PubMed:19365571 / 1195-1369 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/19365571","sourcedb":"PubMed","sourceid":"19365571","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/19365571","text":"The two transversions resulted in the substitution of a stop codon for glutamine at codon 298 (p.Q298X) and a missense mutation at codon 358, tyrosine to histidine (p.Y358H).","tracks":[{"project":"LitCoin-sentences","denotations":[{"id":"T13","span":{"begin":0,"end":174},"obj":"Sentence"}],"attributes":[{"subj":"T13","pred":"source","obj":"LitCoin-sentences"}]},{"project":"LitCoin-entities-OrganismTaxon-PD","denotations":[{"id":"T1","span":{"begin":61,"end":66},"obj":"OrganismTaxon"},{"id":"T2","span":{"begin":84,"end":89},"obj":"OrganismTaxon"},{"id":"T3","span":{"begin":131,"end":136},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"NCBItxid:79338"},{"id":"A2","pred":"db_id","subj":"T2","obj":"NCBItxid:79338"},{"id":"A3","pred":"db_id","subj":"T3","obj":"NCBItxid:79338"},{"subj":"T1","pred":"source","obj":"LitCoin-entities-OrganismTaxon-PD"},{"subj":"T2","pred":"source","obj":"LitCoin-entities-OrganismTaxon-PD"},{"subj":"T3","pred":"source","obj":"LitCoin-entities-OrganismTaxon-PD"}]},{"project":"LitCoin-entities","denotations":[{"id":"5980","span":{"begin":56,"end":93},"obj":"SequenceVariant"},{"id":"5981","span":{"begin":95,"end":102},"obj":"SequenceVariant"},{"id":"5982","span":{"begin":131,"end":163},"obj":"SequenceVariant"},{"id":"5983","span":{"begin":165,"end":172},"obj":"SequenceVariant"}],"attributes":[{"id":"A13","pred":"db_id","subj":"5980","obj":"p|SUB|Q|298|X"},{"id":"A14","pred":"db_id","subj":"5981","obj":"p|SUB|Q|298|X"},{"id":"A15","pred":"db_id","subj":"5982","obj":"p|SUB|Y|358|H"},{"id":"A16","pred":"db_id","subj":"5983","obj":"p|SUB|Y|358|H"},{"subj":"5980","pred":"source","obj":"LitCoin-entities"},{"subj":"5981","pred":"source","obj":"LitCoin-entities"},{"subj":"5982","pred":"source","obj":"LitCoin-entities"},{"subj":"5983","pred":"source","obj":"LitCoin-entities"}],"namespaces":[{"prefix":"_base","uri":"https://w3id.org/biolink/vocab/"},{"prefix":"MESH","uri":"http://id.nlm.nih.gov/mesh/"},{"prefix":"NCBITaxon","uri":"https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id="},{"prefix":"NCBIGene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"OMIM","uri":"https://www.omim.org/entry/"},{"prefix":"DBSNP","uri":"https://www.ncbi.nlm.nih.gov/snp/"}]},{"project":"LitCoin-SeqVar","denotations":[{"id":"T3","span":{"begin":95,"end":102},"obj":"SequenceVariant"},{"id":"T4","span":{"begin":165,"end":172},"obj":"SequenceVariant"}],"attributes":[{"subj":"T3","pred":"source","obj":"LitCoin-SeqVar"},{"subj":"T4","pred":"source","obj":"LitCoin-SeqVar"}]},{"project":"LitCoin-GeneOrGeneProduct-v0","denotations":[{"id":"T27","span":{"begin":56,"end":60},"obj":"GeneOrGeneProduct"},{"id":"T28","span":{"begin":71,"end":80},"obj":"GeneOrGeneProduct"},{"id":"T29","span":{"begin":110,"end":118},"obj":"GeneOrGeneProduct"},{"id":"T30","span":{"begin":119,"end":127},"obj":"GeneOrGeneProduct"},{"id":"T31","span":{"begin":142,"end":150},"obj":"GeneOrGeneProduct"}],"attributes":[{"subj":"T27","pred":"source","obj":"LitCoin-GeneOrGeneProduct-v0"},{"subj":"T28","pred":"source","obj":"LitCoin