PubMed:19025767 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/19025767","sourcedb":"PubMed","sourceid":"19025767","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/19025767","text":"Leucine-rich repeat kinase 2 (LRRK2): a key player in the pathogenesis of Parkinson's disease.\nParkinson's disease (PD) is the most common neurodegenerative movement disorder, with a prevalence of more than 1% after the age of 65 years. Mutations in the gene encoding leucine-rich repeat kinase-2 (LRRK2) have recently been linked to autosomal dominant, late-onset PD that is clinically indistinguishable from typical, idiopathic disease. LRRK2 is a multidomain protein containing several protein interaction motifs as well as dual enzymatic domains of GTPase and protein kinase activities. Disease-associated mutations are found throughout the multidomain structure of the protein. LRRK2, however, is unique among the PD-causing genes, because a missense mutation, G2019S, is a frequent determinant of not only familial but also sporadic PD. Thus, LRRK2 has emerged as a promising therapeutic target for combating PD. In this Mini-Review, we look at the current state of knowledge regarding the domain structure, amino acid substitutions, and potential functional roles of LRRK2.","tracks":[{"project":"PubTator4TogoVar","denotations":[{"id":"19025767_0","span":{"begin":768,"end":774},"obj":"ProteinMutation"}],"attributes":[{"id":"19025767_0_ProteinMutation","pred":"proteinmutation","subj":"19025767_0","obj":"rs34637584"},{"subj":"19025767_0","pred":"source","obj":"PubTator4TogoVar"}]},{"project":"c_corpus","denotations":[{"id":"T2","span":{"begin":0,"end":7},"obj":"6308"},{"id":"T3","span":{"begin":0,"end":7},"obj":"SO:0001437"},{"id":"T1","span":{"begin":0,"end":7},"obj":"CHEBI:15603"},{"id":"T4","span":{"begin":0,"end":7},"obj":"D007930"},{"id":"T5","span":{"begin":0,"end":7},"obj":"CHEBI:25017"},{"id":"T6","span":{"begin":0,"end":7},"obj":"D007930"},{"id":"T7","span":{"begin":13,"end":19},"obj":"SO:0001068"},{"id":"T8","span":{"begin":30,"end":35},"obj":"PR:Q5S006"},{"id":"T9","span":{"begin":30,"end":35},"obj":"PR:000003033"},{"id":"T10","span":{"begin":30,"end":35},"obj":"PR:Q5S007"},{"id":"T11","span":{"begin":58,"end":70},"obj":"GO:0009405"},{"id":"T16","span":{"begin":74,"end":93},"obj":"D010300"},{"id":"T17","span":{"begin":74,"end":93},"obj":"D010300"},{"id":"T20","span":{"begin":107,"end":114},"obj":"D004194"},{"id":"T21","span":{"begin":107,"end":114},"obj":"D004194"},{"id":"T22","span":{"begin":139,"end":156},"obj":"D019636"},{"id":"T23","span":{"begin":139,"end":156},"obj":"D019636"},{"id":"T24","span":{"begin":157,"end":174},"obj":"D009069"},{"id":"T25","span":{"begin":157,"end":174},"obj":"D009069"},{"id":"T26","span":{"begin":254,"end":258},"obj":"SO:0000704"},{"id":"T28","span":{"begin":268,"end":275},"obj":"6308"},{"id":"T27","span":{"begin":268,"end":275},"obj":"CHEBI:15603"},{"id":"T30","span":{"begin":268,"end":275},"obj":"D007930"},{"id":"T31","span":{"begin":268,"end":275},"obj":"CHEBI:25017"},{"id":"T32","span":{"begin":268,"end":275},"obj":"D007930"},{"id":"T29","span":{"begin":268,"end":275},"obj":"SO:0001437"},{"id":"T33","span":{"begin":281,"end":287},"obj":"SO:0001068"},{"id":"T34","span":{"begin":298,