PubMed:17345627 / 529-765
Annnotations
LitCoin-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 0-236 | Sentence | denotes | Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations. |
LitCoin-entities
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| 4064 | 34-62 | GeneOrGeneProduct | denotes | bone morphogenetic protein 5 | NCBIGene:653 |
| 4065 | 64-68 | GeneOrGeneProduct | denotes | bmp5 | NCBIGene:653 |
| 4066 | 106-110 | GeneOrGeneProduct | denotes | BMP5 | NCBIGene:653 |
| 4067 | 121-127 | OrganismTaxon | denotes | murine | NCBITaxon:10090 |
| 4068 | 128-146 | DiseaseOrPhenotypicFeature | denotes | short ear syndrome | MESH:D004427 |
| 4069 | 207-235 | DiseaseOrPhenotypicFeature | denotes | axial skeletal malformations | MESH:D001848 |
LitCoin-GeneOrGeneProduct-v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T9 | 34-62 | GeneOrGeneProduct | denotes | bone morphogenetic protein 5 |
| T10 | 64-68 | GeneOrGeneProduct | denotes | bmp5 |
| T11 | 106-110 | GeneOrGeneProduct | denotes | BMP5 |
| T12 | 138-146 | GeneOrGeneProduct | denotes | syndrome |
| T13 | 165-170 | GeneOrGeneProduct | denotes | small |
| T14 | 171-180 | GeneOrGeneProduct | denotes | malformed |
| T15 | 192-197 | GeneOrGeneProduct | denotes | broad |
LitCoin-GeneOrGeneProduct-v0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T18 | 17-26 | GeneOrGeneProduct | denotes | mutations |
| T19 | 34-62 | GeneOrGeneProduct | denotes | bone morphogenetic protein 5 |
| T20 | 64-68 | GeneOrGeneProduct | denotes | bmp5 |
| T21 | 106-110 | GeneOrGeneProduct | denotes | BMP5 |
| T22 | 138-146 | GeneOrGeneProduct | denotes | syndrome |
| T23 | 165-170 | GeneOrGeneProduct | denotes | small |
| T24 | 171-180 | GeneOrGeneProduct | denotes | malformed |
| T25 | 181-185 | GeneOrGeneProduct | denotes | ears |
| T26 | 192-197 | GeneOrGeneProduct | denotes | broad |
| T27 | 198-203 | GeneOrGeneProduct | denotes | range |
| T28 | 222-235 | GeneOrGeneProduct | denotes | malformations |
LitCoin-Disease-MeSH
| Id | Subject | Object | Predicate | Lexical cue | originalLabel |
|---|---|---|---|---|---|
| T7 | 138-146 | DiseaseOrPhenotypicFeature | denotes | syndrome | D013577 |
LitCoin-GeneOrGeneProduct-v3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7 | 34-62 | GeneOrGeneProduct | denotes | bone morphogenetic protein 5 |
| T8 | 64-68 | GeneOrGeneProduct | denotes | bmp5 |
| T9 | 106-110 | GeneOrGeneProduct | denotes | BMP5 |
LitCoin_Mondo_095
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T8 | 138-146 | DiseaseOrPhenotypicFeature | denotes | syndrome | 0002254 |
LitCoin-MeSH-Disease-2
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T10 | 138-146 | DiseaseOrPhenotypicFeature | denotes | syndrome | D013577 |
| T11 | 207-235 | DiseaseOrPhenotypicFeature | denotes | axial skeletal malformations | DISEASE |
LitCoin-MONDO_bioort2019
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T8 | 128-146 | DiseaseOrPhenotypicFeature | denotes | short ear syndrome | EisukeAdded |
| T9 | 207-235 | DiseaseOrPhenotypicFeature | denotes | axial skeletal malformations | DISEASE |
LitCoin-NCBITaxon-2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2 | 121-127 | OrganismTaxon | denotes | murine |
LitCoin-training-merged
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T9 | 106-110 | GeneOrGeneProduct | denotes | BMP5 | |
| T8 | 64-68 | GeneOrGeneProduct | denotes | bmp5 | |
| T7 | 34-62 | GeneOrGeneProduct | denotes | bone morphogenetic protein 5 | |
| T28987 | 207-235 | DiseaseOrPhenotypicFeature | denotes | axial skeletal malformations | DISEASE |
| T79687 | 128-146 | DiseaseOrPhenotypicFeature | denotes | short ear syndrome | EisukeAdded |
| T23195 | 121-127 | OrganismTaxon | denotes | murine |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T4 | 0-236 | Sentence | denotes | Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations. |
| T4 | 0-236 | Sentence | denotes | Loss of function mutations in the bone morphogenetic protein 5 (bmp5) gene leading to under-expression of BMP5 cause the murine short ear syndrome, characterized by small malformed ears and a broad range of axial skeletal malformations. |
DisGeNET
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T0 | 34-62 | gene:653 | denotes | bone morphogenetic protein 5 |
| T1 | 222-235 | disease:C0000768 | denotes | malformations |
| T2 | 64-68 | gene:653 | denotes | bmp5 |
| T3 | 222-235 | disease:C0000768 | denotes | malformations |
| T4 | 106-110 | gene:653 | denotes | BMP5 |
| T5 | 222-235 | disease:C0000768 | denotes | malformations |
| R1 | T0 | T1 | associated_with | bone morphogenetic protein 5,malformations |
| R2 | T2 | T3 | associated_with | bmp5,malformations |
| R3 | T4 | T5 | associated_with | BMP5,malformations |
PubmedHPO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 128-137 | HP_0400005 | denotes | short ear |
| T5 | 171-185 | HP_0000377 | denotes | malformed ears |
| T6 | 171-185 | HP_0000598 | denotes | malformed ears |
| T7 | 171-185 | HP_0000356 | denotes | malformed ears |
| T8 | 213-235 | HP_0000924 | denotes | skeletal malformations |
PubCasesHPO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| AB1 | 128-137 | HP:0400005 | denotes | short ear |
performance-test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-UBERON-AE-B_T3 | 134-137 | http://purl.obolibrary.org/obo/UBERON_0001690 | denotes | ear |
| PD-UBERON-AE-B_T4 | 181-185 | http://purl.obolibrary.org/obo/UBERON_0001690 | denotes | ears |