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PubMed:21084405 JSONTXT

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GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 113-129 FMAID:196731 denotes oligosaccharides
_T2 113-129 FMAID:82742 denotes oligosaccharides
_T3 161-177 FMAID:196731 denotes oligosaccharides
_T4 161-177 FMAID:82742 denotes oligosaccharides
_T5 257-264 FMAID:178661 denotes testing
_T6 363-379 FMAID:82742 denotes oligosaccharides
_T7 363-379 FMAID:196731 denotes oligosaccharides
_T8 463-479 FMAID:196731 denotes oligosaccharides
_T9 463-479 FMAID:82742 denotes oligosaccharides
_T10 1003-1019 FMAID:196731 denotes oligosaccharides
_T11 1003-1019 FMAID:82742 denotes oligosaccharides
_T12 1123-1136 FMAID:196789 denotes galactosidase
_T13 1123-1136 FMAID:82794 denotes galactosidase
_T14 1292-1308 FMAID:196731 denotes oligosaccharides
_T15 1292-1308 FMAID:82742 denotes oligosaccharides

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 192-196 http://www.uniprot.org/uniprot/O35111 denotes task

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 37-47 http://purl.bioontology.org/ontology/NCBITAXON/188709 denotes Thermotoga
T2 37-47 http://purl.bioontology.org/ontology/NCBITAXON/200918 denotes Thermotoga
T3 37-47 http://purl.bioontology.org/ontology/NCBITAXON/188708 denotes Thermotoga
T4 37-47 http://purl.bioontology.org/ontology/NCBITAXON/2335 denotes Thermotoga
T5 37-56 http://purl.bioontology.org/ontology/NCBITAXON/2336 denotes Thermotoga maritima
T6 66-70 http://purl.bioontology.org/ontology/NCBITAXON/158455 denotes beta
T7 66-70 http://purl.bioontology.org/ontology/NCBITAXON/3554 denotes beta
T8 1146-1173 http://purl.bioontology.org/ontology/NCBITAXON/198711 denotes hyperthermophilic bacterium
T9 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/336400 denotes bacterium
T10 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/538104 denotes bacterium
T11 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/1368069 denotes bacterium
T12 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/538107 denotes bacterium
T13 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/538108 denotes bacterium
T14 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/538113 denotes bacterium
T15 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/538117 denotes bacterium
T16 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/538101 denotes bacterium
T17 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/138290 denotes bacterium
T18 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/336403 denotes bacterium
T19 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/538099 denotes bacterium
T20 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/1144558 denotes bacterium
T21 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/336405 denotes bacterium
T22 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/674166 denotes bacterium
T23 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/400048 denotes bacterium
T24 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/538097 denotes bacterium
T25 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/538091 denotes bacterium
T26 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/1730 denotes bacterium
T27 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/538085 denotes bacterium
T28 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/538084 denotes bacterium
T29 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/538076 denotes bacterium
T30 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/538075 denotes bacterium
T31 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/538072 denotes bacterium
T32 1164-1173 http://purl.bioontology.org/ontology/NCBITAXON/336404 denotes bacterium
T33 1174-1184 http://purl.bioontology.org/ontology/NCBITAXON/188708 denotes Thermotoga
T34 1174-1184 http://purl.bioontology.org/ontology/NCBITAXON/200918 denotes Thermotoga
T35 1174-1184 http://purl.bioontology.org/ontology/NCBITAXON/2335 denotes Thermotoga
T36 1174-1184 http://purl.bioontology.org/ontology/NCBITAXON/188709 denotes Thermotoga
T37 1174-1193 http://purl.bioontology.org/ontology/NCBITAXON/2336 denotes Thermotoga maritima

GO-BP

Id Subject Object Predicate Lexical cue
T1 740-748 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosyl
T2 797-805 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosyl
T3 1350-1358 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosyl
T4 1244-1253 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 141-146 http://purl.obolibrary.org/obo/UBERON_0002542 denotes scale

Allie

Id Subject Object Predicate Lexical cue
SS1_21084405_3_0 642-664 expanded denotes glycoside hydrolase 29
SS2_21084405_3_0 666-670 abbr denotes GH29
AE1_21084405_3_0 SS1_21084405_3_0 SS2_21084405_3_0 abbreviatedTo glycoside hydrolase 29,GH29

GlycoBiology-MAT

Id Subject Object Predicate Lexical cue
T1 1164-1173 http://purl.obolibrary.org/obo/MAT_0000191 denotes bacterium

