PubMed:21084405 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/21084405","sourcedb":"PubMed","sourceid":"21084405","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/21084405","text":"A novel alpha-D-galactosynthase from Thermotoga maritima converts beta-D-galactopyranosyl azide to alpha-galacto-oligosaccharides.\nThe large-scale production of oligosaccharides is a daunting task, hampering the study of the role of glycans in vivo and the testing of the efficacy of novel glycan-based drugs. Glycosynthases, mutated glycosidases that synthesize oligosaccharides in high yields, are becoming important chemo-enzymatic tools for the production of oligosaccharides. However, while β-glycosynthase can be produced with a rather well-established technology, examples of α-glycosynthases are thus far limited only to enzymes from glycoside hydrolase 29 (GH29), GH31 and GH95 families. α-L-Fucosynthases from GH29 use convenient glycosyl azide derivatives as a strategic alternative to glycosyl fluoride donors. However, the general applicability of this method to other α-glycosynthases is not trivial and remains to be confirmed. Here, β-D-galactopyranosyl azide was converted to α-galacto-oligosaccharides with good yields and high regioselectivity, catalyzed by a novel α-galactosynthase based on the GH36 α-galactosidase from the hyperthermophilic bacterium Thermotoga maritima. These results open a new avenue to the practical synthesis of biologically interesting α-galacto-oligosaccharides and demonstrate more widespread use of β-glycosyl-azide as donors, confirming their utility to expand the repertoire of glycosynthases.","tracks":[{"project":"Allie","denotations":[{"id":"SS1_21084405_3_0","span":{"begin":642,"end":664},"obj":"expanded"},{"id":"SS2_21084405_3_0","span":{"begin":666,"end":670},"obj":"abbr"}],"relations":[{"id":"AE1_21084405_3_0","pred":"abbreviatedTo","subj":"SS1_21084405_3_0","obj":"SS2_21084405_3_0"}],"attributes":[{"subj":"SS1_21084405_3_0","pred":"source","obj":"Allie"},{"subj":"SS2_21084405_3_0","pred":"source","obj":"Allie"}]},{"project":"performance-test","denotations":[{"id":"PD-UBERON-AE-B_T1","span":{"begin":141,"end":146},"obj":"http://purl.obolibrary.org/obo/UBERON_0002542"}],"attributes":[{"subj":"PD-UBERON-AE-B_T1","pred":"source","obj":"performance-test"}]},{"project":"GlycoBiology-FMA","denotations":[{"id":"_T1","span":{"begin":113,"end":129},"obj":"FMAID:196731"},{"id":"_T2","span":{"begin":113,"end":129},"obj":"FMAID:82742"},{"id":"_T3","span":{"begin":161,"end":177},"obj":"FMAID:196731"},{"id":"_T4","span":{"begin":161,"end":177},"obj":"FMAID:82742"},{"id":"_T5","span":{"begin":257,"end":264},"obj":"FMAID:178661"},{"id":"_T6","span":{"begin":363,"end":379},"obj":"FMAID:82742"},{"id":"_T7","span":{"begin":363,"end":379},"obj":"FMAID:196731"},{"id":"_T8","span":{"begin":463,"end":479},"obj":"FMAID:196731"},{"id":"_T9","span":{"begin":463,"end":479},"obj":"FMAID:82742"},{"id":"_T10","span":{"begin":1003,"end":1019},"obj":"FMAID:196731"},{"id":"_T11","span":{"begin":1003,"end":1019},"obj":"FMAID:82742"},{"id":"_T12","span":{"begin":1123,"end":1136},"obj":"FMAID:196789"},{"id":"_T13","span":{"begin":1123,"end":1136},"obj":"FMAID:82794"},{"id":"_T14","span":{"begin":1292,"end":1308},"obj":"FMAID:196731"},{"id":"_T15","span":{"begin":1292,"end":1308},"obj":"FMAID:82742"}],"namespaces":[{"prefix":"FMAID","uri":"http://purl.org/sig/ont/fma/fma"}],"attributes":[{"subj":"_T1","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T2","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T3","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T4","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T5","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T6","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T7","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T8","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T9","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T10","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T11","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T12","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T13","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T14","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T15","pred":"source","obj":"GlycoBiology-FMA"}]},{"project":"uniprot-mouse","denotations":[{"id":"T1","span":{"begin":192,"end":196},"obj":"http://www.uniprot.org/uniprot/O35111"}],"attributes":[{"subj":"T1","pred":"source","obj":"uniprot-mouse"}]},{"project":"GlycoBiology-MAT","denotations":[{"id":"T1","span":{"begin":1164,"end":1173},"obj":"http://purl.obolibrary.org/obo/MAT_0000191"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-MAT"}]},{"project":"GlycoBiology-NCBITAXON","denotations":[{"id":"T1","span":{"begin":37,"end":47},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/188709"},{"id":"T2","span":{"begin":37,"end":47},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/200918"},{"id":"T3","span":{"begin":37,"end":47},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/188708"},{"id":"T4","span":{"begin":37,"end":47},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/2335"},{"id":"T5","span":{"begin":37,"end":56},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/2336"},{"id":"T6","span":{"begin":66,"end":70},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/158455"},{"id":"T7","span":{"begin":66,"end":70},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/3554"},{"id":"T8","span":{"begin":1146,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/198711"},{"id":"T9","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/336400"},{"id":"T10","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/538104"},{"id":"T11","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/1368069"},{"id":"T12","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/538107"},{"id":"T13","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/538108"},{"id":"T14","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/538113"},{"id":"T15","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/538117"},{"id":"T16","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/538101"},{"id":"T17","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/138290"},{"id":"T18","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/336403"},{"id":"T19","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/538099"},{"id":"T20","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/1144558"},{"id":"T21","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/336405"},{"id":"T22","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/674166"},{"id":"T23","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/400048"},{"id":"T24","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/538097"},{"id":"T25","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/538091"},{"id":"T26","