PubMed:17345627 / 529-765
Annnotations
LitCoin-sentences
{"project":"LitCoin-sentences","denotations":[{"id":"T4","span":{"begin":0,"end":236},"obj":"Sentence"}],"text":"Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations."}
LitCoin-entities
{"project":"LitCoin-entities","denotations":[{"id":"4064","span":{"begin":34,"end":62},"obj":"GeneOrGeneProduct"},{"id":"4065","span":{"begin":64,"end":68},"obj":"GeneOrGeneProduct"},{"id":"4066","span":{"begin":106,"end":110},"obj":"GeneOrGeneProduct"},{"id":"4067","span":{"begin":121,"end":127},"obj":"OrganismTaxon"},{"id":"4068","span":{"begin":128,"end":146},"obj":"DiseaseOrPhenotypicFeature"},{"id":"4069","span":{"begin":207,"end":235},"obj":"DiseaseOrPhenotypicFeature"}],"attributes":[{"id":"A22","pred":"db_id","subj":"4064","obj":"NCBIGene:653"},{"id":"A23","pred":"db_id","subj":"4065","obj":"NCBIGene:653"},{"id":"A24","pred":"db_id","subj":"4066","obj":"NCBIGene:653"},{"id":"A25","pred":"db_id","subj":"4067","obj":"NCBITaxon:10090"},{"id":"A26","pred":"db_id","subj":"4068","obj":"MESH:D004427"},{"id":"A27","pred":"db_id","subj":"4069","obj":"MESH:D001848"}],"namespaces":[{"prefix":"_base","uri":"https://w3id.org/biolink/vocab/"},{"prefix":"MESH","uri":"http://id.nlm.nih.gov/mesh/"},{"prefix":"NCBITaxon","uri":"https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id="},{"prefix":"NCBIGene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"OMIM","uri":"https://www.omim.org/entry/"},{"prefix":"DBSNP","uri":"https://www.ncbi.nlm.nih.gov/snp/"}],"text":"Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations."}
LitCoin-GeneOrGeneProduct-v2
{"project":"LitCoin-GeneOrGeneProduct-v2","denotations":[{"id":"T9","span":{"begin":34,"end":62},"obj":"GeneOrGeneProduct"},{"id":"T10","span":{"begin":64,"end":68},"obj":"GeneOrGeneProduct"},{"id":"T11","span":{"begin":106,"end":110},"obj":"GeneOrGeneProduct"},{"id":"T12","span":{"begin":138,"end":146},"obj":"GeneOrGeneProduct"},{"id":"T13","span":{"begin":165,"end":170},"obj":"GeneOrGeneProduct"},{"id":"T14","span":{"begin":171,"end":180},"obj":"GeneOrGeneProduct"},{"id":"T15","span":{"begin":192,"end":197},"obj":"GeneOrGeneProduct"}],"text":"Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations."}
LitCoin-GeneOrGeneProduct-v0
{"project":"LitCoin-GeneOrGeneProduct-v0","denotations":[{"id":"T18","span":{"begin":17,"end":26},"obj":"GeneOrGeneProduct"},{"id":"T19","span":{"begin":34,"end":62},"obj":"GeneOrGeneProduct"},{"id":"T20","span":{"begin":64,"end":68},"obj":"GeneOrGeneProduct"},{"id":"T21","span":{"begin":106,"end":110},"obj":"GeneOrGeneProduct"},{"id":"T22","span":{"begin":138,"end":146},"obj":"GeneOrGeneProduct"},{"id":"T23","span":{"begin":165,"end":170},"obj":"GeneOrGeneProduct"},{"id":"T24","span":{"begin":171,"end":180},"obj":"GeneOrGeneProduct"},{"id":"T25","span":{"begin":181,"end":185},"obj":"GeneOrGeneProduct"},{"id":"T26","span":{"begin":192,"end":197},"obj":"GeneOrGeneProduct"},{"id":"T27","span":{"begin":198,"end":203},"obj":"GeneOrGeneProduct"},{"id":"T28","span":{"begin":222,"end":235},"obj":"GeneOrGeneProduct"}],"text":"Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations."}
LitCoin-Disease-MeSH
{"project":"LitCoin-Disease-MeSH","denotations":[{"id":"T7","span":{"begin":138,"end":146},"obj":"DiseaseOrPhenotypicFeature"}],"attributes":[{"id":"A7","pred":"originalLabel","subj":"T7","obj":"D013577"}],"text":"Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations."}
LitCoin-GeneOrGeneProduct-v3
{"project":"LitCoin-GeneOrGeneProduct-v3","denotations":[{"id":"T7","span":{"begin":34,"end":62},"obj":"GeneOrGeneProduct"},{"id":"T8","span":{"begin":64,"end":68},"obj":"GeneOrGeneProduct"},{"id":"T9","span":{"begin":106,"end":110},"obj":"GeneOrGeneProduct"}],"text":"Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations."}
LitCoin_Mondo_095
