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LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-144 Sentence denotes Hemodynamic parameters and heart rate variability during a tilt test in relation to gene polymorphism of renin-angiotensin and serotonin system.
T2 145-153 Sentence denotes PURPOSE:
T3 154-398 Sentence denotes The aim of the study was to evaluate the renin-angiotensin system and serotonin transporter gene polymorphisms in relation to hemodynamic parameters and heart rate variability during a head-up tilt test (HUT) in patients with vasovagal syncope.
T4 399-488 Sentence denotes METHODS: DNA was collected from 191 patients (mean age 44+/-18 years, 61 men, 130 women).
T5 489-998 Sentence denotes The following gene polymorphisms were determined in genomic DNA: angiotensin-converting enzyme insertion/deletion polymorphism (I/D ACE), angiotensinogen gene polymorphism (M 235), angiotensin II receptor type 1 (ATR1) polymorphism (A 11666C), and polymorphism of serotonin transporter gene (5HTTLPR).Heart rate variability during HUT was assessed in 5-minute intervals by low frequency, high frequency, standard deviation of the normal-to-normal (SDNN), and root mean square successive difference parameters.
T6 999-1608 Sentence denotes RESULTS: AA genotype of A 1166C polymorphism was associated with lower minimal systolic blood pressure (SBP) and diastolic blood pressure (DBP) during HUT compared with other genotypes (minimal SBP: AA 59.6+/-21,8, AC 79.9+/-22.7, CC 65.4+/-22.7 mmHg, P=0.007), (minimal DBP: AA 36.4+/-22.7, AC 52.3+/-22.9, CC 45.4+/-19.5 mmHg, P=0.007).AA genotype was also associated with higher SDNN compared to other genotypes in the early phase of HUT (SDNN in 5 minutes of tilt: AA 59.7+/-24.6, AC 50.6+/-20.6, CC 46.0+/-13.2, P=0.01) and at syncope occurrence (SDNN: AA 71.0+/-20.9, AC 58.2+/-17.9, CC 58+/-10, P=0.04)
T7 1609-1752 Sentence denotes CONCLUSION: AA genotype of A 1166C polymorphism in the ATR1 gene may be associated with hypotension and decline in sympathetic tone during HUT.
T8 1753-1828 Sentence denotes Its role in genetic predisposition to vasovagal syncope cannot be excluded.

LitCoin-entities-OrganismTaxon-PD

Id Subject Object Predicate Lexical cue db_id
T1 390-397 OrganismTaxon denotes syncope NCBItxid:1271638
T2 948-952 OrganismTaxon denotes root NCBItxid:1
T3 1531-1538 OrganismTaxon denotes syncope NCBItxid:1271638
T4 1801-1808 OrganismTaxon denotes syncope NCBItxid:1271638

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
5592 105-110 GeneOrGeneProduct denotes renin NCBIGene:5972
5593 111-122 GeneOrGeneProduct denotes angiotensin NCBIGene:183
5594 127-136 ChemicalEntity denotes serotonin MESH:D012701
5595 195-200 GeneOrGeneProduct denotes renin NCBIGene:5972
5596 201-212 GeneOrGeneProduct denotes angiotensin NCBIGene:183
5597 224-245 GeneOrGeneProduct denotes serotonin transporter NCBIGene:6532
5598 366-374 OrganismTaxon denotes patients NCBITaxon:9606
5599 380-397 DiseaseOrPhenotypicFeature denotes vasovagal syncope MESH:D019462
5600 435-443 OrganismTaxon denotes patients NCBITaxon:9606
5601 472-475 OrganismTaxon denotes men NCBITaxon:9606
5602 481-486 OrganismTaxon denotes women NCBITaxon:9606
5603 554-583 GeneOrGeneProduct denotes angiotensin-converting enzyme NCBIGene:1636
5604 621-624 GeneOrGeneProduct denotes ACE NCBIGene:1636
5605 627-642 GeneOrGeneProduct denotes angiotensinogen NCBIGene:183
5606 662-667 SequenceVariant denotes M 235 p|Allele|M|235
5607 670-700 GeneOrGeneProduct denotes angiotensin II receptor type 1 NCBIGene:185
5608 702-706 GeneOrGeneProduct denotes ATR1 NCBIGene:185
5609 722-730 SequenceVariant denotes A 11666C DBSNP:rs5186
5610 753-774 GeneOrGeneProduct denotes serotonin transporter NCBIGene:6532
5611 781-788 GeneOrGeneProduct denotes 5HTTLPR NCBIGene:6532
5612 1023-1030 SequenceVariant denotes A 1166C DBSNP:rs5186
5613 1531-1538 DiseaseOrPhenotypicFeature denotes syncope MESH:D013575
5614 1636-1643 SequenceVariant denotes A 1166C DBSNP:rs5186
5615 1664-1668 GeneOrGeneProduct denotes ATR1 NCBIGene:185
5616 1697-1708 DiseaseOrPhenotypicFeature denotes hypotension MESH:D007022
5617 1791-1808 DiseaseOrPhenotypicFeature denotes vasovagal syncope MESH:D019462

