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PubMed:17956937 JSONTXT

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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 996-1007 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid
T2 1157-1164 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose
T3 1228-1240 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acids
T4 1684-1696 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acids

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 996-1007 Glycan_Motif denotes sialic acid https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY
T2 1157-1164 Glycan_Motif denotes mannose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G70323CJ
T3 1228-1240 Glycan_Motif denotes sialic acids https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY
T4 1684-1696 Glycan_Motif denotes sialic acids https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 996-1007 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid
T2 1157-1164 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose
T3 1228-1240 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acids
T4 1684-1696 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acids

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-172 Sentence denotes Oligosaccharide profiles of the prostate specific antigen in free and complexed forms from the prostate cancer patient serum and in seminal plasma: a glycopeptide approach.
TextSentencer_T2 173-369 Sentence denotes The oligosaccharide structures of prostate specific antigen (PSA) are expected to be useful in discriminating prostate cancer from benign conditions both accompanied by increased serum PSA levels.
TextSentencer_T3 370-484 Sentence denotes A large proportion of PSA forms a covalent complex with a glycoprotein, alpha(1)-antichymotrypsin, in human blood.
TextSentencer_T4 485-764 Sentence denotes In the present study, the glycan profiles of free and complexed forms of PSA from cancer patient serum and of seminal plasma PSA were compared by analyzing the glycopeptides obtained by lysylendopeptidase digestion of the electrophoretically separated PSA with mass spectrometry.
TextSentencer_T5 765-947 Sentence denotes The profiles of the PSA N-glycans from the free and complexed molecules were quite similar to each other and consisted of fucosylated biantennary oligosaccharides as the major class.
TextSentencer_T6 948-1124 Sentence denotes They were mostly sialylated, and a considerable sialic acid fraction was alpha2,3-linked as determined by Streptococcus pneumoniae neuraminidase digestion of the glycopeptides.
TextSentencer_T7 1125-1453 Sentence denotes In the seminal plasma PSA, high-mannose and hybrid types of oligosaccharides were predominant, and the sialic acids attached to the latter as well as to biantennary oligosaccahrides were exclusively alpha2,6-linked because they were removed by Arthrobacter ureafaciens neuraminidase but resistant to S. pneumoniae neuraminidase.
TextSentencer_T8 1454-1624 Sentence denotes Complex-type oligosaccharides from other sources were found in the seminal plasma sample, indicating that analysis of released glycans carries a risk of being misleading.
TextSentencer_T9 1625-1918 Sentence denotes The results suggest that identification of alpha2,3-linked sialic acids on PSA potentially discriminates malignant from benign conditions, if the analysis is applied to oligosaccharides specifically attached to the N-glycosylation site of PSA in either a free or a complexed form in the serum.
T1 0-172 Sentence denotes Oligosaccharide profiles of the prostate specific antigen in free and complexed forms from the prostate cancer patient serum and in seminal plasma: a glycopeptide approach.
T2 173-369 Sentence denotes The oligosaccharide structures of prostate specific antigen (PSA) are expected to be useful in discriminating prostate cancer from benign conditions both accompanied by increased serum PSA levels.
