PubMed:20038961 JSON TXT

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21k_plant_trait_mention

pqqtest_sentence

{"project":"pqqtest_sentence","denotations":[{"id":"M_0","span":{"begin":1223,"end":1259},"obj":"cand:TO:0006019-floral organ identity"},{"id":"M_1","span":{"begin":1223,"end":1259},"obj":"cand:PO:0007601-floral organ meristem development stage"},{"id":"M_2","span":{"begin":1223,"end":1259},"obj":"cand:funRiceGene:175-floral organ"},{"id":"M_3","span":{"begin":1223,"end":1259},"obj":"cand:PO:0025477-floral organ primordium"},{"id":"M_4","span":{"begin":1223,"end":1259},"obj":"cand:funRiceGene:1-floral organ number"},{"id":"M_5","span":{"begin":1223,"end":1259},"obj":"cand:TO:0002614-floral organ length"},{"id":"M_6","span":{"begin":1223,"end":1259},"obj":"cand:PO:0007600-floral organ differentiation stage"},{"id":"M_7","span":{"begin":1223,"end":1259},"obj":"cand:funRiceGene:385-floral organ number control"},{"id":"M_8","span":{"begin":1223,"end":1259},"obj":"cand:TO:0006022-floral organ development trait"},{"id":"M_9","span":{"begin":1070,"end":1109},"obj":"cand:funRiceGene:312-floral 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funRiceGene:359"},{"id":"T79327","span":{"begin":714,"end":741},"obj":"xzyao:44216"},{"id":"T99324","span":{"begin":899,"end":918},"obj":"xzyao:4161"},{"id":"T31488","span":{"begin":922,"end":943},"obj":"xzyao:3990"},{"id":"T51313","span":{"begin":723,"end":729},"obj":"PO:0009030"},{"id":"T52345","span":{"begin":663,"end":677},"obj":"xzyao:18215"},{"id":"T77361","span":{"begin":54,"end":62},"obj":"funRiceGene:300"},{"id":"T48022","span":{"begin":335,"end":343},"obj":"funRiceGene:300"},{"id":"T98312","span":{"begin":427,"end":435},"obj":"funRiceGene:300"},{"id":"T25268","span":{"begin":761,"end":769},"obj":"funRiceGene:300"},{"id":"T93565","span":{"begin":1240,"end":1248},"obj":"funRiceGene:300"},{"id":"T70891","span":{"begin":611,"end":627},"obj":"xzyao:28643"},{"id":"T73881","span":{"begin":439,"end":451},"obj":"xzyao:21587"},{"id":"T44667","span":{"begin":655,"end":677},"obj":"xzyao:20009"},{"id":"T12127","span":{"begin":754,"end":781},"obj":"funRiceGene:128, xzyao:28487"},{"id":"T66455","span":{"begin":685,"end":690},"obj":"PO:0009039"},{"id":"T65679","span":{"begin":922,"end":927},"obj":"PO:0009039"},{"id":"T97506","span":{"begin":679,"end":690},"obj":"xzyao:25703"},{"id":"T59010","span":{"begin":37,"end":43},"obj":"funRiceGene:183"},{"id":"T83742","span":{"begin":318,"end":324},"obj":"funRiceGene:183"},{"id":"T32211","span":{"begin":420,"end":426},"obj":"funRiceGene:183"},{"id":"T43937","span":{"begin":754,"end":760},"obj":"funRiceGene:183"},{"id":"T1881","span":{"begin":905,"end":911},"obj":"funRiceGene:183"},{"id":"T13626","span":{"begin":1093,"end":1099},"obj":"funRiceGene:183"},{"id":"T32762","span":{"begin":1194,"end":1200},"obj":"funRiceGene:183"},{"id":"T35987","span":{"begin":1223,"end":1229},"obj":"funRiceGene:183"},{"id":"T95798","span":{"begin":761,"end":781},"obj":"xzyao:13112"},{"id":"T13405","span":{"begin":1070,"end":1109},"obj":"xzyao:39430"},{"id":"T11253","span":{"begin":548,"end":558},"obj":"PO:0020021"},{"id":"T35307","span":{"begin":587,"end":597},"obj":"PO:0009064"},{"id":"T97195","span":{"begin":562,"end":567},"obj":"funRiceGene:234"},{"id":"T17932","span":{"begin":723,"end":741},"obj":"xzyao:3295"},{"id":"T76301","span":{"begin":420,"end":435},"obj":"funRiceGene:508, xzyao:25765"},{"id":"T84824","span":{"begin":754,"end":769},"obj":"funRiceGene:508, xzyao:25765"},{"id":"T64787","span":{"begin":905,"end":918},"obj":"xzyao:33833"},{"id":"T42019","span":{"begin":37,"end":73},"obj":"xzyao:32585"},{"id":"T84754","span":{"begin":318,"end":354},"obj":"xzyao:32585"},{"id":"T78346","span":{"begin":1223,"end":1259},"obj":"xzyao:32585"},{"id":