PubMed:19368346
Annnotations
Anatomy-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 933-940 | Body_part | denotes | stomach | http://purl.obolibrary.org/obo/MAT_0000051 |
mondo_disease
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 393-398 | Disease | denotes | tumor | http://purl.obolibrary.org/obo/MONDO_0005070 |
| T2 | 491-507 | Disease | denotes | malignant tumors | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T3 | 759-762 | Disease | denotes | PVA | http://purl.obolibrary.org/obo/MONDO_0020064 |
| T4 | 1265-1282 | Disease | denotes | pancreatic tumors | http://purl.obolibrary.org/obo/MONDO_0009831|http://purl.obolibrary.org/obo/MONDO_0021040 |
HP-phenotype
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 393-398 | Phenotype | denotes | tumor | HP:0002664 |
| T2 | 1265-1282 | Phenotype | denotes | pancreatic tumors | HP:0002894 |
Glycan-GlyCosmos
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 1013-1024 | Glycan | denotes | chondroitin | https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT |
GlyCosmos-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 1013-1024 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin | http://www.glycoepitope.jp/epitopes/EP0081 |
GlyCosmos15-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 393-398 | Phenotype | denotes | tumor | HP:0002664 |
| T2 | 1265-1282 | Phenotype | denotes | pancreatic tumors | HP:0002894 |
GlyCosmos15-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 393-398 | Disease | denotes | tumor | http://purl.obolibrary.org/obo/MONDO_0005070 |
| T2 | 491-507 | Disease | denotes | malignant tumors | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T3 | 759-762 | Disease | denotes | PVA | http://purl.obolibrary.org/obo/MONDO_0020064 |
| T4 | 1265-1282 | Disease | denotes | pancreatic tumors | http://purl.obolibrary.org/obo/MONDO_0009831|http://purl.obolibrary.org/obo/MONDO_0021040 |
GlyCosmos15-NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 1185-1190 | OrganismTaxon | denotes | human | 9606 |
| T2 | 1373-1378 | OrganismTaxon | denotes | human | 9606 |
GlyCosmos15-CL
| Id | Subject | Object | Predicate | Lexical cue | cl_id |
|---|---|---|---|---|---|
| T1 | 690-694 | Cell | denotes | poly | http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775 |
| T3 | 738-742 | Cell | denotes | poly | http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775 |
GlyCosmos15-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 20-26 | Body_part | denotes | matrix | http://purl.obolibrary.org/obo/UBERON_0027368 |
| T2 | 154-160 | Body_part | denotes | matrix | http://purl.obolibrary.org/obo/UBERON_0027368 |
| T3 | 240-246 | Body_part | denotes | matrix | http://purl.obolibrary.org/obo/UBERON_0027368 |
| T4 | 260-268 | Body_part | denotes | backbone | http://purl.obolibrary.org/obo/UBERON_0001130 |
| T5 | 725-733 | Body_part | denotes | membrane | http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158 |
| T8 | 771-779 | Body_part | denotes | backbone | http://purl.obolibrary.org/obo/UBERON_0001130 |
| T9 | 797-803 | Body_part | denotes | matrix | http://purl.obolibrary.org/obo/UBERON_0027368 |
| T10 | 870-879 | Body_part | denotes | capillary | http://purl.obolibrary.org/obo/UBERON_0001982 |
| T11 | 933-940 | Body_part | denotes | stomach | http://purl.obolibrary.org/obo/UBERON_0000945 |
| T12 | 1191-1207 | Body_part | denotes | pancreatic juice | http://purl.obolibrary.org/obo/UBERON_0000326 |
| T13 | 1379-1395 | Body_part | denotes | pancreatic juice | http://purl.obolibrary.org/obo/UBERON_0000326 |
GlyCosmos15-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 933-940 | Body_part | denotes | stomach | http://purl.obolibrary.org/obo/MAT_0000051 |
GlyCosmos15-Sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-93 | Sentence | denotes | Supported molecular matrix electrophoresis: a new tool for characterization of glycoproteins. |
| T2 | 94-198 | Sentence | denotes | A new concept of separation technology, supported molecular matrix electrophoresis (SMME), is described. |
| T3 | 199-279 | Sentence | denotes | In SMME, analytes migrate in a molecular matrix supported by backbone materials. |
| T4 | 280-376 | Sentence | denotes | Here we introduce a novel strategy for the separation and characterization of mucins using SMME. |
| T5 | 377-508 | Sentence | denotes | Mucin, a highly tumor-associated glycoprotein, has great potential as clinical biomarker for diagnosis of various malignant tumors. |
| T6 | 509-655 | Sentence | denotes | However, due to their large size, polymeric nature, and heterogeneous glycosylation, analysis of mucins has been left behind by modern techniques. |
| T7 | 656-827 | Sentence | denotes | For mucin analysis, we employed a poly(vinylidene difluoride) (PVDF) membrane and poly(vinyl alcohol) (PVA) as the backbone material and the matrix molecule, respectively. |
| T8 | 828-1077 | Sentence | denotes | Combining SMME with mass spectrometry and capillary electrophoresis, we demonstrate that a crude porcine stomach mucin consists of a neutral and a sulfated mucin and is contaminated by chondroitin sulfate-containing proteoglycan and hyaluronic acid. |
| T9 | 1078-1283 | Sentence | denotes | Furthermore, to demonstrate the feasibility of the strategy for biomarker discovery, we analyzed mucins in human pancreatic juice, which is an important source for clinical biomarkers of pancreatic tumors. |
| T10 | 1284-1396 | Sentence | denotes | This work revealed the presence of three types of mucin with distinct glycan profiles in human pancreatic juice. |
GlyCosmos15-Glycan
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 1013-1024 | Glycan | denotes | chondroitin | https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT |
GlyCosmos15-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 1013-1024 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin | http://www.glycoepitope.jp/epitopes/EP0081 |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 1185-1190 | OrganismTaxon | denotes | human | 9606 |
| T2 | 1373-1378 | OrganismTaxon | denotes | human | 9606 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 20-26 | Body_part | denotes | matrix | http://purl.obolibrary.org/obo/UBERON_0027368 |
| T2 | 154-160 | Body_part | denotes | matrix | http://purl.obolibrary.org/obo/UBERON_0027368 |
| T3 | 240-246 | Body_part | denotes | matrix | http://purl.obolibrary.org/obo/UBERON_0027368 |
| T4 | 260-268 | Body_part | denotes | backbone | http://purl.obolibrary.org/obo/UBERON_0001130 |
| T5 | 725-733 | Body_part | denotes | membrane | http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158 |
| T8 | 771-779 | Body_part | denotes | backbone | http://purl.obolibrary.org/obo/UBERON_0001130 |
| T9 | 797-803 | Body_part | denotes | matrix | http://purl.obolibrary.org/obo/UBERON_0027368 |
| T10 | 870-879 | Body_part | denotes | capillary | http://purl.obolibrary.org/obo/UBERON_0001982 |
| T11 | 933-940 | Body_part | denotes | stomach | http://purl.obolibrary.org/obo/UBERON_0000945 |
| T12 | 1191-1207 | Body_part | denotes | pancreatic juice | http://purl.obolibrary.org/obo/UBERON_0000326 |
| T13 | 1379-1395 | Body_part | denotes | pancreatic juice | http://purl.obolibrary.org/obo/UBERON_0000326 |
CL-cell
| Id | Subject | Object | Predicate | Lexical cue | cl_id |
|---|---|---|---|---|---|
| T1 | 690-694 | Cell | denotes | poly | http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775 |
| T3 | 738-742 | Cell | denotes | poly | http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775 |