T3 370-484 Sentence denotes A large proportion of PSA forms a covalent complex with a glycoprotein, alpha(1)-antichymotrypsin, in human blood.
T4 485-764 Sentence denotes In the present study, the glycan profiles of free and complexed forms of PSA from cancer patient serum and of seminal plasma PSA were compared by analyzing the glycopeptides obtained by lysylendopeptidase digestion of the electrophoretically separated PSA with mass spectrometry.
T5 765-947 Sentence denotes The profiles of the PSA N-glycans from the free and complexed molecules were quite similar to each other and consisted of fucosylated biantennary oligosaccharides as the major class.
T6 948-1124 Sentence denotes They were mostly sialylated, and a considerable sialic acid fraction was alpha2,3-linked as determined by Streptococcus pneumoniae neuraminidase digestion of the glycopeptides.
T7 1125-1453 Sentence denotes In the seminal plasma PSA, high-mannose and hybrid types of oligosaccharides were predominant, and the sialic acids attached to the latter as well as to biantennary oligosaccahrides were exclusively alpha2,6-linked because they were removed by Arthrobacter ureafaciens neuraminidase but resistant to S. pneumoniae neuraminidase.
T8 1454-1624 Sentence denotes Complex-type oligosaccharides from other sources were found in the seminal plasma sample, indicating that analysis of released glycans carries a risk of being misleading.
T9 1625-1918 Sentence denotes The results suggest that identification of alpha2,3-linked sialic acids on PSA potentially discriminates malignant from benign conditions, if the analysis is applied to oligosaccharides specifically attached to the N-glycosylation site of PSA in either a free or a complexed form in the serum.
T1 0-172 Sentence denotes Oligosaccharide profiles of the prostate specific antigen in free and complexed forms from the prostate cancer patient serum and in seminal plasma: a glycopeptide approach.
T2 173-369 Sentence denotes The oligosaccharide structures of prostate specific antigen (PSA) are expected to be useful in discriminating prostate cancer from benign conditions both accompanied by increased serum PSA levels.
T3 370-484 Sentence denotes A large proportion of PSA forms a covalent complex with a glycoprotein, alpha(1)-antichymotrypsin, in human blood.
T4 485-764 Sentence denotes In the present study, the glycan profiles of free and complexed forms of PSA from cancer patient serum and of seminal plasma PSA were compared by analyzing the glycopeptides obtained by lysylendopeptidase digestion of the electrophoretically separated PSA with mass spectrometry.
T5 765-947 Sentence denotes The profiles of the PSA N-glycans from the free and complexed molecules were quite similar to each other and consisted of fucosylated biantennary oligosaccharides as the major class.
T6 948-1124 Sentence denotes They were mostly sialylated, and a considerable sialic acid fraction was alpha2,3-linked as determined by Streptococcus pneumoniae neuraminidase digestion of the glycopeptides.
T7 1125-1453 Sentence denotes In the seminal plasma PSA, high-mannose and hybrid types of oligosaccharides were predominant, and the sialic acids attached to the latter as well as to biantennary oligosaccahrides were exclusively alpha2,6-linked because they were removed by Arthrobacter ureafaciens neuraminidase but resistant to S. pneumoniae neuraminidase.
T8 1454-1624 Sentence denotes Complex-type oligosaccharides from other sources were found in the seminal plasma sample, indicating that analysis of released glycans carries a risk of being misleading.
T9 1625-1918 Sentence denotes The results suggest that identification of alpha2,3-linked sialic acids on PSA potentially discriminates malignant from benign conditions, if the analysis is applied to oligosaccharides specifically attached to the N-glycosylation site of PSA in either a free or a complexed form in the serum.

