PubMed:19208385 / 510-722
Annnotations
LitCoin-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5 | 0-212 | Sentence | denotes | In all of these patients, OI was caused by glycine mutations affecting exon 49 of the COL1A2 gene, which codes for the most carboxy-terminal part of the triple-helical domain of the collagen type I alpha 2 chain. |
LitCoin-entities
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| 5793 | 16-24 | OrganismTaxon | denotes | patients | NCBITaxon:9606 |
| 5794 | 26-28 | DiseaseOrPhenotypicFeature | denotes | OI | MESH:D010013 |
| 5795 | 86-92 | GeneOrGeneProduct | denotes | COL1A2 | NCBIGene:1278 |
| 5796 | 182-205 | GeneOrGeneProduct | denotes | collagen type I alpha 2 | NCBIGene:1278 |
LitCoin-GeneOrGeneProduct-v0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T11 | 3-6 | GeneOrGeneProduct | denotes | all |
| T12 | 51-60 | GeneOrGeneProduct | denotes | mutations |
| T13 | 86-92 | GeneOrGeneProduct | denotes | COL1A2 |
| T14 | 141-145 | GeneOrGeneProduct | denotes | part |
| T15 | 182-211 | GeneOrGeneProduct | denotes | collagen type I alpha 2 chain |
LitCoin-GeneOrGeneProduct-v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3 | 86-92 | GeneOrGeneProduct | denotes | COL1A2 |
| T4 | 182-211 | GeneOrGeneProduct | denotes | collagen type I alpha 2 chain |
LitCoin-Disease-MeSH
| Id | Subject | Object | Predicate | Lexical cue | originalLabel |
|---|---|---|---|---|---|
| T13 | 26-28 | DiseaseOrPhenotypicFeature | denotes | OI | D010013 |
LitCoin-GeneOrGeneProduct-v3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2 | 86-92 | GeneOrGeneProduct | denotes | COL1A2 |
| T3 | 182-211 | GeneOrGeneProduct | denotes | collagen type I alpha 2 chain |
LitCoin_Mondo_095
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T15 | 26-28 | DiseaseOrPhenotypicFeature | denotes | OI | 0019019 |
LitCoin-MeSH-Disease-2
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T15 | 26-28 | DiseaseOrPhenotypicFeature | denotes | OI | D010013 |
LitCoin-MONDO_bioort2019
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T15 | 26-28 | DiseaseOrPhenotypicFeature | denotes | OI | D010013 |
LitCoin-Chemical-MeSH-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T1 | 43-50 | ChemicalEntity | denotes | glycine | http://purl.obolibrary.org/obo/CHEBI_57305|http://purl.obolibrary.org/obo/CHEBI_29947|http://purl.obolibrary.org/obo/CHEBI_15428 |
| T4 | 124-131 | ChemicalEntity | denotes | carboxy | http://purl.obolibrary.org/obo/CHEBI_46883 |
| T5 | 182-190 | ChemicalEntity | denotes | collagen | http://purl.obolibrary.org/obo/CHEBI_3815 |
LitCoin-NCBITaxon-2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3 | 16-24 | OrganismTaxon | denotes | patients |
LitCoin-training-merged
| Id | Subject | Object | Predicate | Lexical cue | #label | ID: |
|---|---|---|---|---|---|---|
| T5 | 182-190 | ChemicalEntity | denotes | collagen | http://purl.obolibrary.org/obo/CHEBI_3815 | |
| T4 | 124-131 | ChemicalEntity | denotes | carboxy | http://purl.obolibrary.org/obo/CHEBI_46883 | |
| T1 | 43-50 | ChemicalEntity | denotes | glycine | http://purl.obolibrary.org/obo/CHEBI_15428|http://purl.obolibrary.org/obo/CHEBI_29947|http://purl.obolibrary.org/obo/CHEBI_57305 | |
| T3 | 182-211 | GeneOrGeneProduct | denotes | collagen type I alpha 2 chain | ||
| T2 | 86-92 | GeneOrGeneProduct | denotes | COL1A2 | ||
| T15 | 26-28 | DiseaseOrPhenotypicFeature | denotes | OI | D010013 | |
| T12992 | 16-24 | OrganismTaxon | denotes | patients |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T5 | 0-212 | Sentence | denotes | In all of these patients, OI was caused by glycine mutations affecting exon 49 of the COL1A2 gene, which codes for the most carboxy-terminal part of the triple-helical domain of the collagen type I alpha 2 chain. |
| T5 | 0-212 | Sentence | denotes | In all of these patients, OI was caused by glycine mutations affecting exon 49 of the COL1A2 gene, which codes for the most carboxy-terminal part of the triple-helical domain of the collagen type I alpha 2 chain. |