DNA denotes regulatory regions
T24 1149-1213 DNA denotes immunoglobulin and class II major histocompatibility (MHC) genes
T25 1231-1235 protein denotes BSAP
T26 1273-1298 DNA denotes B-lymphoid-specific genes

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-109 Sentence denotes A novel B-cell lineage-specific transcription factor present at early but not late stages of differentiation.
S2 110-326 Sentence denotes A novel B-cell-specific transcription factor, BSAP, was identified as a mammalian homolog of the sea urchin protein TSAP, which interacts with the promoters of four tissue-specific late histone H2A-2 and H2B-2 genes.
S3 327-572 Sentence denotes As shown by mobility-shift, methylation interference, and mutational analyses, the mammalian protein BSAP recognizes all four sea urchin binding sites in a manner indistinguishable from TSAP; however, the two proteins differ in molecular weight.
S4 573-654 Sentence denotes BSAP is exclusively restricted to the B-cell lineage of lymphoid differentiation.
S5 655-833 Sentence denotes Its expression appears to be activated during pro-B-cell development, is abundant at the pre-B- and mature B-cell stages, but is absent in terminally differentiated plasma cells.
S6 834-1038 Sentence denotes Moreover, BSAP is clearly a B-cell-specific transcription factor, as a wild-type but not a mutant TSAP-binding site of the sea urchin functions only in transfected B cells as an upstream promoter element.
S7 1039-1299 Sentence denotes Competition experiments did not reveal any high-affinity binding site for BSAP in known regulatory regions of immunoglobulin and class II major histocompatibility (MHC) genes, suggesting that BSAP is a regulator of a different set of B-lymphoid-specific genes.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 0-52 NP denotes A novel B-cell lineage-specific transcription factor
C2 110-154 NP denotes A novel B-cell-specific transcription factor
C3 156-160 NP denotes BSAP
C4 203-230 NP denotes the sea urchin protein TSAP
C5 232-237 NP denotes which
C6 406-432 NP denotes the mammalian protein BSAP
C7 513-517 NP denotes TSAP
C8 573-577 NP denotes BSAP
C9 655-658 NP denotes Its
C10 844-848 NP denotes BSAP
C11 1113-1117 NP denotes BSAP
C12 1231-1235 NP denotes BSAP
R1 C2 C1 coref-ident A novel B-cell-specific transcription factor,A novel B-cell lineage-specific transcription factor
R2 C3 C2 coref-appos BSAP,A novel B-cell-specific transcription factor
R3 C5 C4 coref-relat which,the sea urchin protein TSAP
R4 C6 C2 coref-ident the mammalian protein BSAP,A novel B-cell-specific transcription factor
R5 C7 C4 coref-ident TSAP,the sea urchin protein TSAP
R6 C8 C6 coref-ident BSAP,the mammalian protein BSAP
R7 C9 C8 coref-pron Its,BSAP
R8 C10 C8 coref-ident BSAP,BSAP
R9 C11 C10 coref-ident BSAP,BSAP
R10 C12 C11 coref-ident BSAP,BSAP

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 8-52 protein_family_or_group denotes B-cell lineage-specific transcription factor
T2 118-154 protein_family_or_group denotes B-cell-specific transcription factor
T3 156-160 protein_molecule denotes BSAP
T4 182-199 protein_family_or_group denotes mammalian homolog
T5 207-225 protein_family_or_group denotes sea urchin protein
T6 226-230 protein_molecule denotes TSAP
T7 257-266 DNA_domain_or_region denotes promoters
T8 339-353 other_name denotes mobility-shift
T9 355-379 other_name denotes methylation interference
T10 385-404 other_name denotes mutational analyses
T11 410-427 protein_family_or_group denotes mammalian protein
T12 428-432 protein_molecule denotes BSAP
T13 453-477 DNA_domain_or_region denotes sea urchin binding sites
T14 513-517 protein_molecule denotes TSAP
T15 573-577 protein_molecule denotes BSAP
T16 629-653 other_name denotes lymphoid differentiation
T17 659-669 other_name denotes expression
T18 701-723 other_name denotes pro-B-cell development
T19 794-832 cell_type denotes terminally differentiated plasma cells
T20 844-848 protein_molecule denotes BSAP
T21 862-898 protein_family_or_group denotes B-cell-specific transcription factor
T22 905-914 DNA_domain_or_region denotes wild-type
T23 925-931 DNA_domain_or_region denotes mutant
T24 932-936 protein_molecule denotes TSAP
T25 957-967 multi_cell denotes sea urchin
T26 986-1005 cell_line denotes transfected B cells
T27 1012-1037 DNA_domain_or_region denotes upstream promoter element
T28 1082-1108 DNA_domain_or_region denotes high-affinity binding site
T29 1113-1117 protein_molecule denotes BSAP
T30 1127-1145 DNA_domain_or_region denotes regulatory regions
T31 1231-1235 protein_molecule denotes BSAP
T32 1273-1298 DNA_domain_or_region denotes B-lymphoid-specific genes