"end":303},"obj":"PR:Q5S006"},{"id":"T35","span":{"begin":298,"end":303},"obj":"PR:000003033"},{"id":"T36","span":{"begin":298,"end":303},"obj":"PR:Q5S007"},{"id":"T37","span":{"begin":334,"end":352},"obj":"C566739"},{"id":"T38","span":{"begin":354,"end":364},"obj":"D000067562"},{"id":"T39","span":{"begin":354,"end":364},"obj":"D000067562"},{"id":"T40","span":{"begin":430,"end":437},"obj":"D004194"},{"id":"T41","span":{"begin":430,"end":437},"obj":"D004194"},{"id":"T42","span":{"begin":439,"end":444},"obj":"PR:Q5S006"},{"id":"T43","span":{"begin":439,"end":444},"obj":"PR:000003033"},{"id":"T44","span":{"begin":439,"end":444},"obj":"PR:Q5S007"},{"id":"T48","span":{"begin":462,"end":469},"obj":"PR:000000001"},{"id":"T46","span":{"begin":462,"end":469},"obj":"CHEBI:36080"},{"id":"T47","span":{"begin":462,"end":469},"obj":"CHEBI:11122"},{"id":"T49","span":{"begin":462,"end":469},"obj":"SO:0000104"},{"id":"T45","span":{"begin":462,"end":469},"obj":"GO:0003675"},{"id":"T53","span":{"begin":489,"end":496},"obj":"PR:000000001"},{"id":"T51","span":{"begin":489,"end":496},"obj":"CHEBI:36080"},{"id":"T52","span":{"begin":489,"end":496},"obj":"CHEBI:11122"},{"id":"T54","span":{"begin":489,"end":496},"obj":"SO:0000104"},{"id":"T50","span":{"begin":489,"end":496},"obj":"GO:0003675"},{"id":"T55","span":{"begin":532,"end":541},"obj":"SO:0001185"},{"id":"T56","span":{"begin":553,"end":559},"obj":"D020558"},{"id":"T60","span":{"begin":564,"end":571},"obj":"PR:000000001"},{"id":"T61","span":{"begin":564,"end":571},"obj":"SO:0000104"},{"id":"T57","span":{"begin":564,"end":571},"obj":"GO:0003675"},{"id":"T62","span":{"begin":564,"end":578},"obj":"D011494"},{"id":"T63","span":{"begin":591,"end":598},"obj":"D004194"},{"id":"T64","span":{"begin":591,"end":598},"obj":"D004194"},{"id":"T68","span":{"begin":674,"end":681},"obj":"PR:000000001"},{"id":"T66","span":{"begin":674,"end":681},"obj":"CHEBI:36080"},{"id":"T67","span":{"begin":674,"end":681},"obj":"CHEBI:11122"},{"id":"T69","span":{"begin":674,"end":681},"obj":"SO:0000104"},{"id":"T65","span":{"begin":674,"end":681},"obj":"GO:0003675"},{"id":"T70","span":{"begin":683,"end":688},"obj":"PR:Q5S006"},{"id":"T71","span":{"begin":683,"end":688},"obj":"PR:000003033"},{"id":"T72","span":{"begin":683,"end":688},"obj":"PR:Q5S007"},{"id":"T73","span":{"begin":747,"end":755},"obj":"SO:0001583"},{"id":"T74","span":{"begin":756,"end":764},"obj":"SO:0000109"},{"id":"T75","span":{"begin":849,"end":854},"obj":"PR:Q5S006"},{"id":"T76","span":{"begin":849,"end":854},"obj":"PR:000003033"},{"id":"T77","span":{"begin":849,"end":854},"obj":"PR:Q5S007"},{"id":"T78","span":{"begin":996,"end":1002},"obj":"SO:0000417"},{"id":"T80","span":{"begin":1014,"end":1024},"obj":"CHEBI:33704"},{"id":"T82","span":{"begin":1014,"end":1024},"obj":"CHEBI:33709"},{"id":"T81","span":{"begin":1014,"end":1024},"obj":"SO:0001237"},{"id":"T84","span":{"begin":1074,"end":1079},"obj":"PR:Q5S006"},{"id":"T85","span":{"begin":1074,"end":1079},"obj":"PR:000003033"},{"id":"T86","span":{"begin":1074,"end":1079},"obj":"PR:Q5S007"}],"attributes":[{"subj":"T2","pred":"source","obj":"c_corpus"},{"subj":"T3","pred":"source","obj":"c_corpus"},{"subj":"T1","pred":"source","obj":"c_corpus"},{"subj":"T4","pred":"source","obj":"c_corpus"},{