PubMed:1349016
Annnotations
sentences
{"project":"sentences","denotations":[{"id":"T1","span":{"begin":0,"end":131},"obj":"Sentence"},{"id":"T2","span":{"begin":132,"end":306},"obj":"Sentence"},{"id":"T3","span":{"begin":307,"end":460},"obj":"Sentence"},{"id":"T4","span":{"begin":461,"end":713},"obj":"Sentence"},{"id":"T5","span":{"begin":714,"end":1014},"obj":"Sentence"},{"id":"T6","span":{"begin":1015,"end":1160},"obj":"Sentence"},{"id":"T7","span":{"begin":1161,"end":1346},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":131},"obj":"Sentence"},{"id":"T2","span":{"begin":132,"end":306},"obj":"Sentence"},{"id":"T3","span":{"begin":307,"end":460},"obj":"Sentence"},{"id":"T4","span":{"begin":461,"end":713},"obj":"Sentence"},{"id":"T5","span":{"begin":714,"end":1014},"obj":"Sentence"},{"id":"T6","span":{"begin":1015,"end":1160},"obj":"Sentence"},{"id":"T7","span":{"begin":1161,"end":1346},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Stable expression of HB24, a diverged human homeobox gene, in T lymphocytes induces genes involved in T cell activation and growth.\nA diverged homeobox gene, HB24, which is known to be induced following lymphocyte activation, was introduced into Jurkat T cells under the control of a constitutive promoter. Stable transfectants of HB24 were established that expressed high levels of HB24 mRNA and possessed an altered phenotype suggestive of activated T cells. A number of genes known to be induced following T cell activation and associated with cell growth were increased in the transfectants, including c-fos, c-myc, c-myb, HLA-DR, lck, NF-kappa B, interleukin-2 and interleukin-2 receptor alpha (IL-2R alpha). Analysis of IL-2R alpha expression by transient transfection of IL-2R alpha promoter constructs into the HB24 transfectants revealed constitutive expression (about 60% of phytohemagglutinin- and phorbol ester-activated Jurkat cells) that was dependent on the kappa B site in the IL-2R alpha promoter. Furthermore, as a consequence of the increased HB24 mRNA levels, the Jurkat HB24 transfectants proliferated more rapidly than control cell lines. Thus, stable expression of HB24 confers an activation phenotype on a human T cell line, implicating this gene as an important transcriptional factor during T cell activation and growth."}
jnlpba-st-training
{"project":"jnlpba-st-training","denotations":[{"id":"T1","span":{"begin":21,"end":25},"obj":"DNA"},{"id":"T2","span":{"begin":29,"end":57},"obj":"DNA"},{"id":"T3","span":{"begin":134,"end":156},"obj":"DNA"},{"id":"T4","span":{"begin":158,"end":162},"obj":"DNA"},{"id":"T5","span":{"begin":246,"end":260},"obj":"cell_line"},{"id":"T6","span":{"begin":284,"end":305},"obj":"DNA"},{"id":"T7","span":{"begin":331,"end":335},"obj":"DNA"},{"id":"T8","span":{"begin":383,"end":392},"obj":"RNA"},{"id":"T9","span":{"begin":442,"end":459},"obj":"cell_type"},{"id":"T10","span":{"begin":581,"end":594},"obj":"cell_line"},{"id":"T11","span":{"begin":606,"end":611},"obj":"DNA"},{"id":"T12","span":{"begin":613,"end":618},"obj":"DNA"},{"id":"T13","span":{"begin":620,"end":625},"obj":"DNA"},{"id":"T14","span":{"begin":627,"end":633},"obj":"DNA"},{"id":"T15","span":{"begin":635,"end":638},"obj":"DNA"},{"id":"T16","span":{"begin":640,"end":650},"obj":"protein"},{"id":"T17","span":{"begin":652,"end":665},"obj":"DNA"},{"id":"T18","span":{"begin":670,"end":698},"obj":"DNA"},{"id":"T19","span":{"begin":700,"end":711},"obj":"DNA"},{"id":"T20","span":{"begin":726,"end":737},"obj":"protein"},{"id":"T21","span":{"begin":778,"end":809},"obj":"DNA"},{"id":"T22","span":{"begin":819,"end":837},"obj":"cell_line"},{"id":"T23","span":{"begin":885,"end":945},"obj":"cell_line"},{"id":"T24","span":{"begin":973,"end":985},"obj":"DNA"},{"id":"T25","span":{"begin":993,"end":1013},"obj":"DNA"},{"id":"T26","span":{"begin":1062,"end":1071},"obj":"RNA"},{"id":"T27","span":{"begin":1084,"end":1109},"obj":"cell_line"},{"id":"T28","span":{"begin":1141,"end":1159},"obj":"cell_line"},{"id":"T29","span":{"begin":1188,"end":1192},"obj":"DNA"},{"id":"T30","span":{"begin":1230,"end":1247},"obj":"cell_line"},{"id":"T31","span":{"begin":1287,"end":1309},"obj":"protein"}],"text":"Stable