PubMed:19864674 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/19864674","sourcedb":"PubMed","sourceid":"19864674","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/19864674","text":"Human dectin-1 deficiency and mucocutaneous fungal infections.\nMucocutaneous fungal infections are typically found in patients who have no known immune defects. We describe a family in which four women who were affected by either recurrent vulvovaginal candidiasis or onychomycosis had the early-stop-codon mutation Tyr238X in the beta-glucan receptor dectin-1. The mutated form of dectin-1 was poorly expressed, did not mediate beta-glucan binding, and led to defective production of cytokines (interleukin-17, tumor necrosis factor, and interleukin-6) after stimulation with beta-glucan or Candida albicans. In contrast, fungal phagocytosis and fungal killing were normal in the patients, explaining why dectin-1 deficiency was not associated with invasive fungal infections and highlighting the specific role of dectin-1 in human mucosal antifungal defense.","tracks":[{"project":"DisGeNET","denotations":[{"id":"T0","span":{"begin":6,"end":14},"obj":"gene:64581"},{"id":"T1","span":{"begin":44,"end":61},"obj":"disease:C0026946"},{"id":"T2","span":{"begin":815,"end":823},"obj":"gene:64581"},{"id":"T3","span":{"begin":647,"end":653},"obj":"disease:C0026946"},{"id":"T4","span":{"begin":706,"end":714},"obj":"gene:64581"},{"id":"T5","span":{"begin":759,"end":776},"obj":"disease:C0026946"},{"id":"T6","span":{"begin":815,"end":823},"obj":"gene:64581"},{"id":"T7","span":{"begin":759,"end":776},"obj":"disease:C0026946"},{"id":"T8","span":{"begin":706,"end":714},"obj":"gene:64581"},{"id":"T9","span":{"begin":647,"end":653},"obj":"disease:C0026946"}],"relations":[{"id":"R1","pred":"associated_with","subj":"T0","obj":"T1"},{"id":"R2","pred":"associated_with","subj":"T2","obj":"T3"},{"id":"R3","pred":"associated_with","subj":"T4","obj":"T5"},{"id":"R4","pred":"associated_with","subj":"T6","obj":"T7"},{"id":"R5","pred":"associated_with","subj":"T8","obj":"T9"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"attributes":[{"subj":"T0","pred":"source","obj":"DisGeNET"},{"subj":"T1","pred":"source","obj":"DisGeNET"},{"subj":"T2","pred":"source","obj":"DisGeNET"},{"subj":"T3","pred":"source","obj":"DisGeNET"},{"subj":"T4","pred":"source","obj":"DisGeNET"},{"subj":"T5","pred":"source","obj":"DisGeNET"},{"subj":"T6","pred":"source","obj":"DisGeNET"},{"subj":"T7","pred":"source","obj":"DisGeNET"},{"subj":"T8","pred":"source","obj":"DisGeNET"},{"subj":"T9","pred":"source","obj":"DisGeNET"}]},{"project":"DisGeNET5_variant_disease","denotations":[{"id":"19864674-2#155#162#geners16910526","span":{"begin":316,"end":323},"obj":"geners16910526"},{"id":"19864674-2#79#103#diseaseC0700345","span":{"begin":240,"end":264},"obj":"diseaseC0700345"},{"id":"19864674-2#107#120#diseaseC0040261","span":{"begin":268,"end":281},"obj":"diseaseC0040261"}],"relations":[{"id":"155#162#geners1691052679#103#diseaseC0700345","pred":"associated_with","subj":"19864674-2#155#162#geners16910526","obj":"19864674-2#79#103#diseaseC0700345"},{"id":"155#162#geners16910526107#120#diseaseC0040261","pred":"associated_with","subj":"19864674-2#155#162#geners16910526","obj":"19864674-2#107#120#diseaseC0040261"}],"attributes":[{"subj":"19864674-2#155#162#geners16910526","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"19864674-2#79#103#diseaseC0700345","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"19864674-2#107#120#diseaseC0040261","pred":"source","obj":"DisGeNET5_variant_disease"}]},{"project":"DisGeNET5_gene_disease","denotations