> top > docs > PubMed:18702176 > annotations

PubMed:18702176 JSONTXT

Annnotations TAB JSON ListView MergeView

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-167 Sentence denotes Minimal disease monitoring by QRT-PCR: guidelines for identification and systematic validation of molecular markers prior to evaluation in prospective clinical trials.
TextSentencer_T2 168-347 Sentence denotes Real-time RT-PCR (QRT-PCR) is a sensitive method for the detection of minimal disease (MD) and may improve monitoring of disease status and stratification of patients for therapy.
TextSentencer_T3 348-495 Sentence denotes Where tumour-specific mRNAs have not been identified, the selection of which target(s) is(are) optimal for the detection of MD remains a challenge.
TextSentencer_T4 496-648 Sentence denotes This reflects the heterogeneity of tumour cells, the stability of mRNAs and low-level of transcription in cells of the normal haemopoietic compartments.
TextSentencer_T5 649-871 Sentence denotes The aim of this study was to establish for the first time guidelines for the systematic prioritization of potential markers of MD detected by QRT-PCR prior to evaluation in multicentre prospective clinical outcome studies.
TextSentencer_T6 872-1104 Sentence denotes We combined microarray analysis, ESTs gene expression profiles, improved probe-sets sequence annotation, and previously described standard operating procedures for QRT-PCR analysis to identify and prioritize potential markers of MD.
TextSentencer_T7 1105-1244 Sentence denotes Using this methodology, we identified 49 potential markers of MD in neuroblastoma (NB), of which 11 were associated with neuronal function.
TextSentencer_T8 1245-1365 Sentence denotes We found that, in addition to TH, Phox2B and DCX mRNA may be useful targets for the detection of MD in children with NB.
TextSentencer_T9 1366-1541 Sentence denotes This same strategy could be exploited to select MD markers of other solid tumours from the large number of potential targets identified by microarray gene expression profiles.
T1 0-167 Sentence denotes Minimal disease monitoring by QRT-PCR: guidelines for identification and systematic validation of molecular markers prior to evaluation in prospective clinical trials.
T2 168-347 Sentence denotes Real-time RT-PCR (QRT-PCR) is a sensitive method for the detection of minimal disease (MD) and may improve monitoring of disease status and stratification of patients for therapy.
T3 348-495 Sentence denotes Where tumour-specific mRNAs have not been identified, the selection of which target(s) is(are) optimal for the detection of MD remains a challenge.
T4 496-648 Sentence denotes This reflects the heterogeneity of tumour cells, the stability of mRNAs and low-level of transcription in cells of the normal haemopoietic compartments.
T5 649-871 Sentence denotes The aim of this study was to establish for the first time guidelines for the systematic prioritization of potential markers of MD detected by QRT-PCR prior to evaluation in multicentre prospective clinical outcome studies.
T6 872-1104 Sentence denotes We combined microarray analysis, ESTs gene expression profiles, improved probe-sets sequence annotation, and previously described standard operating procedures for QRT-PCR analysis to identify and prioritize potential markers of MD.
T7 1105-1244 Sentence denotes Using this methodology, we identified 49 potential markers of MD in neuroblastoma (NB), of which 11 were associated with neuronal function.
T8 1245-1365 Sentence denotes We found that, in addition to TH, Phox2B and DCX mRNA may be useful targets for the detection of MD in children with NB.
T9 1366-1541 Sentence denotes This same strategy could be exploited to select MD markers of other solid tumours from the large number of potential targets identified by microarray gene expression profiles.

DisGeNET

Id Subject Object Predicate Lexical cue
T0 1279-1285 gene:8929 denotes Phox2B
T1 1362-1364 disease:C0700095 denotes NB
T2 1279-1285 gene:8929 denotes Phox2B
T3 1362-1364 disease:C0027819 denotes NB
T4 1290-1293 gene:1641 denotes DCX
T5 1362-1364 disease:C0700095 denotes NB
T6 1290-1293 gene:1641 denotes DCX
T7 1362-1364 disease:C0027819 denotes NB
R1 T0 T1 associated_with Phox2B,NB
R2 T2 T3 associated_with Phox2B,NB
R3 T4 T5 associated_with DCX,NB
R4 T6 T7 associated_with DCX,NB

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
18702176-7#34#40#gene8929 1279-1285 gene8929 denotes Phox2B
18702176-7#45#48#gene1641 1290-1293 gene1641 denotes DCX
18702176-7#117#119#diseaseC0700095 1362-1364 diseaseC0700095 denotes NB
18702176-7#117#119#diseaseC0027819 1362-1364 diseaseC0027819 denotes NB
18702176-7#117#119#diseaseC0700095 1362-1364 diseaseC0700095 denotes NB
18702176-7#117#119#diseaseC0027819 1362-1364 diseaseC0027819 denotes NB
34#40#gene8929117#119#diseaseC0700095 18702176-7#34#40#gene8929 18702176-7#117#119#diseaseC0700095 associated_with Phox2B,NB
34#40#gene8929117#119#diseaseC0027819 18702176-7#34#40#gene8929 18702176-7#117#119#diseaseC0027819 associated_with Phox2B,NB
34#40#gene8929117#119#diseaseC0700095 18702176-7#34#40#gene8929 18702176-7#117#119#diseaseC0700095 associated_with Phox2B,NB
34#40#gene8929117#119#diseaseC0027819 18702176-7#34#40#gene8929 18702176-7#117#119#diseaseC0027819 associated_with Phox2B,NB
45#48#gene1641117#119#diseaseC0700095 18702176-7#45#48#gene1641 18702176-7#117#119#diseaseC0700095 associated_with DCX,NB
45#48#gene1641117#119#diseaseC0027819 18702176-7#45#48#gene1641 18702176-7#117#119#diseaseC0027819 associated_with DCX,NB
45#48#gene1641117#119#diseaseC0700095 18702176-7#45#48#gene1641 18702176-7#117#119#diseaseC0700095 associated_with DCX,NB
45#48#gene1641117#119#diseaseC0027819 18702176-7#45#48#gene1641 18702176-7#117#119#diseaseC0027819 associated_with DCX,NB

DisGeNet-2017-sample

Id Subject Object Predicate Lexical cue
T1991 1279-1285 gene:8929 denotes Phox2B
T1992 1362-1364 disease:C0700095 denotes NB
T1993 1290-1293 gene:1641 denotes DCX
R1 T1991 T1992 associated_with Phox2B,NB
R2 T1991 T1992 associated_with Phox2B,NB
R3 T1993 T1992 associated_with DCX,NB
R4 T1993 T1992 associated_with DCX,NB

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 1226-1234 http://purl.obolibrary.org/obo/UBERON_2000602 denotes neuronal