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{"target":"http://pubannotation.org/docs/sourcedb/PubMed/sourceid/18639657","sourcedb":"PubMed","sourceid":"18639657","source_url":"https://www.ncbi.nlm.nih.gov/pubmed/18639657","text":"Protein identification pipeline for the homology-driven proteomics.\nHomology-driven proteomics is a major tool to characterize proteomes of organisms with unsequenced genomes. This paper addresses practical aspects of automated homology-driven protein identifications by LC-MS/MS on a hybrid LTQ Orbitrap mass spectrometer. All essential software elements supporting the presented pipeline are either hosted at the publicly accessible web server, or are available for free 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