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-130 Sentence denotes A novel alpha-D-galactosynthase from Thermotoga maritima converts beta-D-galactopyranosyl azide to alpha-galacto-oligosaccharides.
TextSentencer_T2 131-309 Sentence denotes The large-scale production of oligosaccharides is a daunting task, hampering the study of the role of glycans in vivo and the testing of the efficacy of novel glycan-based drugs.
TextSentencer_T3 310-480 Sentence denotes Glycosynthases, mutated glycosidases that synthesize oligosaccharides in high yields, are becoming important chemo-enzymatic tools for the production of oligosaccharides.
TextSentencer_T4 481-822 Sentence denotes However, while β-glycosynthase can be produced with a rather well-established technology, examples of α-glycosynthases are thus far limited only to enzymes from glycoside hydrolase 29 (GH29), GH31 and GH95 families. α-L-Fucosynthases from GH29 use convenient glycosyl azide derivatives as a strategic alternative to glycosyl fluoride donors.
TextSentencer_T5 823-942 Sentence denotes However, the general applicability of this method to other α-glycosynthases is not trivial and remains to be confirmed.
TextSentencer_T6 943-1194 Sentence denotes Here, β-D-galactopyranosyl azide was converted to α-galacto-oligosaccharides with good yields and high regioselectivity, catalyzed by a novel α-galactosynthase based on the GH36 α-galactosidase from the hyperthermophilic bacterium Thermotoga maritima.
TextSentencer_T7 1195-1444 Sentence denotes These results open a new avenue to the practical synthesis of biologically interesting α-galacto-oligosaccharides and demonstrate more widespread use of β-glycosyl-azide as donors, confirming their utility to expand the repertoire of glycosynthases.
T1 0-130 Sentence denotes A novel alpha-D-galactosynthase from Thermotoga maritima converts beta-D-galactopyranosyl azide to alpha-galacto-oligosaccharides.
T2 131-309 Sentence denotes The large-scale production of oligosaccharides is a daunting task, hampering the study of the role of glycans in vivo and the testing of the efficacy of novel glycan-based drugs.
T3 310-480 Sentence denotes Glycosynthases, mutated glycosidases that synthesize oligosaccharides in high yields, are becoming important chemo-enzymatic tools for the production of oligosaccharides.
T4 481-822 Sentence denotes However, while β-glycosynthase can be produced with a rather well-established technology, examples of α-glycosynthases are thus far limited only to enzymes from glycoside hydrolase 29 (GH29), GH31 and GH95 families. α-L-Fucosynthases from GH29 use convenient glycosyl azide derivatives as a strategic alternative to glycosyl fluoride donors.
T5 823-942 Sentence denotes However, the general applicability of this method to other α-glycosynthases is not trivial and remains to be confirmed.
T6 943-1194 Sentence denotes Here, β-D-galactopyranosyl azide was converted to α-galacto-oligosaccharides with good yields and high regioselectivity, catalyzed by a novel α-galactosynthase based on the GH36 α-galactosidase from the hyperthermophilic bacterium Thermotoga maritima.
T7 1195-1444 Sentence denotes These results open a new avenue to the practical synthesis of biologically interesting α-galacto-oligosaccharides and demonstrate more widespread use of β-glycosyl-azide as donors, confirming their utility to expand the repertoire of glycosynthases.
T1 0-130 Sentence denotes A novel alpha-D-galactosynthase from Thermotoga maritima converts beta-D-galactopyranosyl azide to alpha-galacto-oligosaccharides.
T2 131-309 Sentence denotes The large-scale production of oligosaccharides is a daunting task, hampering the study of the role of glycans in vivo and the testing of the efficacy of novel glycan-based drugs.
T3 310-480 Sentence denotes Glycosynthases, mutated glycosidases that synthesize oligosaccharides in high yields, are becoming important chemo-enzymatic tools for the production of oligosaccharides.
T4 481-822 Sentence denotes However, while β-glycosynthase can be produced with a rather well-established technology, examples of α-glycosynthases are thus far limited only to enzymes from glycoside hydrolase 29 (GH29), GH31 and GH95 families. α-L-Fucosynthases from GH29 use convenient glycosyl azide derivatives as a strategic alternative to glycosyl fluoride donors.
T5 823-942 Sentence denotes However, the general applicability of this method to other α-glycosynthases is not trivial and remains to be confirmed.
T6 943-1194 Sentence denotes Here, β-D-galactopyranosyl azide was converted to α-galacto-oligosaccharides with good yields and high regioselectivity, catalyzed by a novel α-galactosynthase based on the GH36 α-galactosidase from the hyperthermophilic bacterium Thermotoga maritima.
T7 1195-1444 Sentence denotes These results open a new avenue to the practical synthesis of biologically interesting α-galacto-oligosaccharides and demonstrate more widespread use of β-glycosyl-azide as donors, confirming their utility to expand the repertoire of glycosynthases.

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 141-146 http://purl.obolibrary.org/obo/UBERON_0002542 denotes scale

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 37-56 OrganismTaxon denotes Thermotoga maritima 2336
T2 1174-1193 OrganismTaxon denotes Thermotoga maritima 2336

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 141-146 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542