PubMed:18509110 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/18509110","sourcedb":"PubMed","sourceid":"18509110","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/18509110","text":"Temperature-dependent cooperativity in donor-acceptor substrate binding to the human blood group glycosyltransferases.\nAffinities of the human blood group glycosyltransferases, alpha-(1--\u003e3)-N-acetylgalactosaminyltransferase (GTA) and alpha-(1--\u003e3)-galactosyltransferase (GTB) for their common acceptor substrate alpha-l-Fucp-(1--\u003e2)-beta-d-Galp-O(CH2)(7)CH3 (1), in the absence and presence of bound uridine 5'-diphosphate (UDP) and Mn2+ were determined using temperature-controlled electrospray ionization mass spectrometry. The presence of bound UDP and Mn(2+) in the donor binding site has a marked influence on the thermodynamic parameters for the association of 1 with GTA and GTB. Both the enthalpy and entropy of association (DeltaH(a), DeltaS(a)) decrease significantly. However, the free energy of association (DeltaG(a)) is unchanged at physiological temperature. The differences in the DeltaH(a) and DeltaS(a) values determined in the presence and absence of bound UDP are attributed to structural changes in the glycosyltransferases induced by the simultaneous binding of 1 and UDP.","tracks":[{"project":"performance-test","denotations":[{"id":"PD-UBERON-AE-B_T1","span":{"begin":85,"end":90},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"PD-UBERON-AE-B_T2","span":{"begin":143,"end":148},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"}],"attributes":[{"subj":"PD-UBERON-AE-B_T1","pred":"source","obj":"performance-test"},{"subj":"PD-UBERON-AE-B_T2","pred":"source","obj":"performance-test"}]},{"project":"uniprot-human","denotations":[{"id":"T1","span":{"begin":188,"end":224},"obj":"http://www.uniprot.org/uniprot/Q70JA7"},{"id":"T2","span":{"begin":188,"end":224},"obj":"http://www.uniprot.org/uniprot/Q14435"}],"attributes":[{"subj":"T1","pred":"source","obj":"uniprot-human"},{"subj":"T2","pred":"source","obj":"uniprot-human"}]},{"project":"uniprot-mouse","denotations":[{"id":"T1","span":{"begin":188,"end":224},"obj":"http://www.uniprot.org/uniprot/Q5DTK1"},{"id":"T2","span":{"begin":249,"end":270},"obj":"http://www.uniprot.org/uniprot/P23336"}],"attributes":[{"subj":"T1","pred":"source","obj":"uniprot-mouse"},{"subj":"T2","pred":"source","obj":"uniprot-mouse"}]},{"project":"GlycoBiology-MAT","denotations":[{"id":"T1","span":{"begin":85,"end":90},"obj":"http://purl.obolibrary.org/obo/MAT_0000315"},{"id":"T2","span":{"begin":85,"end":90},"obj":"http://purl.obolibrary.org/obo/MAT_0000083"},{"id":"T3","span":{"begin":143,"end":148},"obj":"http://purl.obolibrary.org/obo/MAT_0000315"},{"id":"T4","span":{"begin":143,"end":148},"obj":"http://purl.obolibrary.org/obo/MAT_0000083"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-MAT"},{"subj":"T2","pred":"source","obj":"GlycoBiology-MAT"},{"subj":"T3","pred":"source","obj":"GlycoBiology-MAT"},{"subj":"T4","pred":"source","obj":"GlycoBiology-MAT"}]},{"project":"GlycoBiology-NCBITAXON","denotations":[{"id":"T1","span":{"begin":91,"end":96},"obj":"http://purl.bioontology.org/ontology/STY/T096"},{"id":"T2","span":{"begin":149,"end":154},"obj":"http://purl.bioontology.org/ontology/STY/T096"},{"id":"T3","span":{"begin":334,"end":338},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/158455"},{"id":"T4","span":{"begin":334,"end":338},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/3554"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T2","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T3","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T4","pred":"source","obj":"GlycoBiology-NCBITAXON"}]},{"project":"sentences","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":118},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":119,"end":526},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":527,"end":687},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":688,"end":779},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":780,"end":874},"obj":"Sentence"},{"id":"TextSentencer_T6","span":{"begin":875,"end":1095},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":118},"obj":"Sentence"},{"id":"T2","span":{"begin":119,"end":526},"obj":"Sentence"},{"id":"T3","span":{"begin":527,"end":687},"obj":"Sentence"},{"id":"T4","span":{"begin":688,"end":779},"obj":"Sentence"},{"id":"T5","span":{"begin":780,"end":874},"obj":"Sentence"},{"id":"T6","span":{"begin":875,"end":1095},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":118},"obj":"Sentence"},{"id":"T2","span":{"begin":119,"end":526},"obj":"Sentence"},{"id":"T3","span":{"begin":527,"end":687},"obj":"Sentence"},{"id":"T4","span":{"begin":688,"end":779},"obj":"Sentence"},{"id":"T5","span":{"begin":780,"end":874},"obj":"Sentence"},{"id":"T6","span":{"begin":875,"end":1095},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"TextSentencer_T1","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T2","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T3","