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PubMed:14711836 JSONTXT

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CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 129-146 Cell denotes endothelial cells http://purl.obolibrary.org/obo/CL:0000115
T2 321-335 Cell denotes dendritic cell http://purl.obolibrary.org/obo/CL:0000451|http://purl.obolibrary.org/obo/CL:0001056
T4 634-650 Cell denotes endothelial cell http://purl.obolibrary.org/obo/CL:0000115
T5 982-1000 Cell denotes hematopoietic cell http://purl.obolibrary.org/obo/CL:0000988
T6 1014-1046 Cell denotes monocyte-derived dendritic cells http://purl.obolibrary.org/obo/CL:0011031
T7 1014-1022 Cell denotes monocyte http://purl.obolibrary.org/obo/CL:0000576|http://purl.obolibrary.org/obo/CL:0001054
T9 1048-1051 Cell denotes DCs http://purl.obolibrary.org/obo/CL:0000451
T10 1113-1130 Cell denotes endothelial cells http://purl.obolibrary.org/obo/CL:0000115

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 1210-1217 Glycan_Motif denotes mannose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G70323CJ
T2 1231-1237 Glycan_Motif denotes fucose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G82576YO
T3 1278-1287 Glycan_Motif denotes galactose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G68158BT|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G65889KE

sentences

Id Subject Object Predicate Lexical cue
T1 0-171 Sentence denotes Characterization of a novel C-type lectin-like gene, LSECtin: demonstration of carbohydrate binding and expression in sinusoidal endothelial cells of liver and lymph node.
T2 172-450 Sentence denotes A new C-type lectin-like gene encodes 293 amino acids and maps to chromosome 19p13.3 adjacent to the previously described C-type lectin genes, CD23, dendritic cell-specific intercellular adhesion molecule-3-grabbing nonintegrin (DC-SIGN), and DC-SIGN-related protein (DC-SIGNR).
T3 451-553 Sentence denotes The four genes form a tight cluster in an insert size of 105 kb and have analogous genomic structures.
T4 554-860 Sentence denotes The new C-type lectin-like molecule, designated liver and lymph node sinusoidal endothelial cell C-type lectin (LSECtin), is a type II integral membrane protein of approximately 40 kDa in size with a single C-type lectin-like domain at the COOH terminus, closest in homology to DC-SIGNR, DC-SIGN, and CD23.
T5 861-1053 Sentence denotes LSECtin mRNA was only expressed in liver and lymph node among 15 human tissues tested, intriguingly neither expressed on hematopoietic cell lines nor on monocyte-derived dendritic cells (DCs).
T6 1054-1192 Sentence denotes Moreover, LSECtin is expressed predominantly by sinusoidal endothelial cells of human liver and lymph node and co-expressed with DC-SIGNR.
T7 1193-1288 Sentence denotes LSECtin binds to mannose, GlcNAc, and fucose in a Ca(2+)-dependent manner but not to galactose.
T8 1289-1452 Sentence denotes Our results indicate that LSECtin is a novel member of a family of proteins comprising CD23, DC-SIGN, and DC-SIGNR and might function in vivo as a lectin receptor.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 1210-1217 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose
T2 1231-1237 https://glytoucan.org/Structures/Glycans/G82576YO denotes fucose
T3 1278-1287 https://glytoucan.org/Structures/Glycans/G65889KE denotes galactose
T4 1278-1287 https://glytoucan.org/Structures/Glycans/G68158BT denotes galactose

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 150-155 http://purl.obolibrary.org/obo/MAT_0000097 denotes liver
T2 160-170 http://purl.obolibrary.org/obo/MAT_0000197 denotes lymph node
T3 160-170 http://purl.obolibrary.org/obo/MAT_0000442 denotes lymph node
T4 160-165 http://purl.obolibrary.org/obo/MAT_0000055 denotes lymph
T5 602-607 http://purl.obolibrary.org/obo/MAT_0000097 denotes liver
T6 612-622 http://purl.obolibrary.org/obo/MAT_0000197 denotes lymph node
T7 612-622 http://purl.obolibrary.org/obo/MAT_0000442 denotes lymph node
T8 612-617 http://purl.obolibrary.org/obo/MAT_0000055 denotes lymph
T9 896-901 http://purl.obolibrary.org/obo/MAT_0000097 denotes liver
T10 906-916 http://purl.obolibrary.org/obo/MAT_0000197 denotes lymph node
T11 906-916 http://purl.obolibrary.org/obo/MAT_0000442 denotes lymph node
T12 906-911 http://purl.obolibrary.org/obo/MAT_0000055 denotes lymph
T13 1140-1145 http://purl.obolibrary.org/obo/MAT_0000097 denotes liver
T14 1150-1160 http://purl.obolibrary.org/obo/MAT_0000197 denotes lymph node
T15 1150-1160 http://purl.obolibrary.org/obo/MAT_0000442 denotes lymph node
T16 1150-1155 http://purl.obolibrary.org/obo/MAT_0000055 denotes lymph