"subj":"T5","pred":"source","obj":"c_corpus"},{"subj":"T6","pred":"source","obj":"c_corpus"},{"subj":"T7","pred":"source","obj":"c_corpus"},{"subj":"T8","pred":"source","obj":"c_corpus"},{"subj":"T9","pred":"source","obj":"c_corpus"},{"subj":"T10","pred":"source","obj":"c_corpus"},{"subj":"T11","pred":"source","obj":"c_corpus"},{"subj":"T16","pred":"source","obj":"c_corpus"},{"subj":"T17","pred":"source","obj":"c_corpus"},{"subj":"T20","pred":"source","obj":"c_corpus"},{"subj":"T21","pred":"source","obj":"c_corpus"},{"subj":"T22","pred":"source","obj":"c_corpus"},{"subj":"T23","pred":"source","obj":"c_corpus"},{"subj":"T24","pred":"source","obj":"c_corpus"},{"subj":"T25","pred":"source","obj":"c_corpus"},{"subj":"T26","pred":"source","obj":"c_corpus"},{"subj":"T28","pred":"source","obj":"c_corpus"},{"subj":"T27","pred":"source","obj":"c_corpus"},{"subj":"T30","pred":"source","obj":"c_corpus"},{"subj":"T31","pred":"source","obj":"c_corpus"},{"subj":"T32","pred":"source","obj":"c_corpus"},{"subj":"T29","pred":"source","obj":"c_corpus"},{"subj":"T33","pred":"source","obj":"c_corpus"},{"subj":"T34","pred":"source","obj":"c_corpus"},{"subj":"T35","pred":"source","obj":"c_corpus"},{"subj":"T36","pred":"source","obj":"c_corpus"},{"subj":"T37","pred":"source","obj":"c_corpus"},{"subj":"T38","pred":"source","obj":"c_corpus"},{"subj":"T39","pred":"source","obj":"c_corpus"},{"subj":"T40","pred":"source","obj":"c_corpus"},{"subj":"T41","pred":"source","obj":"c_corpus"},{"subj":"T42","pred":"source","obj":"c_corpus"},{"subj":"T43","pred":"source","obj":"c_corpus"},{"subj":"T44","pred":"source","obj":"c_corpus"},{"subj":"T48","pred":"source","obj":"c_corpus"},{"subj":"T46","pred":"source","obj":"c_corpus"},{"subj":"T47","pred":"source","obj":"c_corpus"},{"subj":"T49","pred":"source","obj":"c_corpus"},{"subj":"T45","pred":"source","obj":"c_corpus"},{"subj":"T53","pred":"source","obj":"c_corpus"},{"subj":"T51","pred":"source","obj":"c_corpus"},{"subj":"T52","pred":"source","obj":"c_corpus"},{"subj":"T54","pred":"source","obj":"c_corpus"},{"subj":"T50","pred":"source","obj":"c_corpus"},{"subj":"T55","pred":"source","obj":"c_corpus"},{"subj":"T56","pred":"source","obj":"c_corpus"},{"subj":"T60","pred":"source","obj":"c_corpus"},{"subj":"T61","pred":"source","obj":"c_corpus"},{"subj":"T57","pred":"source","obj":"c_corpus"},{"subj":"T62","pred":"source","obj":"c_corpus"},{"subj":"T63","pred":"source","obj":"c_corpus"},{"subj":"T64","pred":"source","obj":"c_corpus"},{"subj":"T68","pred":"source","obj":"c_corpus"},{"subj":"T66","pred":"source","obj":"c_corpus"},{"subj":"T67","pred":"source","obj":"c_corpus"},{"subj":"T69","pred":"source","obj":"c_corpus"},{"subj":"T65","pred":"source","obj":"c_corpus"},{"subj":"T70","pred":"source","obj":"c_corpus"},{"subj":"T71","pred":"source","obj":"c_corpus"},{"subj":"T72","pred":"source","obj":"c_corpus"},{"subj":"T73","pred":"source","obj":"c_corpus"},{"subj":"T74","pred":"source","obj":"c_corpus"},{"subj":"T75","pred":"source","obj":"c_corpus"},{"subj":"T76","pred":"source","obj":"c_corpus"},{"subj":"T77","pred":"source","obj":"c_corpus"},{"subj":"T78","pred":"source","obj":"c_corpus"},{"subj":"T80","pred":"source","obj":"c_corpus"},{"subj":"T82","pred":"source","obj":"c_corpus"},{"subj":