"T94837","span":{"begin":663,"end":668},"obj":"PO:0009038, funRiceGene:257"},{"id":"T71672","span":{"begin":4,"end":13},"obj":"hunflair:NA:Gene"},{"id":"T98840","span":{"begin":279,"end":288},"obj":"hunflair:NA:Gene"},{"id":"T92283","span":{"begin":979,"end":988},"obj":"hunflair:NA:Gene"},{"id":"T89899","span":{"begin":1025,"end":1034},"obj":"hunflair:NA:Gene"},{"id":"T99836","span":{"begin":989,"end":998},"obj":"hunflair:NA:Gene"},{"id":"T27538","span":{"begin":1035,"end":1044},"obj":"hunflair:NA:Gene"},{"id":"T25285","span":{"begin":809,"end":818},"obj":"hunflair:NA:Gene"},{"id":"T50742","span":{"begin":845,"end":849},"obj":"hunflair:NA:Gene"},{"id":"T67517","span":{"begin":92,"end":105},"obj":"hunflair:NA:Gene"},{"id":"T27509","span":{"begin":4,"end":8},"obj":"hunflair:NA:Gene"},{"id":"T2870","span":{"begin":107,"end":111},"obj":"hunflair:NA:Gene"},{"id":"T78200","span":{"begin":279,"end":283},"obj":"hunflair:NA:Gene"},{"id":"T43018","span":{"begin":364,"end":376},"obj":"hunflair:NA:Species"},{"id":"T90911","span":{"begin":836,"end":843},"obj":"hunflair:NA:Gene"},{"id":"T20960","span":{"begin":1295,"end":1302},"obj":"hunflair:NA:Gene"},{"id":"T73493","span":{"begin":77,"end":81},"obj":"hunflair:NA:Species"},{"id":"T94904","span":{"begin":358,"end":362},"obj":"hunflair:NA:Species"},{"id":"T53528","span":{"begin":1276,"end":1280},"obj":"hunflair:NA:Species"},{"id":"T44132","span":{"begin":629,"end":636},"obj":"hunflair:NA:Gene"},{"id":"T58396","span":{"begin":875,"end":882},"obj":"hunflair:NA:Gene"},{"id":"T61286","span":{"begin":989,"end":996},"obj":"hunflair:NA:Gene"},{"id":"T59616","span":{"begin":1035,"end":1042},"obj":"hunflair:NA:Gene"},{"id":"T77345","span":{"begin":19,"end":26},"obj":"hunflair:NA:Gene"},{"id":"T55339","span":{"begin":295,"end":302},"obj":"hunflair:NA:Gene"},{"id":"T21848","span":{"begin":382,"end":389},"obj":"hunflair:NA:Gene"},{"id":"T11780","span":{"begin":467,"end":474},"obj":"hunflair:NA:Gene"},{"id":"T87637","span":{"begin":1161,"end":1168},"obj":"hunflair:NA:Gene"},{"id":"T96113","span":{"begin":820,"end":823},"obj":"hunflair:NA:Gene"},{"id":"T70343","span":{"begin":77,"end":81},"obj":"pubtator:4530:Species"},{"id":"T85242","span":{"begin":358,"end":362},"obj":"pubtator:4530:Species"},{"id":"T65879","span":{"begin":1276,"end":1280},"obj":"pubtator:4530:Species"},{"id":"M_76","span":{"begin":183,"end":194},"obj":"pubtator:3398:Species"},{"id":"M_77","span":{"begin":364,"end":378},"obj":"pubtator:4530:Species"}],"text":"The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice.\nAlthough AGAMOUS-LIKE6 (AGL6) MADS-box genes are ancient with wide distributions in gymnosperms and angiosperms, their functions remain poorly understood. Here, we show the biological role of the AGL6-like gene, OsMADS6, in specifying floral organ and meristem identities in rice (Oryza sativa L.). OsMADS6 was strongly expressed in the floral meristem at early stages. Subsequently, OsMADS6 transcripts were mainly detectable in paleas, lodicules, carpels and the integument of ovule, as well as in the receptacle. Compared to wild type plants, osmads6 mutants displayed altered palea identity, extra glume-like or mosaic organs, abnormal carpel development and loss of floral meristem determinacy. Strikingly, mutation of a SEPALLATA (SEP)-like gene, OsMADS1 (LHS1), enhanced the defect of osmads6 flowers, and no inner floral organs or glume-like structures were observed in whorls 2 and 3 of osmads1-z osmads6-1 flowers. Furthermore, the osmads1-z osmads6-1 double mutants developed severely indeterminate floral meristems. Our finding, therefore, suggests that the ancient OsMADS6 gene is able to specify \"floral state\" by determining floral organ and meristem identities in monocot crop rice together with OsMADS1."}