-GeneOrGeneProduct-v0"},{"subj":"T29","pred":"source","obj":"LitCoin-GeneOrGeneProduct-v0"},{"subj":"T30","pred":"source","obj":"LitCoin-GeneOrGeneProduct-v0"},{"subj":"T31","pred":"source","obj":"LitCoin-GeneOrGeneProduct-v0"}]},{"project":"LitCoin-GeneOrGeneProduct-v2","denotations":[{"id":"T18","span":{"begin":56,"end":60},"obj":"GeneOrGeneProduct"},{"id":"T19","span":{"begin":71,"end":80},"obj":"GeneOrGeneProduct"},{"id":"T20","span":{"begin":142,"end":150},"obj":"GeneOrGeneProduct"}],"attributes":[{"subj":"T18","pred":"source","obj":"LitCoin-GeneOrGeneProduct-v2"},{"subj":"T19","pred":"source","obj":"LitCoin-GeneOrGeneProduct-v2"},{"subj":"T20","pred":"source","obj":"LitCoin-GeneOrGeneProduct-v2"}]},{"project":"LitCoin-Chemical-MeSH-CHEBI","denotations":[{"id":"T4","span":{"begin":71,"end":80},"obj":"ChemicalEntity"},{"id":"T5","span":{"begin":142,"end":150},"obj":"ChemicalEntity"},{"id":"T6","span":{"begin":154,"end":163},"obj":"ChemicalEntity"}],"attributes":[{"id":"A4","pred":"ID:","subj":"T4","obj":"http://purl.obolibrary.org/obo/CHEBI_28300"},{"id":"A5","pred":"ID:","subj":"T5","obj":"http://purl.obolibrary.org/obo/CHEBI_18186"},{"id":"A6","pred":"ID:","subj":"T6","obj":"http://purl.obolibrary.org/obo/CHEBI_27570"},{"subj":"T4","pred":"source","obj":"LitCoin-Chemical-MeSH-CHEBI"},{"subj":"T5","pred":"source","obj":"LitCoin-Chemical-MeSH-CHEBI"},{"subj":"T6","pred":"source","obj":"LitCoin-Chemical-MeSH-CHEBI"}]},{"project":"LitCoin-training-merged","denotations":[{"id":"T6","span":{"begin":154,"end":163},"obj":"ChemicalEntity"},{"id":"T5","span":{"begin":142,"end":150},"obj":"ChemicalEntity"},{"id":"T4","span":{"begin":71,"end":80},"obj":"ChemicalEntity"},{"id":"T15391","span":{"begin":165,"end":172},"obj":"SequenceVariant"},{"id":"T35403","span":{"begin":95,"end":102},"obj":"SequenceVariant"}],"attributes":[{"id":"A6","pred":"ID:","subj":"T6","obj":"http://purl.obolibrary.org/obo/CHEBI_27570"},{"id":"A5","pred":"ID:","subj":"T5","obj":"http://purl.obolibrary.org/obo/CHEBI_18186"},{"id":"A4","pred":"ID:","subj":"T4","obj":"http://purl.obolibrary.org/obo/CHEBI_28300"},{"subj":"T6","pred":"source","obj":"LitCoin-training-merged"},{"subj":"T5","pred":"source","obj":"LitCoin-training-merged"},{"subj":"T4","pred":"source","obj":"LitCoin-training-merged"},{"subj":"T15391","pred":"source","obj":"LitCoin-training-merged"},{"subj":"T35403","pred":"source","obj":"LitCoin-training-merged"}]},{"project":"tmVarCorpus","denotations":[{"id":"T3","span":{"begin":95,"end":102},"obj":"ProteinMutation:p|SUB|Q|298|X"},{"id":"T4","span":{"begin":165,"end":172},"obj":"ProteinMutation:p|SUB|Y|358|H"}],"attributes":[{"subj":"T3","pred":"source","obj":"tmVarCorpus"},{"subj":"T4","pred":"source","obj":"tmVarCorpus"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCoin-sentences","color":"#ecde93","default":true},{"id":"LitCoin-entities-OrganismTaxon-PD","color":"#c493ec"},{"id":"LitCoin-entities","color":"#93ecaa"},{"id":"LitCoin-SeqVar","color":"#ec9396"},{"id":"LitCoin-GeneOrGeneProduct-v0","color":"#93b0ec"},{"id":"LitCoin-GeneOrGeneProduct-v2","color":"#caec93"},{"id":"LitCoin-Chemical-MeSH-CHEBI","color":"#ec93e4"},{"id":"LitCoin-training-merged","color":"#93ecda"},{"id":"tmVarCorpus","color":"#ecc093"}]}]}}