PubMed:18305110
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/18305110","sourcedb":"PubMed","sourceid":"18305110","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/18305110","text":"Disturbance of nuclear and cytoplasmic TAR DNA-binding protein (TDP-43) induces disease-like redistribution, sequestration, and aggregate formation.\nTAR DNA-binding protein 43 (TDP-43) is the disease protein in frontotemporal lobar degeneration with ubiquitin-positive inclusions (FTLD-U) and amyotrophic lateral sclerosis (ALS). Although normal TDP-43 is a nuclear protein, pathological TDP-43 is redistributed and sequestered as insoluble aggregates in neuronal nuclei, perikarya, and neurites. Here we recapitulate these pathological phenotypes in cultured cells by altering endogenous TDP-43 nuclear trafficking and by expressing mutants with defective nuclear localization (TDP-43-DeltaNLS) or nuclear export signals (TDP-43-DeltaNES). Restricting endogenous cytoplasmic TDP-43 from entering the nucleus or preventing its exit out of the nucleus resulted in TDP-43 aggregate formation. TDP-43-DeltaNLS accumulates as insoluble cytoplasmic aggregates and sequesters endogenous TDP-43, thereby depleting normal nuclear TDP-43, whereas TDP-43-DeltaNES forms insoluble nuclear aggregates with endogenous TDP-43. Mutant forms of TDP-43 also replicate the biochemical profile of pathological TDP-43 in FTLD-U/ALS. Thus, FTLD-U/ALS pathogenesis may be linked mechanistically to deleterious perturbations of nuclear trafficking and solubility of TDP-43.","tracks":[{"project":"PMID_GLOBAL","denotations":[{"id":"T1","span":{"begin":39,"end":42},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T2","span":{"begin":149,"end":152},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T3","span":{"begin":211,"end":244},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T4","span":{"begin":293,"end":322},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T5","span":{"begin":324,"end":327},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T6","span":{"begin":1208,"end":1211},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T7","span":{"begin":1226,"end":1229},"obj":"DiseaseOrPhenotypicFeature"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"0010121"},{"id":"A2","pred":"mondo_id","subj":"T2","obj":"0010121"},{"id":"A3","pred":"mondo_id","subj":"T3","obj":"0017276"},{"id":"A4","pred":"mondo_id","subj":"T4","obj":"0004976"},{"id":"A5","pred":"mondo_id","subj":"T5","obj":"0004976"},{"id":"A6","pred":"mondo_id","subj":"T6","obj":"0004976"},{"id":"A7","pred":"mondo_id","subj":"T7","obj":"0004976"},{"subj":"T1","pred":"source","obj":"PMID_GLOBAL"},{"subj":"T2","pred":"source","obj":"PMID_GLOBAL"},{"subj":"T3","pred":"source","obj":"PMID_GLOBAL"},{"subj":"T4","pred":"source","obj":"PMID_GLOBAL"},{"subj":"T5","pred":"source","obj":"PMID_GLOBAL"},{"subj":"T6","pred":"source","obj":"PMID_GLOBAL"},{"subj":"T7","pred":"source","obj":"PMID_GLOBAL"}]},{"project":"sentences","denotations":[{"id":"T1","span":{"begin":0,"end":148},"obj":"Sentence"},{"id":"T2","span":{"begin":149,"end":329},"obj":"Sentence"},{"id":"T3","span":{"begin":330,"end":496},"obj":"Sentence"},{"id":"T4","span":{"begin":497,"end":740},"obj":"Sentence"},{"id":"T5","span":{"begin":741,"end":890},"obj":"Sentence"},{"id":"T6","span":{"begin":891,"end":1112},"obj":"Sentence"},{"id":"T7","span":{"begin":1113,"end":1212},"obj":"Sentence"},{"id":"T8","span":{"begin":1213,"end":1350},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T8","pred":"source","obj":"sentences"}]},{"project":"Glycosmos6-MAT","denotations":[{"id":"T1","span":{"begin":305,"end":312},"obj":"http://purl.obolibrary.org/obo/MAT_0000488"}],"attributes":[{"subj":"T1","pred":"source","obj":"Glycosmos6-MAT"}]},{"project":"DisGeNET","denotations":[{"id":"T0","span":{"begin":1343,"end":1349},"obj":"gene:23435"},{"id":"T1","span":{"begin":1226,"end":1229},"obj":"disease:C0002736"}],"relations":[{"id":"R1","pred":"associated_with","subj":"T0","obj":"T1"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"attributes":[{"subj":"T0","pred":"source","obj":"DisGeNET"},{"subj":"T1","pred":"source","obj":"DisGeNET"}]},{"project":"bionlp-st-epi-2011-training","denotations":[{"id":"T1","span":{"begin":64,"end":70},"obj":"Protein"},{"id":"T2","span":{"begin":149,"end":175},"obj":"Protein"},{"id":"T3","span":{"begin":177,"end":183},"obj":"Protein"},{"id":"T4","span":{"begin":250,"end":259},"obj":"Protein"},{"id":"T5","span":{"begin":346,"end":352},"obj":"Protein"},{"id":"T6","span":{"begin":388,"end":394},"obj":"Protein"},{"id":"T7","span":{"begin":589,"end":595},"obj":"Protein"},{"id":"T8","span":{"begin":