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 32-40 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T2 95-103 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T3 207-215 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T4 283-291 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T5 478-483 http://purl.obolibrary.org/obo/MAT_0000083 denotes blood
T6 478-483 http://purl.obolibrary.org/obo/MAT_0000315 denotes blood

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 283-298 HP_0012125 denotes prostate cancer
T2 292-298 HP_0002664 denotes cancer
T3 567-573 HP_0002664 denotes cancer

GlycoBiology-PACDB

Id Subject Object Predicate Lexical cue
_T1 1054-1067 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC725 denotes Streptococcus
_T2 1054-1078 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC672 denotes Streptococcus pneumoniae
_T3 1054-1078 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC061 denotes Streptococcus pneumoniae
_T4 1054-1078 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC707 denotes Streptococcus pneumoniae
_T5 1054-1078 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC530 denotes Streptococcus pneumoniae
_T6 1054-1078 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC115,LEC118,LEC374,LEC408,LEC423,LEC435,LEC440,LEC557,LEC639 denotes Streptococcus pneumoniae

ICD10

Id Subject Object Predicate Lexical cue
T1 1068-1078 http://purl.bioontology.org/ontology/ICD10/J18.9 denotes pneumoniae
T2 1428-1438 http://purl.bioontology.org/ontology/ICD10/J18.9 denotes pneumoniae

uniprot-human

Id Subject Object Predicate Lexical cue
T1 32-57 http://www.uniprot.org/uniprot/P07288 denotes prostate specific antigen
T2 207-232 http://www.uniprot.org/uniprot/P07288 denotes prostate specific antigen
T3 234-237 http://www.uniprot.org/uniprot/P07288 denotes PSA
T4 358-361 http://www.uniprot.org/uniprot/P07288 denotes PSA
T5 392-395 http://www.uniprot.org/uniprot/P07288 denotes PSA
T6 558-561 http://www.uniprot.org/uniprot/P07288 denotes PSA
T7 610-613 http://www.uniprot.org/uniprot/P07288 denotes PSA
T8 737-740 http://www.uniprot.org/uniprot/P07288 denotes PSA
T9 785-788 http://www.uniprot.org/uniprot/P07288 denotes PSA
T10 1147-1150 http://www.uniprot.org/uniprot/P07288 denotes PSA
T11 1700-1703 http://www.uniprot.org/uniprot/P07288 denotes PSA
T12 1864-1867 http://www.uniprot.org/uniprot/P07288 denotes PSA
T13 32-57 http://www.uniprot.org/uniprot/Q16305 denotes prostate specific antigen
T14 207-232 http://www.uniprot.org/uniprot/Q16305 denotes prostate specific antigen
T15 234-237 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T16 358-361 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T17 392-395 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T18 558-561 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T19 610-613 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T20 737-740 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T21 785-788 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T22 1147-1150 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T23 1700-1703 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T24 1864-1867 http://www.uniprot.org/uniprot/Q9Y617 denotes PSA
T25 234-237 http://www.uniprot.org/uniprot/P55786 denotes PSA
T26 358-361 http://www.uniprot.org/uniprot/P55786 denotes PSA
T27 392-395 http://www.uniprot.org/uniprot/P55786 denotes PSA
T28 558-561 http://www.uniprot.org/uniprot/P55786 denotes PSA
T29 610-613 http://www.uniprot.org/uniprot/P55786 denotes PSA
T30 737-740 http://www.uniprot.org/uniprot/P55786 denotes PSA
T31 785-788 http://www.uniprot.org/uniprot/P55786 denotes PSA
T32 1147-1150 http://www.uniprot.org/uniprot/P55786 denotes PSA
T33 1700-1703 http://www.uniprot.org/uniprot/P55786 denotes PSA
T34 1864-1867 http://www.uniprot.org/uniprot/P55786 denotes PSA
T35 428-449 http://www.uniprot.org/uniprot/P04217 denotes glycoprotein, alpha(1
T36 428-449 http://www.uniprot.org/uniprot/P02743 denotes glycoprotein, alpha(1
T37 442-467 http://www.uniprot.org/uniprot/Q6NSC9 denotes alpha(1)-antichymotrypsin

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 234-237 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T2 358-361 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T3 392-395 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T4 558-561 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T5 610-613 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T6 737-740 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T7 785-788 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T8 1147-1150 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T9 1700-1703 http://www.uniprot.org/uniprot/Q11011 denotes PSA
T10 1864-1867 http://www.uniprot.org/uniprot/Q11011 denotes PSA

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 104-110 http://purl.bioontology.org/ontology/NCBITAXON/6754 denotes cancer
T2 292-298 http://purl.bioontology.org/ontology/NCBITAXON/6754 denotes cancer
T3 567-573 http://purl.bioontology.org/ontology/NCBITAXON/6754 denotes cancer
T4 707-726 http://purl.bioontology.org/ontology/NCBITAXON/8004 denotes electrophoretically
T5 1054-1067 http://purl.bioontology.org/ontology/NCBITAXON/155680 denotes Streptococcus
T6 1054-1067 http://purl.bioontology.org/ontology/NCBITAXON/1301 denotes Streptococcus
T7 1054-1067 http://purl.bioontology.org/ontology/NCBITAXON/1306 denotes Streptococcus
T8 1054-1078 http://purl.bioontology.org/ontology/NCBITAXON/257758 denotes Streptococcus pneumoniae
T9 1054-1078 http://purl.bioontology.org/ontology/NCBITAXON/1313 denotes Streptococcus pneumoniae
T10 1369-1381 http://purl.bioontology.org/ontology/NCBITAXON/1663 denotes Arthrobacter
T11 1369-1393 http://purl.bioontology.org/ontology/NCBITAXON/37931 denotes Arthrobacter ureafaciens

