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PubMed:1930693 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 2-45 DNA denotes human putative lymphocyte G0/G1 switch gene
T2 59-74 DNA denotes CpG-rich island
T3 85-104 protein denotes small basic protein
T4 177-189 DNA denotes G0/G1 switch
T5 191-200 RNA denotes G0S genes
T6 245-251 protein denotes lectin
T7 270-281 cell_type denotes lymphocytes
T8 361-365 DNA denotes G0S2
T9 397-406 RNA denotes G0S genes
T10 418-423 DNA denotes cDNAs
T11 498-507 RNA denotes G0S2 mRNA
T12 563-569 protein denotes lectin
T13 590-622 cell_type denotes cultured blood mononuclear cells
T14 640-672 DNA denotes nearly full-length cDNA sequence
T15 696-712 DNA denotes genomic sequence
T16 745-763 DNA denotes open reading frame
T17 778-782 DNA denotes exon
T18 796-824 protein denotes 103-amino-acid basic protein
T19 843-864 protein denotes alpha-helical domains
T20 880-898 protein denotes hydrophobic region
T21 1009-1021 DNA denotes G0/G1 switch
T22 1083-1099 protein denotes protein kinase C
T23 1104-1120 protein denotes casein kinase II
T24 1142-1157 protein denotes CpG-rich island
T25 1201-1217 DNA denotes upstream segment
T26 1227-1254 DNA denotes tandem dinucleotide repeats
T27 1255-1268 DNA denotes (CT)19/(CA)16
T28 1298-1306 DNA denotes TATA box
T29 1332-1357 protein denotes CCAAT-box binding factors
T30 1390-1418 DNA denotes 42-nucleotide repeat element
T31 1440-1461 protein denotes transcription factors
T32 1462-1465 protein denotes AP1
T33 1467-1470 protein denotes AP2
T34 1476-1479 protein denotes AP3

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-145 Sentence denotes A human putative lymphocyte G0/G1 switch gene containing a CpG-rich island encodes a small basic protein with the potential to be phosphorylated.
S2 146-329 Sentence denotes Genes actively involved in the G0/G1 switch (G0S genes) may be differentially expressed during the lectin-induced switch of lymphocytes from the G0 to the G1 phases of the cell cycle.
S3 330-497 Sentence denotes This paper presents studies of G0S2, a member of a set of putative G0S genes, for which cDNAs were cloned and selected on the basis of differential cDNA hybridization.
S4 498-623 Sentence denotes G0S2 mRNA increases transiently within 1-2 hr of the addition of lectin or cycloheximide to cultured blood mononuclear cells.
S5 624-783 Sentence denotes Comparison of a nearly full-length cDNA sequence with the corresponding genomic sequence reveals one small intron and an open reading frame in the second exon.
S6 784-973 Sentence denotes The derived 103-amino-acid basic protein has two potential alpha-helical domains separated by a hydrophobic region with the potential to generate turns and assume a beta-sheet conformation.
S7 974-1121 Sentence denotes Consistent with involvement in the G0/G1 switch, the protein contains potential sites for phosphorylation by protein kinase C and casein kinase II.
S8 1122-1197 Sentence denotes The gene contains a CpG-rich island suggesting expression in the germ line.
S9 1198-1269 Sentence denotes An upstream segment contains tandem dinucleotide repeats (CT)19/(CA)16.
S10 1270-1419 Sentence denotes There is a suitably located TATA box, but potential sites for CCAAT-box binding factors are far upstream, embedded in a 42-nucleotide repeat element.