LitCoin-SeqVar

Id Subject Object Predicate Lexical cue
T1 724-730 SequenceVariant denotes 11666C
T2 1025-1030 SequenceVariant denotes 1166C
T3 1638-1643 SequenceVariant denotes 1166C

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 27-32 GeneOrGeneProduct denotes heart
T2 59-63 GeneOrGeneProduct denotes tilt
T3 64-68 GeneOrGeneProduct denotes test
T4 105-110 GeneOrGeneProduct denotes renin
T5 195-200 GeneOrGeneProduct denotes renin
T6 224-245 GeneOrGeneProduct denotes serotonin transporter
T7 307-312 GeneOrGeneProduct denotes heart
T8 347-351 GeneOrGeneProduct denotes tilt
T9 352-356 GeneOrGeneProduct denotes test
T10 399-406 GeneOrGeneProduct denotes METHODS
T11 462-467 GeneOrGeneProduct denotes years
T12 527-537 GeneOrGeneProduct denotes determined
T13 554-583 GeneOrGeneProduct denotes angiotensin-converting enzyme
T14 621-624 GeneOrGeneProduct denotes ACE
T15 627-642 GeneOrGeneProduct denotes angiotensinogen
T16 670-700 GeneOrGeneProduct denotes angiotensin II receptor type 1
T17 702-706 GeneOrGeneProduct denotes ATR1
T18 753-774 GeneOrGeneProduct denotes serotonin transporter
T19 781-788 GeneOrGeneProduct denotes 5HTTLPR
T20 790-795 GeneOrGeneProduct denotes Heart
T21 837-841 GeneOrGeneProduct denotes in 5
T22 842-848 GeneOrGeneProduct denotes minute
T23 866-875 GeneOrGeneProduct denotes frequency
T24 877-881 GeneOrGeneProduct denotes high
T25 882-891 GeneOrGeneProduct denotes frequency
T26 948-952 GeneOrGeneProduct denotes root
T27 958-964 GeneOrGeneProduct denotes square
T28 1168-1173 GeneOrGeneProduct denotes other
T29 1398-1403 GeneOrGeneProduct denotes other
T30 1421-1426 GeneOrGeneProduct denotes early
T31 1446-1450 GeneOrGeneProduct denotes in 5
T32 1451-1458 GeneOrGeneProduct denotes minutes
T33 1462-1466 GeneOrGeneProduct denotes tilt
T34 1664-1668 GeneOrGeneProduct denotes ATR1

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 27-32 GeneOrGeneProduct denotes heart
T2 59-63 GeneOrGeneProduct denotes tilt
T3 105-110 GeneOrGeneProduct denotes renin
T4 195-200 GeneOrGeneProduct denotes renin
T5 224-245 GeneOrGeneProduct denotes serotonin transporter
T6 307-312 GeneOrGeneProduct denotes heart
T7 347-351 GeneOrGeneProduct denotes tilt
T8 554-583 GeneOrGeneProduct denotes angiotensin-converting enzyme
T9 627-642 GeneOrGeneProduct denotes angiotensinogen
T10 670-700 GeneOrGeneProduct denotes angiotensin II receptor type 1
T11 702-706 GeneOrGeneProduct denotes ATR1
T12 753-774 GeneOrGeneProduct denotes serotonin transporter
T13 781-788 GeneOrGeneProduct denotes 5HTTLPR
T14 790-795 GeneOrGeneProduct denotes Heart
T15 842-848 GeneOrGeneProduct denotes minute
T16 866-875 GeneOrGeneProduct denotes frequency
T17 877-881 GeneOrGeneProduct denotes high
T18 882-891 GeneOrGeneProduct denotes frequency
T19 958-964 GeneOrGeneProduct denotes square
T20 1168-1173 GeneOrGeneProduct denotes other
T21 1398-1403 GeneOrGeneProduct denotes other
T22 1421-1426 GeneOrGeneProduct denotes early
T23 1462-1466 GeneOrGeneProduct denotes tilt
T24 1664-1668 GeneOrGeneProduct denotes ATR1

