PubMed:19789368 / 723-1050
Annnotations
LitCoin-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7 | 0-327 | Sentence | denotes | We analyzed for PIK3CA and KRAS mutations and LINE-1 methylation by Pyrosequencing, microsatellite instability (MSI), and DNA methylation (epigenetic changes) in eight CpG island methylator phenotype (CIMP)-specific promoters [CACNA1G, CDKN2A (p16), CRABP1, IGF2, MLH1, NEUROG1, RUNX3, and SOCS1] by MethyLight (real-time PCR). |
LitCoin-entities
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| 6538 | 16-22 | GeneOrGeneProduct | denotes | PIK3CA | NCBIGene:5290 |
| 6539 | 27-31 | GeneOrGeneProduct | denotes | KRAS | NCBIGene:3845 |
| 6540 | 227-234 | GeneOrGeneProduct | denotes | CACNA1G | NCBIGene:8913 |
| 6541 | 236-242 | GeneOrGeneProduct | denotes | CDKN2A | NCBIGene:1029 |
| 6542 | 244-247 | GeneOrGeneProduct | denotes | p16 | NCBIGene:1029 |
| 6543 | 250-256 | GeneOrGeneProduct | denotes | CRABP1 | NCBIGene:1381 |
| 6544 | 258-262 | GeneOrGeneProduct | denotes | IGF2 | NCBIGene:3481 |
| 6545 | 264-268 | GeneOrGeneProduct | denotes | MLH1 | NCBIGene:4292 |
| 6546 | 270-277 | GeneOrGeneProduct | denotes | NEUROG1 | NCBIGene:4762 |
| 6547 | 279-284 | GeneOrGeneProduct | denotes | RUNX3 | NCBIGene:864 |
| 6548 | 290-295 | GeneOrGeneProduct | denotes | SOCS1 | NCBIGene:8651 |
LitCoin-GeneOrGeneProduct-v0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T20 | 16-22 | GeneOrGeneProduct | denotes | PIK3CA |
| T21 | 27-31 | GeneOrGeneProduct | denotes | KRAS |
| T22 | 32-41 | GeneOrGeneProduct | denotes | mutations |
| T23 | 46-50 | GeneOrGeneProduct | denotes | LINE |
| T24 | 122-137 | GeneOrGeneProduct | denotes | DNA methylation |
| T25 | 227-234 | GeneOrGeneProduct | denotes | CACNA1G |
| T26 | 236-242 | GeneOrGeneProduct | denotes | CDKN2A |
| T27 | 250-256 | GeneOrGeneProduct | denotes | CRABP1 |
| T28 | 258-262 | GeneOrGeneProduct | denotes | IGF2 |
| T29 | 264-268 | GeneOrGeneProduct | denotes | MLH1 |
| T30 | 270-277 | GeneOrGeneProduct | denotes | NEUROG1 |
| T31 | 279-284 | GeneOrGeneProduct | denotes | RUNX3 |
| T32 | 290-295 | GeneOrGeneProduct | denotes | SOCS1 |
| T33 | 312-321 | GeneOrGeneProduct | denotes | real-time |
LitCoin-GeneOrGeneProduct-v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T18 | 16-22 | GeneOrGeneProduct | denotes | PIK3CA |
| T19 | 27-31 | GeneOrGeneProduct | denotes | KRAS |
| T20 | 122-137 | GeneOrGeneProduct | denotes | DNA methylation |
| T21 | 227-234 | GeneOrGeneProduct | denotes | CACNA1G |
| T22 | 236-242 | GeneOrGeneProduct | denotes | CDKN2A |
| T23 | 250-256 | GeneOrGeneProduct | denotes | CRABP1 |
| T24 | 258-262 | GeneOrGeneProduct | denotes | IGF2 |
| T25 | 264-268 | GeneOrGeneProduct | denotes | MLH1 |
| T26 | 270-277 | GeneOrGeneProduct | denotes | NEUROG1 |
| T27 | 279-284 | GeneOrGeneProduct | denotes | RUNX3 |
| T28 | 290-295 | GeneOrGeneProduct | denotes | SOCS1 |
| T29 | 312-321 | GeneOrGeneProduct | denotes | real-time |
LitCoin-Disease-MeSH
| Id | Subject | Object | Predicate | Lexical cue | originalLabel |
|---|---|---|---|---|---|
| T6 | 84-110 | DiseaseOrPhenotypicFeature | denotes | microsatellite instability | D053842 |
| T7 | 112-115 | DiseaseOrPhenotypicFeature | denotes | MSI | D053842 |
LitCoin-GeneOrGeneProduct-v3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17 | 16-22 | GeneOrGeneProduct | denotes | PIK3CA |
| T18 | 27-31 | GeneOrGeneProduct | denotes | KRAS |
| T19 | 227-234 | GeneOrGeneProduct | denotes | CACNA1G |
| T20 | 236-242 | GeneOrGeneProduct | denotes | CDKN2A |
| T21 | 250-256 | GeneOrGeneProduct | denotes | CRABP1 |
| T22 | 258-262 | GeneOrGeneProduct | denotes | IGF2 |
| T23 | 264-268 | GeneOrGeneProduct | denotes | MLH1 |
| T24 | 270-277 | GeneOrGeneProduct | denotes | NEUROG1 |
| T25 | 279-284 | GeneOrGeneProduct | denotes | RUNX3 |
| T26 | 290-295 | GeneOrGeneProduct | denotes | SOCS1 |
LitCoin-MeSH-Disease-2
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T7 | 84-110 | DiseaseOrPhenotypicFeature | denotes | microsatellite instability | D053842 |
| T8 | 112-115 | DiseaseOrPhenotypicFeature | denotes | MSI | D053842 |
LitCoin-Chemical-MeSH-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T7 | 168-171 | ChemicalEntity | denotes | CpG | http://purl.obolibrary.org/obo/CHEBI_165823 |
LitCoin-training-merged
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T7 | 168-171 | ChemicalEntity | denotes | CpG | http://purl.obolibrary.org/obo/CHEBI_165823 |
| T26 | 290-295 | GeneOrGeneProduct | denotes | SOCS1 | |
| T25 | 279-284 | GeneOrGeneProduct | denotes | RUNX3 | |
| T24 | 270-277 | GeneOrGeneProduct | denotes | NEUROG1 | |
| T23 | 264-268 | GeneOrGeneProduct | denotes | MLH1 | |
| T22 | 258-262 | GeneOrGeneProduct | denotes | IGF2 | |
| T21 | 250-256 | GeneOrGeneProduct | denotes | CRABP1 | |
| T20 | 236-242 | GeneOrGeneProduct | denotes | CDKN2A | |
| T19 | 227-234 | GeneOrGeneProduct | denotes | CACNA1G | |
| T18 | 27-31 | GeneOrGeneProduct | denotes | KRAS | |
| T17 | 16-22 | GeneOrGeneProduct | denotes | PIK3CA |