{"project":"LitCoin_Mondo_095","denotations":[{"id":"T8","span":{"begin":138,"end":146},"obj":"DiseaseOrPhenotypicFeature"}],"attributes":[{"id":"A8","pred":"mondo_id","subj":"T8","obj":"0002254"}],"text":"Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations."}
LitCoin-MeSH-Disease-2
{"project":"LitCoin-MeSH-Disease-2","denotations":[{"id":"T10","span":{"begin":138,"end":146},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T11","span":{"begin":207,"end":235},"obj":"DiseaseOrPhenotypicFeature"}],"attributes":[{"id":"A10","pred":"ID:","subj":"T10","obj":"D013577"},{"id":"A11","pred":"ID:","subj":"T11","obj":"DISEASE"}],"text":"Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations."}
LitCoin-MONDO_bioort2019
{"project":"LitCoin-MONDO_bioort2019","denotations":[{"id":"T8","span":{"begin":128,"end":146},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T9","span":{"begin":207,"end":235},"obj":"DiseaseOrPhenotypicFeature"}],"attributes":[{"id":"A8","pred":"#label","subj":"T8","obj":"EisukeAdded"},{"id":"A9","pred":"#label","subj":"T9","obj":"DISEASE"}],"text":"Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations."}
LitCoin-NCBITaxon-2
{"project":"LitCoin-NCBITaxon-2","denotations":[{"id":"T2","span":{"begin":121,"end":127},"obj":"OrganismTaxon"}],"text":"Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations."}
LitCoin-training-merged
{"project":"LitCoin-training-merged","denotations":[{"id":"T9","span":{"begin":106,"end":110},"obj":"GeneOrGeneProduct"},{"id":"T8","span":{"begin":64,"end":68},"obj":"GeneOrGeneProduct"},{"id":"T7","span":{"begin":34,"end":62},"obj":"GeneOrGeneProduct"},{"id":"T28987","span":{"begin":207,"end":235},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T79687","span":{"begin":128,"end":146},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T23195","span":{"begin":121,"end":127},"obj":"OrganismTaxon"}],"attributes":[{"id":"A9","pred":"#label","subj":"T28987","obj":"DISEASE"},{"id":"A8","pred":"#label","subj":"T79687","obj":"EisukeAdded"}],"text":"Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations."}
sentences
{"project":"sentences","denotations":[{"id":"TextSentencer_T4","span":{"begin":0,"end":236},"obj":"Sentence"},{"id":"T4","span":{"begin":0,"end":236},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations."}
DisGeNET
{"project":"DisGeNET","denotations":[{"id":"T0","span":{"begin":34,"end":62},"obj":"gene:653"},{"id":"T1","span":{"begin":222,"end":235},"obj":"disease:C0000768"},{"id":"T2","span":{"begin":64,"end":68},"obj":"gene:653"},{"id":"T3","span":{"begin":222,"end":235},"obj":"disease:C0000768"},{"id":"T4","span":{"begin":106,"end":110},"obj":"gene:653"},{"id":"T5","span":{"begin":222,"end":235},"obj":"disease:C0000768"}],"relations":[{"id":"R1","pred":"associated_with","subj":"T0","obj":"T1"},{"id":"R2","pred":"associated_with","subj":"T2","obj":"T3"},{"id":"R3","pred":"associated_with","subj":"T4","obj":"T5"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"text":"Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations."}
PubmedHPO
{"project":"PubmedHPO","denotations":[{"id":"T4","span":{"begin":128,"end":137},"obj":"HP_0400005"},{"id":"T5","span":{"begin":171,"end":185},"obj":"HP_0000377"},{"id":"T6","span":{"begin":171,"end":185},"obj":"HP_0000598"},{"id":"T7","span":{"begin":171,"end":185},"obj":"HP_0000356"},{"id":"T8","span":{"begin":213,"end":235},"obj":"HP_0000924"}],"text":"Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations."}
PubCasesHPO
{"project":"PubCasesHPO","denotations":[{"id":"AB1","span":{"begin":128,"end":137},"obj":"HP:0400005"}],"text":"Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations."}
performance-test
{"project":"performance-test","denotations":[{"id":"PD-UBERON-AE-B_T3","span":{"begin":134,"end":137},"obj":"http://purl.obolibrary.org/obo/UBERON_0001690"},{"id":"PD-UBERON-AE-B_T4","span":{"begin":181,"end":185},"obj":"http://purl.obolibrary.org/obo/UBERON_0001690"}],"text":"Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations."}