679,"end":685},"obj":"Protein"},{"id":"T9","span":{"begin":723,"end":729},"obj":"Protein"},{"id":"T10","span":{"begin":776,"end":782},"obj":"Protein"},{"id":"T11","span":{"begin":863,"end":869},"obj":"Protein"},{"id":"T12","span":{"begin":891,"end":897},"obj":"Protein"},{"id":"T13","span":{"begin":981,"end":987},"obj":"Protein"},{"id":"T14","span":{"begin":1022,"end":1028},"obj":"Protein"},{"id":"T15","span":{"begin":1038,"end":1044},"obj":"Protein"},{"id":"T16","span":{"begin":1105,"end":1111},"obj":"Protein"},{"id":"T17","span":{"begin":1129,"end":1135},"obj":"Protein"},{"id":"T18","span":{"begin":1191,"end":1197},"obj":"Protein"},{"id":"T19","span":{"begin":1343,"end":1349},"obj":"Protein"}],"attributes":[{"subj":"T1","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T2","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T3","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T4","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T5","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T6","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T7","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T8","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T9","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T10","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T11","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T12","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T13","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T14","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T15","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T16","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T17","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T18","pred":"source","obj":"bionlp-st-epi-2011-training"},{"subj":"T19","pred":"source","obj":"bionlp-st-epi-2011-training"}]},{"project":"DisGeNET5_gene_disease","denotations":[{"id":"18305110-6#16#22#gene23435","span":{"begin":1129,"end":1135},"obj":"gene23435"},{"id":"18305110-6#78#84#gene23435","span":{"begin":1191,"end":1197},"obj":"gene23435"},{"id":"18305110-6#88#94#diseaseC0338451","span":{"begin":1201,"end":1207},"obj":"diseaseC0338451"},{"id":"18305110-6#88#94#diseaseC1843792","span":{"begin":1201,"end":1207},"obj":"diseaseC1843792"},{"id":"18305110-6#88#94#diseaseC0338451","span":{"begin":1201,"end":1207},"obj":"diseaseC0338451"},{"id":"18305110-6#88#94#diseaseC1843792","span":{"begin":1201,"end":1207},"obj":"diseaseC1843792"},{"id":"18305110-7#130#136#gene23435","span":{"begin":1343,"end":1349},"obj":"gene23435"},{"id":"18305110-7#13#16#diseaseC0002736","span":{"begin":1226,"end":1229},"obj":"diseaseC0002736"}],"relations":[{"id":"16#22#gene2343588#94#diseaseC0338451","pred":"associated_with","subj":"18305110-6#16#22#gene23435","obj":"18305110-6#88#94#diseaseC0338451"},{"id":"16#22#gene2343588#94#diseaseC1843792","pred":"associated_with","subj":"18305110-6#16#22#gene23435","obj":"18305110-6#88#94#diseaseC1843792"},{"id":"16#22#gene2343588#94#diseaseC0338451","pred":"associated_with","subj":"18305110-6#16#22#gene23435","obj":"18305110-6#88#94#diseaseC0338451"},{"id":"16#22#gene2343588#94#diseaseC1843792","pred":"associated_with","subj":"18305110-6#16#22#gene23435","obj":"18305110-6#88#94#diseaseC1843792"},{"id":"78#84#gene2343588#94#diseaseC0338451","pred":"associated_with","subj":"18305110-6#78#84#gene23435","obj":"18305110-6#88#94#diseaseC0338451"},{"id":"78#84#gene2343588#94#diseaseC1843792","pred":"associated_with","subj":"18305110-6#78#84#gene23435","obj":"18305110-6#88#94#diseaseC1843792"},{"id":"78#84#gene2343588#94#diseaseC0338451","pred":"associated_with","subj":"18305110-6#78#84#gene23435","obj":"18305110-6#88#94#diseaseC0338451"},{"id":"78#84#gene2343588#94#diseaseC1843792","pred":"associated_with","subj":"18305110-6#78#84#gene23435","obj":"18305110-6#88#94#diseaseC1843792"},{"id":"130#136#gene2343513#16#diseaseC0002736","pred":"associated_with","subj":"18305110-7#130#136#gene23435","obj":"18305110-7#13#16#diseaseC0002736"}],"attributes":[{"subj":"18305110-6#16#22#gene23435","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"18305110-6#78#84#gene23435","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"18305110-6#88#94#diseaseC0338451","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"18305110-6#88#94#diseaseC1843792","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"18305110-6#88#94#diseaseC0338451","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"18305110-6#88#94#diseaseC1843792","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"18305110-7#130#136#gene23435","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"18305110-7#13#16#diseaseC0002736