S11 1420-1564 Sentence denotes Potential sites for transcription factors AP1, AP2, and AP3 are consistent with rapid transcriptional activation in response to inducing agents.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C2 28-40 NP denotes G0/G1 switch
C1 0-45 NP denotes A human putative lymphocyte G0/G1 switch gene
C3 57-74 NP denotes a CpG-rich island
C4 83-104 NP denotes a small basic protein
C6 173-189 NP denotes the G0/G1 switch
C5 146-201 NP denotes Genes actively involved in the G0/G1 switch (G0S genes)
C7 361-365 NP denotes G0S2
C9 388-406 NP denotes putative G0S genes
C8 367-406 NP denotes a member of a set of putative G0S genes
C10 408-417 NP denotes for which
C11 784-824 NP denotes The derived 103-amino-acid basic protein
C12 1005-1021 NP denotes the G0/G1 switch
C15 1023-1034 NP denotes the protein
C13 1122-1130 NP denotes The gene
C14 1140-1157 NP denotes a CpG-rich island
R1 C6 C2 coref-ident the G0/G1 switch,G0/G1 switch
R2 C5 C1 coref-ident Genes actively involved in the G0/G1 switch (G0S genes),A human putative lymphocyte G0/G1 switch gene
R3 C9 C5 coref-ident putative G0S genes,Genes actively involved in the G0/G1 switch (G0S genes)
R4 C8 C7 coref-appos a member of a set of putative G0S genes,G0S2
R5 C10 C9 coref-relat for which,putative G0S genes
R6 C11 C4 coref-ident The derived 103-amino-acid basic protein,a small basic protein
R7 C12 C6 coref-ident the G0/G1 switch,the G0/G1 switch
R8 C15 C11 coref-ident the protein,The derived 103-amino-acid basic protein
R9 C13 C1 coref-ident The gene,A human putative lymphocyte G0/G1 switch gene
R10 C14 C3 coref-ident a CpG-rich island,a CpG-rich island

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 2-45 DNA_family_or_group denotes human putative lymphocyte G0/G1 switch gene
T2 59-74 DNA_domain_or_region denotes CpG-rich island
T3 85-104 protein_family_or_group denotes small basic protein
T4 177-189 DNA_domain_or_region denotes G0/G1 switch
T5 191-200 RNA_family_or_group denotes G0S genes
T6 245-251 protein_family_or_group denotes lectin
T7 270-281 cell_type denotes lymphocytes
T8 361-365 DNA_domain_or_region denotes G0S2
T9 397-406 RNA_family_or_group denotes G0S genes
T10 418-423 DNA_family_or_group denotes cDNAs
T11 478-496 other_name denotes cDNA hybridization
T12 498-507 RNA_family_or_group denotes G0S2 mRNA
T13 563-569 protein_family_or_group denotes lectin
T14 573-586 other_organic_compound denotes cycloheximide
T15 590-622 cell_type denotes cultured blood mononuclear cells
T16 640-672 DNA_domain_or_region denotes nearly full-length cDNA sequence
T17 696-712 DNA_domain_or_region denotes genomic sequence
T18 745-763 DNA_domain_or_region denotes open reading frame
T19 778-782 DNA_domain_or_region denotes exon
T20 796-824 protein_molecule denotes 103-amino-acid basic protein
T21 843-864 protein_domain_or_region denotes alpha-helical domains
T22 880-898 protein_domain_or_region denotes hydrophobic region
T23 949-972 other_name denotes beta-sheet conformation
T24 1009-1021 DNA_domain_or_region denotes G0/G1 switch
T25 1083-1099 protein_molecule denotes protein kinase C
T26 1104-1120 protein_molecule denotes casein kinase II
T27 1142-1157 protein_domain_or_region denotes CpG-rich island
T28 1201-1217 DNA_domain_or_region denotes upstream segment
T29 1227-1254 DNA_domain_or_region denotes tandem dinucleotide repeats
T30 1255-1268 DNA_domain_or_region denotes (CT)19/(CA)16
T31 1298-1306 DNA_domain_or_region denotes TATA box
T32 1332-1341 DNA_domain_or_region denotes CCAAT-box
T33 1390-1418 DNA_domain_or_region denotes 42-nucleotide repeat element
T34 1440-1461 protein_family_or_group denotes transcription factors
T35 1462-1465 protein_molecule denotes AP1
T36 1467-1470 protein_molecule denotes AP2
T37 1476-1479 protein_molecule denotes AP3
T38 1500-1532 other_name denotes rapid transcriptional activation