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/1730"},{"id":"T27","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/538085"},{"id":"T28","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/538084"},{"id":"T29","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/538076"},{"id":"T30","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/538075"},{"id":"T31","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/538072"},{"id":"T32","span":{"begin":1164,"end":1173},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/336404"},{"id":"T33","span":{"begin":1174,"end":1184},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/188708"},{"id":"T34","span":{"begin":1174,"end":1184},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/200918"},{"id":"T35","span":{"begin":1174,"end":1184},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/2335"},{"id":"T36","span":{"begin":1174,"end":1184},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/188709"},{"id":"T37","span":{"begin":1174,"end":1193},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/2336"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T2","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T3","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T4","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T5","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T6","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T7","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T8","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T9","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T10","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T11","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T12","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T13","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T14","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T15","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T16","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T17","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T18","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T19","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T20","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T21","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T22","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T23","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T24","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T25","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T26","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T27","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T28","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T29","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T30","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T31","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T32","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T33","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T34","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T35","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T36","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T37","pred":"source","obj":"GlycoBiology-NCBITAXON"}]},{"project":"sentences","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":130},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":131,"end":309},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":310,"end":480},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":481,"end":822},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":823,"end":942},"obj":"Sentence"},{"id":"TextSentencer_T6","span":{"begin":943,"end":1194},"obj":"Sentence"},{"id":"TextSentencer_T7","span":{"begin":1195,"end":1444},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":130},"obj":"Sentence"},{"id":"T2","span":{"begin":131,"end":309},"obj":"Sentence"},{"id":"T3","span":{"begin":310,"end":480},"obj":"Sentence"},{"id":"T4","span":{"begin":481,"end":822},"obj":"Sentence"},{"id":"T5","span":{"begin":823,"end":942},"obj":"Sentence"},{"id":"T6","span":{"begin":943,"end":1194},"obj":"Sentence"},{"id":"T7","span":{"begin":1195,"end":1444},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":130},"obj":"Sentence"},{"id":"T2","span":{"begin":131,"end":309},"obj":"Sentence"},{"id":"T3","span":{"begin":310,"end":480},"obj":"Sentence"},{"id":"T4","span":{"begin":481,"end":822},"obj":"Sentence"},{"id":"T5","span":{"begin":823,"end":942},"obj":"Sentence"},{"id":"T6","span":{"begin":943,"end":1194},"obj":"Sentence"},{"id":"T7","span":{"begin":1195,"end":1444},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"TextSentencer_T1","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T2","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T3","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T4","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T5","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T6","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T7","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"}]},{"project":"GO-BP","denotations":[{"id":"T1","span":{"begin":740,"end":748},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T2","span":{"begin":797,"end":805},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T3","span":{"begin":1350,"end":1358},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T4","span":{"begin":1244,"end":1253},"obj":"http://purl.obolibrary.org/obo/GO_0009058"}],"attributes":[{"subj":"T1","pred":"source","obj":"GO-BP"},{"subj":"T2","pred":"source","obj":"GO-BP"},{"subj":"T3","pred":"source","obj":"GO-BP"},{"subj":"T4","pred":"source","obj":"GO-BP"}]},{"project":"UBERON-AE","denotations":[{"id":"T1","span":{"begin":141,"end":146},"obj":"http://purl.obolibrary.org/obo/UBERON_0002542"}],"attributes":[{"subj":"T1","pred":"source","obj":"UBERON-AE"}]},{"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":37,"end":56},"obj":"OrganismTaxon"},{"id":"T2","span":{"begin":1174,"end":1193},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"2336"},{"id":"A2","pred":"db_id","subj":"T2","obj":"2336"},{"subj":"T1","pred":"source","obj":"NCBITAXON"},{"subj":"T2","pred":"source","obj":"NCBITAXON"}]},{"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":141,"end":146},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0002542"},{"subj":"T1","pred":"source","obj":"Anatomy-UBERON"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"Allie","color":"#ec93a5","default":true},{"id":"performance-test","color":"#93bfec"},{"id":"GlycoBiology-FMA","color":"#d9ec93"},{"id":"uniprot-mouse","color":"#e493ec"},{"id":"GlycoBiology-MAT","color":"#93ecca"},{"id":"GlycoBiology-NCBITAXON","color":"#ecb093"},{"id":"sentences","color":"#9693ec"},{"id":"GO-BP","color":"#a9ec93"},{"id":"UBERON-AE","color":"#ec93c3"},{"id":"NCBITAXON","color":"#93ddec"},{"id":"Anatomy-UBERON","color":"#ece093"}]}]}}