GO-BP

Id Subject Object Predicate Lexical cue
T1 690-699 http://purl.obolibrary.org/obo/GO_0007586 denotes digestion
T2 1093-1102 http://purl.obolibrary.org/obo/GO_0007586 denotes digestion
T3 887-898 http://purl.obolibrary.org/obo/GO_0036065 denotes fucosylated
T4 965-975 http://purl.obolibrary.org/obo/GO_0097503 denotes sialylated
T5 1842-1855 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

GO-CC

Id Subject Object Predicate Lexical cue
T1 413-440 http://purl.obolibrary.org/obo/GO_0090665 denotes complex with a glycoprotein

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 119-124 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
T2 352-357 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
T3 582-587 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
T4 1912-1917 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
T5 478-483 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

GlycoBiology-MAT

Id Subject Object Predicate Lexical cue
T1 32-40 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T2 95-103 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T3 207-215 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T4 283-291 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T5 478-483 http://purl.obolibrary.org/obo/MAT_0000315 denotes blood
T6 478-483 http://purl.obolibrary.org/obo/MAT_0000083 denotes blood
T7 1257-1263 http://purl.obolibrary.org/obo/MAT_0000488 denotes latter

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 789-798 http://rdf.glycoinfo.org/glycan/G00027MO denotes N-glycans
T2 1152-1164 http://rdf.glycoinfo.org/glycan/G00028MO denotes high-mannose

Lectin

Id Subject Object Predicate Lexical cue
Lectin_T1 234-237 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T2 358-361 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T3 392-395 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T4 558-561 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T5 610-613 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T6 737-740 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T7 785-788 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T8 1147-1150 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T9 1700-1703 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA
Lectin_T10 1864-1867 https://acgg.asia/db/lfdb/LfDB0181 denotes PSA

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 119-124 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
PD-UBERON-AE-B_T2 352-357 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
PD-UBERON-AE-B_T3 582-587 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
PD-UBERON-AE-B_T4 1912-1917 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
PD-UBERON-AE-B_T5 478-483 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 95-110 Disease denotes prostate cancer http://purl.obolibrary.org/obo/MONDO_0008315
T2 283-298 Disease denotes prostate cancer http://purl.obolibrary.org/obo/MONDO_0008315
T3 567-573 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T4 1054-1078 Disease denotes Streptococcus pneumoniae http://purl.obolibrary.org/obo/MONDO_0005972
T5 1428-1438 Disease denotes pneumoniae http://purl.obolibrary.org/obo/MONDO_0005249

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 111-118 OrganismTaxon denotes patient 9606
T2 472-477 OrganismTaxon denotes human 9606
T3 574-581 OrganismTaxon denotes patient 9606
T4 1054-1078 OrganismTaxon denotes Streptococcus pneumoniae 1313
T5 1369-1393 OrganismTaxon denotes Arthrobacter ureafaciens 37931

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 32-40 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367
T2 95-103 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367
T3 132-146 Body_part denotes seminal plasma http://purl.obolibrary.org/obo/UBERON_0006530
T4 207-215 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367
T5 283-291 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367
T6 478-483 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T7 595-609 Body_part denotes seminal plasma http://purl.obolibrary.org/obo/UBERON_0006530
T8 1132-1146 Body_part denotes seminal plasma http://purl.obolibrary.org/obo/UBERON_0006530
T9 1521-1535 Body_part denotes seminal plasma http://purl.obolibrary.org/obo/UBERON_0006530

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 32-40 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078
T2 95-103 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078
T3 207-215 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078
T4 283-291 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078
T5 478-483 Body_part denotes blood http://purl.obolibrary.org/obo/MAT_0000083|http://purl.obolibrary.org/obo/MAT_0000315

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 95-110 Phenotype denotes prostate cancer HP:0012125
T2 283-298 Phenotype denotes prostate cancer HP:0012125
T3 567-573 Phenotype denotes cancer HP:0002664
T4 1068-1078 Phenotype denotes pneumoniae HP:0002090
T5 1428-1438 Phenotype denotes pneumoniae HP:0002090