"T81","pred":"source","obj":"c_corpus"},{"subj":"T84","pred":"source","obj":"c_corpus"},{"subj":"T85","pred":"source","obj":"c_corpus"},{"subj":"T86","pred":"source","obj":"c_corpus"}]},{"project":"PMID_GLOBAL","denotations":[{"id":"T1","span":{"begin":8,"end":12},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T2","span":{"begin":74,"end":93},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T3","span":{"begin":95,"end":114},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T4","span":{"begin":116,"end":118},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T7","span":{"begin":157,"end":174},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T8","span":{"begin":276,"end":280},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T9","span":{"begin":365,"end":367},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T12","span":{"begin":419,"end":437},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T13","span":{"begin":719,"end":721},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T16","span":{"begin":839,"end":841},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T19","span":{"begin":915,"end":917},"obj":"DiseaseOrPhenotypicFeature"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"0015404"},{"id":"A2","pred":"mondo_id","subj":"T2","obj":"0005180"},{"id":"A3","pred":"mondo_id","subj":"T3","obj":"0005180"},{"id":"A4","pred":"mondo_id","subj":"T4","obj":"0008199"},{"id":"A5","pred":"mondo_id","subj":"T4","obj":"0015873"},{"id":"A6","pred":"mondo_id","subj":"T4","obj":"0005180"},{"id":"A7","pred":"mondo_id","subj":"T7","obj":"0005395"},{"id":"A8","pred":"mondo_id","subj":"T8","obj":"0015404"},{"id":"A9","pred":"mondo_id","subj":"T9","obj":"0008199"},{"id":"A10","pred":"mondo_id","subj":"T9","obj":"0015873"},{"id":"A11","pred":"mondo_id","subj":"T9","obj":"0005180"},{"id":"A12","pred":"mondo_id","subj":"T12","obj":"0700007"},{"id":"A13","pred":"mondo_id","subj":"T13","obj":"0008199"},{"id":"A14","pred":"mondo_id","subj":"T13","obj":"0015873"},{"id":"A15","pred":"mondo_id","subj":"T13","obj":"0005180"},{"id":"A16","pred":"mondo_id","subj":"T16","obj":"0008199"},{"id":"A17","pred":"mondo_id","subj":"T16","obj":"0015873"},{"id":"A18","pred":"mondo_id","subj":"T16","obj":"0005180"},{"id":"A19","pred":"mondo_id","subj":"T19","obj":"0008199"},{"id":"A20","pred":"mondo_id","subj":"T19","obj":"0015873"},{"id":"A21","pred":"mondo_id","subj":"T19","obj":"0005180"},{"subj":"T1","pred":"source","obj":"PMID_GLOBAL"},{"subj":"T2","pred":"source","obj":"PMID_GLOBAL"},{"subj":"T3","pred":"source","obj":"PMID_GLOBAL"},{"subj":"T4","pred":"source","obj":"PMID_GLOBAL"},{"subj":"T7","pred":"source","obj":"PMID_GLOBAL"},{"subj":"T8","pred":"source","obj":"PMID_GLOBAL"},{"subj":"T9","pred":"source","obj":"PMID_GLOBAL"},{"subj":"T12","pred":"source","obj":"PMID_GLOBAL"},{"subj":"T13","pred":"source","obj":"PMID_GLOBAL"},{"subj":"T16","pred":"source","obj":"PMID_GLOBAL"},{"subj":"T19","pred":"source","obj":"PMID_GLOBAL"}]},{"project":"DisGeNET","denotations":[{"id":"T0","span":{"begin":298,"end":303},"obj":"gene:120892"},{"id":"T1","span":{"begin":419,"end":437},"obj":"disease:C0277553"}],"relations":[{"id":"R1","pred":"associated_with","subj":"T0","obj":"T1"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