NGLY1-deficiency

Id Subject Object Predicate Lexical cue
PD-NGLY1-deficiency-B_T1 1219-1225 chem:24139 denotes GlcNAc

Lectin-Jamboree-small

Id Subject Object Predicate Lexical cue glycosmos_id
T1 401-408 Lectin denotes DC-SIGN GL_001382
T2 415-422 Lectin denotes DC-SIGN GL_001382
T3 842-849 Lectin denotes DC-SIGN GL_001382
T4 1382-1389 Lectin denotes DC-SIGN GL_001382

Lectin-Jamboree-Sentence

Id Subject Object Predicate Lexical cue
T1 0-171 Sentence denotes Characterization of a novel C-type lectin-like gene, LSECtin: demonstration of carbohydrate binding and expression in sinusoidal endothelial cells of liver and lymph node.
T2 172-450 Sentence denotes A new C-type lectin-like gene encodes 293 amino acids and maps to chromosome 19p13.3 adjacent to the previously described C-type lectin genes, CD23, dendritic cell-specific intercellular adhesion molecule-3-grabbing nonintegrin (DC-SIGN), and DC-SIGN-related protein (DC-SIGNR).
T3 451-553 Sentence denotes The four genes form a tight cluster in an insert size of 105 kb and have analogous genomic structures.
T4 554-860 Sentence denotes The new C-type lectin-like molecule, designated liver and lymph node sinusoidal endothelial cell C-type lectin (LSECtin), is a type II integral membrane protein of approximately 40 kDa in size with a single C-type lectin-like domain at the COOH terminus, closest in homology to DC-SIGNR, DC-SIGN, and CD23.
T5 861-1053 Sentence denotes LSECtin mRNA was only expressed in liver and lymph node among 15 human tissues tested, intriguingly neither expressed on hematopoietic cell lines nor on monocyte-derived dendritic cells (DCs).
T6 1054-1192 Sentence denotes Moreover, LSECtin is expressed predominantly by sinusoidal endothelial cells of human liver and lymph node and co-expressed with DC-SIGNR.
T7 1193-1288 Sentence denotes LSECtin binds to mannose, GlcNAc, and fucose in a Ca(2+)-dependent manner but not to galactose.
T8 1289-1452 Sentence denotes Our results indicate that LSECtin is a novel member of a family of proteins comprising CD23, DC-SIGN, and DC-SIGNR and might function in vivo as a lectin receptor.