Allie

{"project":"Allie","denotations":[{"id":"SS1_20038961_1_0","span":{"begin":92,"end":105},"obj":"expanded"},{"id":"SS2_20038961_1_0","span":{"begin":107,"end":111},"obj":"abbr"},{"id":"SS1_20038961_6_0","span":{"begin":809,"end":818},"obj":"expanded"},{"id":"SS2_20038961_6_0","span":{"begin":820,"end":823},"obj":"abbr"}],"relations":[{"id":"AE1_20038961_1_0","pred":"abbreviatedTo","subj":"SS1_20038961_1_0","obj":"SS2_20038961_1_0"},{"id":"AE1_20038961_6_0","pred":"abbreviatedTo","subj":"SS1_20038961_6_0","obj":"SS2_20038961_6_0"}],"text":"The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice.\nAlthough AGAMOUS-LIKE6 (AGL6) MADS-box genes are ancient with wide distributions in gymnosperms and angiosperms, their functions remain poorly understood. Here, we show the biological role of the AGL6-like gene, OsMADS6, in specifying floral organ and meristem identities in rice (Oryza sativa L.). OsMADS6 was strongly expressed in the floral meristem at early stages. Subsequently, OsMADS6 transcripts were mainly detectable in paleas, lodicules, carpels and the integument of ovule, as well as in the receptacle. Compared to wild type plants, osmads6 mutants displayed altered palea identity, extra glume-like or mosaic organs, abnormal carpel development and loss of floral meristem determinacy. Strikingly, mutation of a SEPALLATA (SEP)-like gene, OsMADS1 (LHS1), enhanced the defect of osmads6 flowers, and no inner floral organs or glume-like structures were observed in whorls 2 and 3 of osmads1-z osmads6-1 flowers. Furthermore, the osmads1-z osmads6-1 double mutants developed severely indeterminate floral meristems. Our finding, therefore, suggests that the ancient OsMADS6 gene is able to specify \"floral state\" by determining floral organ and meristem identities in monocot crop rice together with OsMADS1."}