expression of HB24, a diverged human homeobox gene, in T lymphocytes induces genes involved in T cell activation and growth.\nA diverged homeobox gene, HB24, which is known to be induced following lymphocyte activation, was introduced into Jurkat T cells under the control of a constitutive promoter. Stable transfectants of HB24 were established that expressed high levels of HB24 mRNA and possessed an altered phenotype suggestive of activated T cells. A number of genes known to be induced following T cell activation and associated with cell growth were increased in the transfectants, including c-fos, c-myc, c-myb, HLA-DR, lck, NF-kappa B, interleukin-2 and interleukin-2 receptor alpha (IL-2R alpha). Analysis of IL-2R alpha expression by transient transfection of IL-2R alpha promoter constructs into the HB24 transfectants revealed constitutive expression (about 60% of phytohemagglutinin- and phorbol ester-activated Jurkat cells) that was dependent on the kappa B site in the IL-2R alpha promoter. Furthermore, as a consequence of the increased HB24 mRNA levels, the Jurkat HB24 transfectants proliferated more rapidly than control cell lines. Thus, stable expression of HB24 confers an activation phenotype on a human T cell line, implicating this gene as an important transcriptional factor during T cell activation and growth."}
pubmed-sentences-benchmark
{"project":"pubmed-sentences-benchmark","denotations":[{"id":"S1","span":{"begin":0,"end":131},"obj":"Sentence"},{"id":"S2","span":{"begin":132,"end":306},"obj":"Sentence"},{"id":"S3","span":{"begin":307,"end":460},"obj":"Sentence"},{"id":"S4","span":{"begin":461,"end":713},"obj":"Sentence"},{"id":"S5","span":{"begin":714,"end":1014},"obj":"Sentence"},{"id":"S6","span":{"begin":1015,"end":1160},"obj":"Sentence"},{"id":"S7","span":{"begin":1161,"end":1346},"obj":"Sentence"}],"text":"Stable expression of HB24, a diverged human homeobox gene, in T lymphocytes induces genes involved in T cell activation and growth.\nA diverged homeobox gene, HB24, which is known to be induced following lymphocyte activation, was introduced into Jurkat T cells under the control of a constitutive promoter. Stable transfectants of HB24 were established that expressed high levels of HB24 mRNA and possessed an altered phenotype suggestive of activated T cells. A number of genes known to be induced following T cell activation and associated with cell growth were increased in the transfectants, including c-fos, c-myc, c-myb, HLA-DR, lck, NF-kappa B, interleukin-2 and interleukin-2 receptor alpha (IL-2R alpha). Analysis of IL-2R alpha expression by transient transfection of IL-2R alpha promoter constructs into the HB24 transfectants revealed constitutive expression (about 60% of phytohemagglutinin- and phorbol ester-activated Jurkat cells) that was dependent on the kappa B site in the IL-2R alpha promoter. Furthermore, as a consequence of the increased HB24 mRNA levels, the Jurkat HB24 transfectants proliferated more rapidly than control cell lines. Thus, stable expression of HB24 confers an activation phenotype on a human T cell line, implicating this gene as an important transcriptional factor during T cell activation and growth."}