","pred":"source","obj":"DisGeNET5_gene_disease"}]},{"project":"HP-phenotype","denotations":[{"id":"T1","span":{"begin":293,"end":322},"obj":"Phenotype"},{"id":"T2","span":{"begin":324,"end":327},"obj":"Phenotype"},{"id":"T3","span":{"begin":1208,"end":1211},"obj":"Phenotype"},{"id":"T4","span":{"begin":1226,"end":1229},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"HP:0007354"},{"id":"A2","pred":"hp_id","subj":"T2","obj":"HP:0007354"},{"id":"A3","pred":"hp_id","subj":"T3","obj":"HP:0007354"},{"id":"A4","pred":"hp_id","subj":"T4","obj":"HP:0007354"},{"subj":"T1","pred":"source","obj":"HP-phenotype"},{"subj":"T2","pred":"source","obj":"HP-phenotype"},{"subj":"T3","pred":"source","obj":"HP-phenotype"},{"subj":"T4","pred":"source","obj":"HP-phenotype"}],"namespaces":[{"prefix":"HP","uri":"http://purl.obolibrary.org/obo/HP_"}]},{"project":"mondo_disease","denotations":[{"id":"T1","span":{"begin":39,"end":42},"obj":"Disease"},{"id":"T2","span":{"begin":149,"end":152},"obj":"Disease"},{"id":"T3","span":{"begin":211,"end":244},"obj":"Disease"},{"id":"T4","span":{"begin":293,"end":322},"obj":"Disease"},{"id":"T5","span":{"begin":324,"end":327},"obj":"Disease"},{"id":"T6","span":{"begin":1208,"end":1211},"obj":"Disease"},{"id":"T7","span":{"begin":1226,"end":1229},"obj":"Disease"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MONDO_0010121"},{"id":"A2","pred":"mondo_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MONDO_0010121"},{"id":"A3","pred":"mondo_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MONDO_0017276"},{"id":"A4","pred":"mondo_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/MONDO_0004976"},{"id":"A5","pred":"mondo_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MONDO_0004976"},{"id":"A6","pred":"mondo_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/MONDO_0004976"},{"id":"A7","pred":"mondo_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MONDO_0004976"},{"subj":"T1","pred":"source","obj":"mondo_disease"},{"subj":"T2","pred":"source","obj":"mondo_disease"},{"subj":"T3","pred":"source","obj":"mondo_disease"},{"subj":"T4","pred":"source","obj":"mondo_disease"},{"subj":"T5","pred":"source","obj":"mondo_disease"},{"subj":"T6","pred":"source","obj":"mondo_disease"},{"subj":"T7","pred":"source","obj":"mondo_disease"}]},{"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":27,"end":38},"obj":"Body_part"},{"id":"T2","span":{"begin":764,"end":775},"obj":"Body_part"},{"id":"T3","span":{"begin":801,"end":808},"obj":"Body_part"},{"id":"T5","span":{"begin":843,"end":850},"obj":"Body_part"},{"id":"T7","span":{"begin":932,"end":943},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/GO_0005737"},{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/GO_0005737"},{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/GO_0005634"},{"id":"A4","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0000125"},{"id":"A5","pred":"uberon_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/GO_0005634"},{"id":"A6","pred":"uberon_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/UBERON_0000125"},{"id":"A7","pred":"uberon_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/GO_0005737"},{"subj":"T1","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T2","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T3","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T5","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T7","pred":"source","obj":"Anatomy-UBERON"}]},{"project":"Anatomy-MAT","denotations":[{"id":"T1","span":{"begin":305,"end":312},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"mat_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MAT_0000488"},{"subj":"T1","pred":"source","obj":"Anatomy-MAT"}]},{"project":"CL-cell","denotations":[{"id":"T1","span":{"begin":455,"end":463},"obj":"Cell"},{"id":"T2","span":{"begin":551,"end":565},"obj":"Cell"}],"attributes":[{"id":"A1","pred":"cl_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL:0000540"},{"id":"A2","pred":"cl_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CL:0000010"},{"subj":"T1","pred":"source","obj":"CL-cell"},{"subj":"T2","pred":"source","obj":"CL-cell"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"PMID_GLOBAL","color":"#93ece2","default":true},{"id":"sentences","color":"#ecc893"},{"id":"Glycosmos6-MAT","color":"#ae93ec"},{"id":"DisGeNET","color":"#93ec94"},{"id":"bionlp-st-epi-2011-training","color":"#ec93ab"},{"id":"DisGeNET5_gene_disease","color":"#93c6ec"},{"id":"HP-phenotype","color":"#e0ec93"},{"id":"mondo_disease","color":"#de93ec"},{"id":"Anatomy-UBERON","color":"#93ecc4"},{"id":"Anatomy-MAT","color":"#ecaa93"},{"id":"CL-cell","color":"#9395ec"}]}]}}