funRiceGenes-all

{"project":"funRiceGenes-all","denotations":[{"id":"PTO-all_T1","span":{"begin":54,"end":73},"obj":"http://purl.obolibrary.org/obo/TO_0006017"},{"id":"PTO-all_T2","span":{"begin":335,"end":354},"obj":"http://purl.obolibrary.org/obo/TO_0006017"},{"id":"PTO-all_T3","span":{"begin":761,"end":781},"obj":"http://purl.obolibrary.org/obo/TO_0006017"},{"id":"PTO-all_T4","span":{"begin":1240,"end":1259},"obj":"http://purl.obolibrary.org/obo/TO_0006017"}],"text":"The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice.\nAlthough AGAMOUS-LIKE6 (AGL6) MADS-box genes are ancient with wide distributions in gymnosperms and angiosperms, their functions remain poorly understood. Here, we show the biological role of the AGL6-like gene, OsMADS6, in specifying floral organ and meristem identities in rice (Oryza sativa L.). OsMADS6 was strongly expressed in the floral meristem at early stages. Subsequently, OsMADS6 transcripts were mainly detectable in paleas, lodicules, carpels and the integument of ovule, as well as in the receptacle. Compared to wild type plants, osmads6 mutants displayed altered palea identity, extra glume-like or mosaic organs, abnormal carpel development and loss of floral meristem determinacy. Strikingly, mutation of a SEPALLATA (SEP)-like gene, OsMADS1 (LHS1), enhanced the defect of osmads6 flowers, and no inner floral organs or glume-like structures were observed in whorls 2 and 3 of osmads1-z osmads6-1 flowers. Furthermore, the osmads1-z osmads6-1 double mutants developed severely indeterminate floral meristems. Our finding, therefore, suggests that the ancient OsMADS6 gene is able to specify \"floral state\" by determining floral organ and meristem identities in monocot crop rice together with OsMADS1."}

funRiceGenes-exact

{"project":"funRiceGenes-exact","denotations":[{"id":"PTO-exact_T1","span":{"begin":54,"end":73},"obj":"http://purl.obolibrary.org/obo/TO_0006017"},{"id":"PTO-exact_T2","span":{"begin":335,"end":354},"obj":"http://purl.obolibrary.org/obo/TO_0006017"},{"id":"PTO-exact_T3","span":{"begin":761,"end":781},"obj":"http://purl.obolibrary.org/obo/TO_0006017"},{"id":"PTO-exact_T4","span":{"begin":1240,"end":1259},"obj":"http://purl.obolibrary.org/obo/TO_0006017"}],"text":"The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice.\nAlthough AGAMOUS-LIKE6 (AGL6) MADS-box genes are ancient with wide distributions in gymnosperms and angiosperms, their functions remain poorly understood. Here, we show the biological role of the AGL6-like gene, OsMADS6, in specifying floral organ and meristem identities in rice (Oryza sativa L.). OsMADS6 was strongly expressed in the floral meristem at early stages. Subsequently, OsMADS6 transcripts were mainly detectable in paleas, lodicules, carpels and the integument of ovule, as well as in the receptacle. Compared to wild type plants, osmads6 mutants displayed altered palea identity, extra glume-like or mosaic organs, abnormal carpel development and loss of floral meristem determinacy. Strikingly, mutation of a SEPALLATA (SEP)-like gene, OsMADS1 (LHS1), enhanced the defect of osmads6 flowers, and no inner floral organs or glume-like structures were observed in whorls 2 and 3 of osmads1-z osmads6-1 flowers. Furthermore, the osmads1-z osmads6-1 double mutants developed severely indeterminate floral meristems. Our finding, therefore, suggests that the ancient OsMADS6 gene is able to specify \"floral state\" by determining floral organ and meristem identities in monocot crop rice together with OsMADS1."}