"attributes":[{"subj":"T0","pred":"source","obj":"DisGeNET"},{"subj":"T1","pred":"source","obj":"DisGeNET"}]},{"project":"PubMed_ArguminSci","denotations":[{"id":"T1","span":{"begin":95,"end":236},"obj":"DRI_Background"},{"id":"T2","span":{"begin":237,"end":438},"obj":"DRI_Background"},{"id":"T3","span":{"begin":439,"end":590},"obj":"DRI_Background"},{"id":"T4","span":{"begin":591,"end":682},"obj":"DRI_Background"},{"id":"T5","span":{"begin":683,"end":842},"obj":"DRI_Background"},{"id":"T6","span":{"begin":843,"end":918},"obj":"DRI_Challenge"},{"id":"T7","span":{"begin":919,"end":1080},"obj":"DRI_Challenge"}],"attributes":[{"subj":"T1","pred":"source","obj":"PubMed_ArguminSci"},{"subj":"T2","pred":"source","obj":"PubMed_ArguminSci"},{"subj":"T3","pred":"source","obj":"PubMed_ArguminSci"},{"subj":"T4","pred":"source","obj":"PubMed_ArguminSci"},{"subj":"T5","pred":"source","obj":"PubMed_ArguminSci"},{"subj":"T6","pred":"source","obj":"PubMed_ArguminSci"},{"subj":"T7","pred":"source","obj":"PubMed_ArguminSci"}]},{"project":"DisGeNET5_variant_disease","denotations":[{"id":"19025767-5#83#89#geners34637584","span":{"begin":766,"end":772},"obj":"geners34637584"},{"id":"19025767-5#36#38#diseaseC0030567","span":{"begin":719,"end":721},"obj":"diseaseC0030567"},{"id":"19025767-5#156#158#diseaseC0030567","span":{"begin":839,"end":841},"obj":"diseaseC0030567"}],"relations":[{"id":"83#89#geners3463758436#38#diseaseC0030567","pred":"associated_with","subj":"19025767-5#83#89#geners34637584","obj":"19025767-5#36#38#diseaseC0030567"},{"id":"83#89#geners34637584156#158#diseaseC0030567","pred":"associated_with","subj":"19025767-5#83#89#geners34637584","obj":"19025767-5#156#158#diseaseC0030567"}],"attributes":[{"subj":"19025767-5#83#89#geners34637584","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"19025767-5#36#38#diseaseC0030567","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"19025767-5#156#158#diseaseC0030567","pred":"source","obj":"DisGeNET5_variant_disease"}]},{"project":"DisGeNET5_gene_disease","denotations":[{"id":"19025767-0#0#28#gene120892","span":{"begin":0,"end":28},"obj":"gene120892"},{"id":"19025767-0#30#35#gene120892","span":{"begin":30,"end":35},"obj":"gene120892"},{"id":"19025767-0#74#93#diseaseC0030567","span":{"begin":74,"end":93},"obj":"diseaseC0030567"}],"relations":[{"id":"0#28#gene12089274#93#diseaseC0030567","pred":"associated_with","subj":"19025767-0#0#28#gene120892","obj":"19025767-0#74#93#diseaseC0030567"},{"id":"30#35#gene12089274#93#diseaseC0030567","pred":"associated_with","subj":"19025767-0#30#35#gene120892","obj":"19025767-0#74#93#diseaseC0030567"}],"attributes":[{"subj":"19025767-0#0#28#gene120892","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19025767-0#30#35#gene120892","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"19025767-0#74#93#diseaseC0030567","pred":"source","obj":"DisGeNET5_gene_disease"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"PubTator4TogoVar","color":"#ecc893","default":true},{"id":"c_corpus","color":"#ae93ec"},{"id":"PMID_GLOBAL","color":"#93ec94"},{"id":"DisGeNET","color":"#ec93ab"},{"id":"PubMed_ArguminSci","color":"#93c5ec"},{"id":"DisGeNET5_variant_disease","color":"#dfec93"},{"id":"DisGeNET5_gene_disease","color":"#de93ec"}]}]}}