PubMed:16252083 / 568-953
Annnotations
PubTator4TogoVar
| Id | Subject | Object | Predicate | Lexical cue | proteinmutation |
|---|---|---|---|---|---|
| 16252083_0 | 154-191 | ProteinMutation | denotes | Asn --> Ser substitution at codon 127 | rs17217772 |
| 16252083_1 | 278-309 | ProteinMutation | denotes | Gly --> Asp change at codon 322 | rs4987188 |
LitCoin-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5 | 0-385 | Sentence | denotes | We performed a case-control study to test the association between two polymorphisms in the hMSH2 gene: an A --> G transition at 127 position producing an Asn --> Ser substitution at codon 127 (the Asn127Ser polymorphism) and a G --> A transition at 1032 position resulting in a Gly --> Asp change at codon 322 (the Gly322Asp polymorphism) and breast cancer risk and cancer progression. |
LitCoin-entities-OrganismTaxon-PD
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 182-187 | OrganismTaxon | denotes | codon | NCBItxid:79338 |
| T2 | 300-305 | OrganismTaxon | denotes | codon | NCBItxid:79338 |
LitCoin-entities
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| 2445 | 91-96 | GeneOrGeneProduct | denotes | hMSH2 | NCBIGene:4436 |
| 2446 | 106-140 | SequenceVariant | denotes | A --> G transition at 127 position | DBSNP:rs17217772 |
| 2447 | 154-191 | SequenceVariant | denotes | Asn --> Ser substitution at codon 127 | DBSNP:rs17217772 |
| 2448 | 197-206 | SequenceVariant | denotes | Asn127Ser | DBSNP:rs17217772 |
| 2449 | 227-262 | SequenceVariant | denotes | G --> A transition at 1032 position | DBSNP:rs4987188 |
| 2450 | 278-309 | SequenceVariant | denotes | Gly --> Asp change at codon 322 | DBSNP:rs4987188 |
| 2451 | 315-324 | SequenceVariant | denotes | Gly322Asp | DBSNP:rs4987188 |
| 2452 | 343-356 | DiseaseOrPhenotypicFeature | denotes | breast cancer | MESH:D001943 |
| 2453 | 366-372 | DiseaseOrPhenotypicFeature | denotes | cancer | MESH:D009369 |
LitCoin_Mondo
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T8 | 343-356 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254 |
| T9 | 350-356 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
| T10 | 366-372 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
LitCoin-SeqVar
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 197-206 | SequenceVariant | denotes | Asn127Ser |
| T2 | 315-324 | SequenceVariant | denotes | Gly322Asp |
LitCoin-GeneOrGeneProduct-v0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T12 | 15-19 | GeneOrGeneProduct | denotes | case |
| T13 | 37-41 | GeneOrGeneProduct | denotes | test |
| T14 | 91-96 | GeneOrGeneProduct | denotes | hMSH2 |
| T15 | 103-113 | GeneOrGeneProduct | denotes | an A --> G |
| T16 | 154-157 | GeneOrGeneProduct | denotes | Asn |
| T17 | 162-165 | GeneOrGeneProduct | denotes | Ser |
| T18 | 273-277 | GeneOrGeneProduct | denotes | in a |
LitCoin-GeneOrGeneProduct-v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8 | 91-96 | GeneOrGeneProduct | denotes | hMSH2 |
LitCoin-Disease-MeSH
| Id | Subject | Object | Predicate | Lexical cue | originalLabel |
|---|---|---|---|---|---|
| T7 | 343-356 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T8 | 366-372 | DiseaseOrPhenotypicFeature | denotes | cancer | D009369 |
LitCoin-GeneOrGeneProduct-v3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 91-96 | GeneOrGeneProduct | denotes | hMSH2 |
LitCoin_Mondo_095
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T7 | 343-356 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254|0004989 |
LitCoin-MeSH-Disease-2
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T7 | 343-356 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T8 | 366-372 | DiseaseOrPhenotypicFeature | denotes | cancer | D009369 |
LitCoin-MONDO_bioort2019
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T7 | 343-356 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T8 | 366-372 | DiseaseOrPhenotypicFeature | denotes | cancer | D009369 |
LitCoin-Chemical-MeSH-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T1 | 154-157 | ChemicalEntity | denotes | Asn | http://purl.obolibrary.org/obo/CHEBI_50347|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_17196 |
| T4 | 162-165 | ChemicalEntity | denotes | Ser | http://purl.obolibrary.org/obo/CHEBI_29999|http://purl.obolibrary.org/obo/CHEBI_17115 |