Lectin_function

Id Subject Object Predicate Lexical cue
T1 28-41 GL_000114 denotes C-type lectin
T2 28-41 GL_000115 denotes C-type lectin
T3 35-41 GX_000027 denotes lectin
T4 35-41 GX_000045 denotes lectin
T5 178-191 GL_000114 denotes C-type lectin
T6 178-191 GL_000115 denotes C-type lectin
T7 185-191 GX_000027 denotes lectin
T8 185-191 GX_000045 denotes lectin
T9 294-307 GL_000114 denotes C-type lectin
T10 294-307 GL_000115 denotes C-type lectin
T11 301-307 GX_000027 denotes lectin
T12 301-307 GX_000045 denotes lectin
T13 401-408 GX_000001 denotes DC-SIGN
T14 401-408 GX_000012 denotes DC-SIGN
T15 401-408 GX_000016 denotes DC-SIGN
T16 401-408 GL_001382 denotes DC-SIGN
T17 415-422 GX_000001 denotes DC-SIGN
T18 415-422 GX_000012 denotes DC-SIGN
T19 415-422 GX_000016 denotes DC-SIGN
T20 415-422 GL_001382 denotes DC-SIGN
T21 562-575 GL_000114 denotes C-type lectin
T22 562-575 GL_000115 denotes C-type lectin
T23 569-575 GX_000027 denotes lectin
T24 569-575 GX_000045 denotes lectin
T25 651-664 GL_000114 denotes C-type lectin
T26 651-664 GL_000115 denotes C-type lectin
T27 658-664 GX_000027 denotes lectin
T28 658-664 GX_000045 denotes lectin
T29 761-774 GL_000114 denotes C-type lectin
T30 761-774 GL_000115 denotes C-type lectin
T31 768-774 GX_000027 denotes lectin
T32 768-774 GX_000045 denotes lectin
T33 842-849 GX_000001 denotes DC-SIGN
T34 842-849 GX_000012 denotes DC-SIGN
T35 842-849 GX_000016 denotes DC-SIGN
T36 842-849 GL_001382 denotes DC-SIGN
T37 1382-1389 GX_000001 denotes DC-SIGN
T38 1382-1389 GX_000012 denotes DC-SIGN
T39 1382-1389 GX_000016 denotes DC-SIGN
T40 1382-1389 GL_001382 denotes DC-SIGN
T41 1436-1442 GX_000027 denotes lectin
T42 1436-1442 GX_000045 denotes lectin

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 926-931 OrganismTaxon denotes human 9606
T2 1134-1139 OrganismTaxon denotes human 9606

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 129-146 Body_part denotes endothelial cells http://purl.obolibrary.org/obo/CL_0000115
T2 150-155 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T3 160-170 Body_part denotes lymph node http://purl.obolibrary.org/obo/UBERON_0000029
T4 238-248 Body_part denotes chromosome http://purl.obolibrary.org/obo/GO_0005694
T5 321-335 Body_part denotes dendritic cell http://purl.obolibrary.org/obo/CL_0000451
T6 602-607 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T7 612-622 Body_part denotes lymph node http://purl.obolibrary.org/obo/UBERON_0000029
T8 634-650 Body_part denotes endothelial cell http://purl.obolibrary.org/obo/CL_0000115
T9 698-706 Body_part denotes membrane http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158
T12 896-901 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T13 906-916 Body_part denotes lymph node http://purl.obolibrary.org/obo/UBERON_0000029
T14 982-1000 Body_part denotes hematopoietic cell http://purl.obolibrary.org/obo/CL_0000988
T15 1014-1022 Body_part denotes monocyte http://purl.obolibrary.org/obo/CL_0000576|http://purl.obolibrary.org/obo/CL_0001054
T17 1031-1046 Body_part denotes dendritic cells http://purl.obolibrary.org/obo/CL_0000451
T18 1048-1051 Body_part denotes DCs http://purl.obolibrary.org/obo/CL_0000451
T19 1113-1130 Body_part denotes endothelial cells http://purl.obolibrary.org/obo/CL_0000115
T20 1140-1145 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T21 1150-1160 Body_part denotes lymph node http://purl.obolibrary.org/obo/UBERON_0000029

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 150-155 Body_part denotes liver http://purl.obolibrary.org/obo/MAT_0000097
T2 160-170 Body_part denotes lymph node http://purl.obolibrary.org/obo/MAT_0000197|http://purl.obolibrary.org/obo/MAT_0000442
T4 602-607 Body_part denotes liver http://purl.obolibrary.org/obo/MAT_0000097
T5 612-622 Body_part denotes lymph node http://purl.obolibrary.org/obo/MAT_0000197|http://purl.obolibrary.org/obo/MAT_0000442
T7 896-901 Body_part denotes liver http://purl.obolibrary.org/obo/MAT_0000097
T8 906-916 Body_part denotes lymph node http://purl.obolibrary.org/obo/MAT_0000197|http://purl.obolibrary.org/obo/MAT_0000442
T10 1140-1145 Body_part denotes liver http://purl.obolibrary.org/obo/MAT_0000097
T11 1150-1160 Body_part denotes lymph node http://purl.obolibrary.org/obo/MAT_0000197|http://purl.obolibrary.org/obo/MAT_0000442