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 380-397 DiseaseOrPhenotypicFeature denotes vasovagal syncope D019462
T2 1531-1538 DiseaseOrPhenotypicFeature denotes syncope D013575
T3 1697-1708 DiseaseOrPhenotypicFeature denotes hypotension D007022
T4 1765-1787 DiseaseOrPhenotypicFeature denotes genetic predisposition D020022
T5 1791-1808 DiseaseOrPhenotypicFeature denotes vasovagal syncope D019462

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 105-110 GeneOrGeneProduct denotes renin
T2 195-200 GeneOrGeneProduct denotes renin
T3 224-245 GeneOrGeneProduct denotes serotonin transporter
T4 627-642 GeneOrGeneProduct denotes angiotensinogen
T5 670-700 GeneOrGeneProduct denotes angiotensin II receptor type 1
T6 702-706 GeneOrGeneProduct denotes ATR1
T7 753-774 GeneOrGeneProduct denotes serotonin transporter
T8 781-788 GeneOrGeneProduct denotes 5HTTLPR
T9 1664-1668 GeneOrGeneProduct denotes ATR1

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 472-475 DiseaseOrPhenotypicFeature denotes men 0017169
T2 1230-1232 DiseaseOrPhenotypicFeature denotes CC 0019087
T3 1307-1309 DiseaseOrPhenotypicFeature denotes CC 0019087
T4 1500-1502 DiseaseOrPhenotypicFeature denotes CC 0019087
T5 1589-1591 DiseaseOrPhenotypicFeature denotes CC 0019087
T6 1697-1708 DiseaseOrPhenotypicFeature denotes hypotension 0005468

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 380-397 DiseaseOrPhenotypicFeature denotes vasovagal syncope D019462
T2 1531-1538 DiseaseOrPhenotypicFeature denotes syncope D013575
T3 1697-1708 DiseaseOrPhenotypicFeature denotes hypotension D007022
T4 1765-1787 DiseaseOrPhenotypicFeature denotes genetic predisposition D020022
T5 1791-1808 DiseaseOrPhenotypicFeature denotes vasovagal syncope D019462

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 380-397 DiseaseOrPhenotypicFeature denotes vasovagal syncope D019462
T2 1531-1538 DiseaseOrPhenotypicFeature denotes syncope D013575
T3 1697-1708 DiseaseOrPhenotypicFeature denotes hypotension D007022
T4 1791-1808 DiseaseOrPhenotypicFeature denotes vasovagal syncope D019462

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 366-374 OrganismTaxon denotes patients
T2 435-443 OrganismTaxon denotes patients
T3 472-475 OrganismTaxon denotes men
T4 481-486 OrganismTaxon denotes women
T5 619-624 OrganismTaxon denotes D ACE
T6 948-952 OrganismTaxon denotes root

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 105-110 ChemicalEntity denotes renin D012083
T2 111-122 ChemicalEntity denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T3 127-136 ChemicalEntity denotes serotonin D012701|http://purl.obolibrary.org/obo/CHEBI_350546|http://purl.obolibrary.org/obo/CHEBI_28790
T6 195-200 ChemicalEntity denotes renin D012083
T7 201-212 ChemicalEntity denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T8 224-233 ChemicalEntity denotes serotonin D012701|http://purl.obolibrary.org/obo/CHEBI_350546|http://purl.obolibrary.org/obo/CHEBI_28790
T11 554-583 ChemicalEntity denotes angiotensin-converting enzyme D007703
T12 627-642 ChemicalEntity denotes angiotensinogen http://purl.obolibrary.org/obo/CHEBI_2720
T13 670-684 ChemicalEntity denotes angiotensin II http://purl.obolibrary.org/obo/CHEBI_58506|http://purl.obolibrary.org/obo/CHEBI_48432|http://purl.obolibrary.org/obo/CHEBI_2719
T16 753-762 ChemicalEntity denotes serotonin D012701|http://purl.obolibrary.org/obo/CHEBI_350546|http://purl.obolibrary.org/obo/CHEBI_28790
T19 1138-1141 ChemicalEntity denotes DBP http://purl.obolibrary.org/obo/CHEBI_35861|http://purl.obolibrary.org/obo/CHEBI_34687
T21 1270-1273 ChemicalEntity denotes DBP http://purl.obolibrary.org/obo/CHEBI_35861|http://purl.obolibrary.org/obo/CHEBI_34687