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T4","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T5","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T6","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"}]},{"project":"GO-MF","denotations":[{"id":"T1","span":{"begin":64,"end":71},"obj":"http://purl.obolibrary.org/obo/GO_0070026"},{"id":"T2","span":{"begin":577,"end":584},"obj":"http://purl.obolibrary.org/obo/GO_0070026"},{"id":"T3","span":{"begin":1074,"end":1081},"obj":"http://purl.obolibrary.org/obo/GO_0070026"},{"id":"T4","span":{"begin":64,"end":71},"obj":"http://purl.obolibrary.org/obo/GO_0003680"},{"id":"T5","span":{"begin":577,"end":584},"obj":"http://purl.obolibrary.org/obo/GO_0003680"},{"id":"T6","span":{"begin":1074,"end":1081},"obj":"http://purl.obolibrary.org/obo/GO_0003680"},{"id":"T7","span":{"begin":64,"end":71},"obj":"http://purl.obolibrary.org/obo/GO_0017091"},{"id":"T8","span":{"begin":577,"end":584},"obj":"http://purl.obolibrary.org/obo/GO_0017091"},{"id":"T9","span":{"begin":1074,"end":1081},"obj":"http://purl.obolibrary.org/obo/GO_0017091"},{"id":"T10","span":{"begin":64,"end":71},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T11","span":{"begin":577,"end":584},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T12","span":{"begin":1074,"end":1081},"obj":"http://purl.obolibrary.org/obo/GO_0005488"}],"attributes":[{"subj":"T1","pred":"source","obj":"GO-MF"},{"subj":"T2","pred":"source","obj":"GO-MF"},{"subj":"T3","pred":"source","obj":"GO-MF"},{"subj":"T4","pred":"source","obj":"GO-MF"},{"subj":"T5","pred":"source","obj":"GO-MF"},{"subj":"T6","pred":"source","obj":"GO-MF"},{"subj":"T7","pred":"source","obj":"GO-MF"},{"subj":"T8","pred":"source","obj":"GO-MF"},{"subj":"T9","pred":"source","obj":"GO-MF"},{"subj":"T10","pred":"source","obj":"GO-MF"},{"subj":"T11","pred":"source","obj":"GO-MF"},{"subj":"T12","pred":"source","obj":"GO-MF"}]},{"project":"UBERON-AE","denotations":[{"id":"T1","span":{"begin":85,"end":90},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"T2","span":{"begin":143,"end":148},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"}],"attributes":[{"subj":"T1","pred":"source","obj":"UBERON-AE"},{"subj":"T2","pred":"source","obj":"UBERON-AE"}]},{"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":79,"end":84},"obj":"OrganismTaxon"},{"id":"T2","span":{"begin":137,"end":142},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"9606"},{"id":"A2","pred":"db_id","subj":"T2","obj":"9606"},{"subj":"T1","pred":"source","obj":"NCBITAXON"},{"subj":"T2","pred":"source","obj":"NCBITAXON"}]},{"project":"GlycoBiology-Motifs","denotations":[{"id":"T1","span":{"begin":85,"end":96},"obj":"http://rdf.glycoinfo.org/glycan/G00066MO"},{"id":"T2","span":{"begin":143,"end":154},"obj":"http://rdf.glycoinfo.org/glycan/G00066MO"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-Motifs"},{"subj":"T2","pred":"source","obj":"GlycoBiology-Motifs"}]},{"project":"Glycosmos6-MAT","denotations":[{"id":"T1","span":{"begin":85,"end":90},"obj":"http://purl.obolibrary.org/obo/MAT_0000083"},{"id":"T2","span":{"begin":85,"end":90},"obj":"http://purl.obolibrary.org/obo/MAT_0000315"},{"id":"T3","span":{"begin":143,"end":148},"obj":"http://purl.obolibrary.org/obo/MAT_0000083"},{"id":"T4","span":{"begin":143,"end":148},"obj":"http://purl.obolibrary.org/obo/MAT_0000315"}],"attributes":[{"subj":"T1","pred":"source","obj":"Glycosmos6-MAT"},{"subj":"T2","pred":"source","obj":"Glycosmos6-MAT"},{"subj":"T3","pred":"source","obj":"Glycosmos6-MAT"},{"subj":"T4","pred":"source","obj":"Glycosmos6-MAT"}]},{"project":"Anatomy-MAT","denotations":[{"id":"T1","span":{"begin":85,"end":90},"obj":"Body_part"},{"id":"T3","span":{"begin":143,"end":148},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"mat_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MAT_0000083"},{"id":"A2","pred":"mat_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MAT_0000315"},{"id":"A3","pred":"mat_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MAT_0000083"},{"id":"A4","pred":"mat_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MAT_0000315"},{"subj":"T1","pred":"source","obj":"Anatomy-MAT"},{"subj":"T3","pred":"source","obj":"Anatomy-MAT"}]},{"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":85,"end":90},"obj":"Body_part"},{"id":"T2","span":{"begin":143,"end":148},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"subj":"T1","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T2","pred":"source","obj":"Anatomy-UBERON"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"performance-test","color":"#ec9993","default":true},{"id":"uniprot-human","color":"#93a7ec"},{"id":"uniprot-mouse","color":"#c1ec93"},{"id":"GlycoBiology-MAT","color":"#ec93db"},{"id":"GlycoBiology-NCBITAXON","color":"#93ece3"},{"id":"sentences","color":"#ecc993"},{"id":"GO-MF","color":"#af93ec"},{"id":"UBERON-AE","color":"#93ec95"},{"id":"NCBITAXON","color":"#ec93ab"},{"id":"GlycoBiology-Motifs","color":"#93c5ec"},{"id":"Glycosmos6-MAT","color":"#dfec93"},{"id":"Anatomy-MAT","color":"#df93ec"},{"id":"Anatomy-UBERON","color":"#93ecc5"}]}]}}