| T6 | 278-281 | ChemicalEntity | denotes | Gly | http://purl.obolibrary.org/obo/CHEBI_15428 |
| T7 | 286-289 | ChemicalEntity | denotes | Asp | http://purl.obolibrary.org/obo/CHEBI_29958|http://purl.obolibrary.org/obo/CHEBI_22660|http://purl.obolibrary.org/obo/CHEBI_17053 |
LitCoin-training-merged
| Id | Subject | Object | Predicate | Lexical cue | #label | ID: |
|---|---|---|---|---|---|---|
| T7 | 286-289 | ChemicalEntity | denotes | Asp | http://purl.obolibrary.org/obo/CHEBI_17053|http://purl.obolibrary.org/obo/CHEBI_22660|http://purl.obolibrary.org/obo/CHEBI_29958 | |
| T6 | 278-281 | ChemicalEntity | denotes | Gly | http://purl.obolibrary.org/obo/CHEBI_15428 | |
| T4 | 162-165 | ChemicalEntity | denotes | Ser | http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999 | |
| T1 | 154-157 | ChemicalEntity | denotes | Asn | http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347 | |
| T37804 | 91-96 | GeneOrGeneProduct | denotes | hMSH2 | ||
| T8 | 366-372 | DiseaseOrPhenotypicFeature | denotes | cancer | D009369 | |
| T26934 | 343-356 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 | |
| T5825 | 315-324 | SequenceVariant | denotes | Gly322Asp | ||
| T64918 | 197-206 | SequenceVariant | denotes | Asn127Ser |
DisGeNET5_variant_disease
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 16252083-4#315#324#geners4987188 | 315-324 | geners4987188 | denotes | Gly322Asp |
| 16252083-4#197#206#geners17217772 | 197-206 | geners17217772 | denotes | Asn127Ser |
| 16252083-4#366#384#diseaseC0178874 | 366-384 | diseaseC0178874 | denotes | cancer progression |
| 16252083-4#343#356#diseaseC0006142 | 343-356 | diseaseC0006142 | denotes | breast cancer |
| 16252083-4#343#356#diseaseC0678222 | 343-356 | diseaseC0678222 | denotes | breast cancer |
| 16252083-4#366#384#diseaseC0178874 | 366-384 | diseaseC0178874 | denotes | cancer progression |
| 315#324#geners4987188366#384#diseaseC0178874 | 16252083-4#315#324#geners4987188 | 16252083-4#366#384#diseaseC0178874 | associated_with | Gly322Asp,cancer progression |
| 315#324#geners4987188343#356#diseaseC0006142 | 16252083-4#315#324#geners4987188 | 16252083-4#343#356#diseaseC0006142 | associated_with | Gly322Asp,breast cancer |
| 315#324#geners4987188343#356#diseaseC0678222 | 16252083-4#315#324#geners4987188 | 16252083-4#343#356#diseaseC0678222 | associated_with | Gly322Asp,breast cancer |
| 315#324#geners4987188366#384#diseaseC0178874 | 16252083-4#315#324#geners4987188 | 16252083-4#366#384#diseaseC0178874 | associated_with | Gly322Asp,cancer progression |
| 197#206#geners17217772366#384#diseaseC0178874 | 16252083-4#197#206#geners17217772 | 16252083-4#366#384#diseaseC0178874 | associated_with | Asn127Ser,cancer progression |
| 197#206#geners17217772343#356#diseaseC0006142 | 16252083-4#197#206#geners17217772 | 16252083-4#343#356#diseaseC0006142 | associated_with | Asn127Ser,breast cancer |
| 197#206#geners17217772343#356#diseaseC0678222 | 16252083-4#197#206#geners17217772 | 16252083-4#343#356#diseaseC0678222 | associated_with | Asn127Ser,breast cancer |
| 197#206#geners17217772366#384#diseaseC0178874 | 16252083-4#197#206#geners17217772 | 16252083-4#366#384#diseaseC0178874 | associated_with | Asn127Ser,cancer progression |
DisGeNET5_gene_disease
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 16252083-4#91#96#gene4436 | 91-96 | gene4436 | denotes | hMSH2 |
| 16252083-4#366#384#diseaseC0178874 | 366-384 | diseaseC0178874 | denotes | cancer progression |
| 91#96#gene4436366#384#diseaseC0178874 | 16252083-4#91#96#gene4436 | 16252083-4#366#384#diseaseC0178874 | associated_with | hMSH2,cancer progression |
tmVarCorpus
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 106-140 | DNAMutation:|SUB|A|CODON127|G | denotes | A --> G transition at 127 position |
| T2 | 154-191 | ProteinMutation:p|SUB|N|127|S | denotes | Asn --> Ser substitution at codon 127 |
| T3 | 197-206 | ProteinMutation:p|SUB|N|127|S | denotes | Asn127Ser |
| T4 | 227-262 | DNAMutation:g|SUB|G|1032|A | denotes | G --> A transition at 1032 position |
| T5 | 278-309 | ProteinMutation:p|SUB|G|322|D | denotes | Gly --> Asp change at codon 322 |
| T6 | 315-324 | ProteinMutation:p|SUB|G|322|D | denotes | Gly322Asp |