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label ID:
T19 1138-1141 ChemicalEntity denotes DBP http://purl.obolibrary.org/obo/CHEBI_34687|http://purl.obolibrary.org/obo/CHEBI_35861
T21 1270-1273 ChemicalEntity denotes DBP http://purl.obolibrary.org/obo/CHEBI_34687|http://purl.obolibrary.org/obo/CHEBI_35861
T16 753-762 ChemicalEntity denotes serotonin http://purl.obolibrary.org/obo/CHEBI_28790|http://purl.obolibrary.org/obo/CHEBI_350546|D012701
T13 670-684 ChemicalEntity denotes angiotensin II http://purl.obolibrary.org/obo/CHEBI_2719|http://purl.obolibrary.org/obo/CHEBI_48432|http://purl.obolibrary.org/obo/CHEBI_58506
T12 627-642 ChemicalEntity denotes angiotensinogen http://purl.obolibrary.org/obo/CHEBI_2720
T11 554-583 ChemicalEntity denotes angiotensin-converting enzyme D007703
T8 224-233 ChemicalEntity denotes serotonin http://purl.obolibrary.org/obo/CHEBI_28790|http://purl.obolibrary.org/obo/CHEBI_350546|D012701
T7 201-212 ChemicalEntity denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T6 195-200 ChemicalEntity denotes renin D012083
T3 127-136 ChemicalEntity denotes serotonin http://purl.obolibrary.org/obo/CHEBI_28790|http://purl.obolibrary.org/obo/CHEBI_350546|D012701
T2 111-122 ChemicalEntity denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T1 105-110 ChemicalEntity denotes renin D012083
T9 1664-1668 GeneOrGeneProduct denotes ATR1
T92146 781-788 GeneOrGeneProduct denotes 5HTTLPR
T18174 753-774 GeneOrGeneProduct denotes serotonin transporter
T53764 702-706 GeneOrGeneProduct denotes ATR1
T5 670-700 GeneOrGeneProduct denotes angiotensin II receptor type 1
T4 627-642 GeneOrGeneProduct denotes angiotensinogen
T87521 224-245 GeneOrGeneProduct denotes serotonin transporter
T29204 195-200 GeneOrGeneProduct denotes renin
T4596 105-110 GeneOrGeneProduct denotes renin
T34339 1791-1808 DiseaseOrPhenotypicFeature denotes vasovagal syncope D019462
T18876 1697-1708 DiseaseOrPhenotypicFeature denotes hypotension D007022
T23086 1531-1538 DiseaseOrPhenotypicFeature denotes syncope D013575
T57932 380-397 DiseaseOrPhenotypicFeature denotes vasovagal syncope D019462
T17176 948-952 OrganismTaxon denotes root
T86758 619-624 OrganismTaxon denotes D ACE
T26298 481-486 OrganismTaxon denotes women
T41515 472-475 OrganismTaxon denotes men
T50138 435-443 OrganismTaxon denotes patients
T26161 366-374 OrganismTaxon denotes patients
T11643 1638-1643 SequenceVariant denotes 1166C
T61231 1025-1030 SequenceVariant denotes 1166C
T86748 724-730 SequenceVariant denotes 11666C

DisGeNET

Id Subject Object Predicate Lexical cue
T0 195-200 gene:5972 denotes renin
T1 380-397 disease:C0042420 denotes vasovagal syncope
R1 T0 T1 associated_with renin,vasovagal syncope

tmVarCorpus

Id Subject Object Predicate Lexical cue
T1 722-730 DNAMutation:|SUB|A|11666|C denotes A 11666C
T2 1023-1030 DNAMutation:|SUB|A|1166|C denotes A 1166C
T3 1636-1643 DNAMutation:|SUB|A|1166|C denotes A 1166C