":[{"id":"19864674-0#6#14#gene64581","span":{"begin":6,"end":14},"obj":"gene64581"},{"id":"19864674-0#44#61#diseaseC0026946","span":{"begin":44,"end":61},"obj":"diseaseC0026946"},{"id":"19864674-2#191#199#gene64581","span":{"begin":352,"end":360},"obj":"gene64581"},{"id":"19864674-2#79#103#diseaseC0700345","span":{"begin":240,"end":264},"obj":"diseaseC0700345"},{"id":"19864674-2#107#120#diseaseC0040261","span":{"begin":268,"end":281},"obj":"diseaseC0040261"},{"id":"19864674-4#96#104#gene64581","span":{"begin":706,"end":714},"obj":"gene64581"},{"id":"19864674-4#205#213#gene64581","span":{"begin":815,"end":823},"obj":"gene64581"},{"id":"19864674-4#140#166#diseaseC1262313","span":{"begin":750,"end":776},"obj":"diseaseC1262313"}],"relations":[{"id":"6#14#gene6458144#61#diseaseC0026946","pred":"associated_with","subj":"19864674-0#6#14#gene64581","obj":"19864674-0#44#61#diseaseC0026946"},{"id":"191#199#gene6458179#103#diseaseC0700345","pred":"associated_with","subj":"19864674-2#191#199#gene64581","obj":"19864674-2#79#103#diseaseC0700345"},{"id":"191#199#gene64581107#120#diseaseC0040261","pred":"associated_with","subj":"19864674-2#191#199#gene64581","obj":"19864674-2#107#120#diseaseC0040261"},{"id":"96#104#gene64581140#166#diseaseC1262313","pred":"associated_with","subj":"19864674-4#96#104#gene64581","obj":"19864674-4#140#166#diseaseC1262313"},{"id":"205#213#gene64581140#166#diseaseC1262313","pred":"associated_with","subj":"19864674-4#205#213#gene64581","obj":"19864674-4#140#166#diseaseC1262313"}],"attributes":[{"subj":"19864674-0#6#14#gene64581","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19864674-0#44#61#diseaseC0026946","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19864674-2#191#199#gene64581","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19864674-2#79#103#diseaseC0700345","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19864674-2#107#120#diseaseC0040261","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19864674-4#96#104#gene64581","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19864674-4#205#213#gene64581","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19864674-4#140#166#diseaseC1262313","pred":"source","obj":"DisGeNET5_gene_disease"}]},{"project":"Inflammaging","denotations":[{"id":"T1","span":{"begin":0,"end":62},"obj":"Sentence"},{"id":"T2","span":{"begin":63,"end":160},"obj":"Sentence"},{"id":"T3","span":{"begin":161,"end":361},"obj":"Sentence"},{"id":"T4","span":{"begin":362,"end":609},"obj":"Sentence"},{"id":"T5","span":{"begin":610,"end":860},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":62},"obj":"Sentence"},{"id":"T2","span":{"begin":63,"end":160},"obj":"Sentence"},{"id":"T3","span":{"begin":161,"end":361},"obj":"Sentence"},{"id":"T4","span":{"begin":362,"end":609},"obj":"Sentence"},{"id":"T5","span":{"begin":610,"end":860},"obj":"Sentence"}],"attributes":[{"subj":"T1","pred":"source","obj":"Inflammaging"},{"subj":"T2","pred":"source","obj":"Inflammaging"},{"subj":"T3","pred":"source","obj":"Inflammaging"},{"subj":"T4","pred":"source","obj":"Inflammaging"},{"subj":"T5","pred":"source","obj":"Inflammaging"},{"subj":"T1","pred":"source","obj":"Inflammaging"},{"subj":"T2","pred":"source","obj":"Inflammaging"},{"subj":"T3","pred":"source","obj":"Inflammaging"},{"subj":"T4","pred":"source","obj":"Inflammaging"},{"subj":"T5","pred":"source","obj":"Inflammaging"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"DisGeNET","color":"#ecb393","default":true},{"id":"DisGeNET5_variant_disease","color":"#9993ec"},{"id":"DisGeNET5_gene_disease","color":"#a6ec93"},{"id":"Inflammaging","color":"#ec93c0"}]}]}}