genia-medco-coref
{"project":"genia-medco-coref","denotations":[{"id":"C1","span":{"begin":21,"end":25},"obj":"NP"},{"id":"C2","span":{"begin":27,"end":57},"obj":"NP"},{"id":"C3","span":{"begin":62,"end":75},"obj":"NP"},{"id":"C4","span":{"begin":102,"end":130},"obj":"NP"},{"id":"C5","span":{"begin":132,"end":156},"obj":"NP"},{"id":"C6","span":{"begin":158,"end":162},"obj":"NP"},{"id":"C7","span":{"begin":164,"end":169},"obj":"NP"},{"id":"C8","span":{"begin":246,"end":260},"obj":"NP"},{"id":"C10","span":{"begin":331,"end":335},"obj":"NP"},{"id":"C9","span":{"begin":307,"end":335},"obj":"NP"},{"id":"C11","span":{"begin":368,"end":392},"obj":"NP"},{"id":"C12","span":{"begin":577,"end":594},"obj":"NP"},{"id":"C13","span":{"begin":670,"end":712},"obj":"NP"},{"id":"C14","span":{"begin":726,"end":748},"obj":"NP"},{"id":"C15","span":{"begin":778,"end":809},"obj":"NP"},{"id":"C16","span":{"begin":815,"end":837},"obj":"NP"},{"id":"C17","span":{"begin":989,"end":1013},"obj":"NP"},{"id":"C18","span":{"begin":1048,"end":1078},"obj":"NP"},{"id":"C19","span":{"begin":1080,"end":1109},"obj":"NP"},{"id":"C20","span":{"begin":1188,"end":1192},"obj":"NP"},{"id":"C21","span":{"begin":1261,"end":1270},"obj":"NP"},{"id":"C22","span":{"begin":1317,"end":1345},"obj":"NP"}],"relations":[{"id":"R1","pred":"coref-appos","subj":"C2","obj":"C1"},{"id":"R2","pred":"coref-ident","subj":"C5","obj":"C2"},{"id":"R3","pred":"coref-appos","subj":"C6","obj":"C5"},{"id":"R4","pred":"coref-relat","subj":"C7","obj":"C6"},{"id":"R5","pred":"coref-other","subj":"C8","obj":"C3"},{"id":"R6","pred":"coref-ident","subj":"C10","obj":"C6"},{"id":"R7","pred":"coref-ident","subj":"C12","obj":"C9"},{"id":"R8","pred":"coref-other","subj":"C14","obj":"C13"},{"id":"R9","pred":"coref-ident","subj":"C16","obj":"C12"},{"id":"R10","pred":"coref-other","subj":"C17","obj":"C15"},{"id":"R11","pred":"coref-other","subj":"C18","obj":"C11"},{"id":"R12","pred":"coref-other","subj":"C19","obj":"C16"},{"id":"R13","pred":"coref-ident","subj":"C20","obj":"C10"},{"id":"R14","pred":"coref-ident","subj":"C21","obj":"C20"},{"id":"R15","pred":"coref-ident","subj":"C22","obj":"C4"}],"text":"Stable expression of HB24, a diverged human homeobox gene, in T lymphocytes induces genes involved in T cell activation and growth.\nA diverged homeobox gene, HB24, which is known to be induced following lymphocyte activation, was introduced into Jurkat T cells under the control of a constitutive promoter. Stable transfectants of HB24 were established that expressed high levels of HB24 mRNA and possessed an altered phenotype suggestive of activated T cells. A number of genes known to be induced following T cell activation and associated with cell growth were increased in the transfectants, including c-fos, c-myc, c-myb, HLA-DR, lck, NF-kappa B, interleukin-2 and interleukin-2 receptor alpha (IL-2R alpha). Analysis of IL-2R alpha expression by transient transfection of IL-2R alpha promoter constructs into the HB24 transfectants revealed constitutive expression (about 60% of phytohemagglutinin- and phorbol ester-activated Jurkat cells) that was dependent on the kappa B site in the IL-2R alpha promoter. Furthermore, as a consequence of the increased HB24 mRNA levels, the Jurkat HB24 transfectants proliferated more rapidly than control cell lines. Thus, stable expression of HB24 confers an activation phenotype on a human T cell line, implicating this gene as an important transcriptional factor during T cell activation and growth."}
GENIAcorpus
{"project":"GENIAcorpus","denotations":[{"id":"T1","span":{"begin":21,"end":25},"obj":"DNA_domain_or_region"},{"id":"T2","span":{"begin":29,"end":57},"obj":"DNA_family_or_group"},{"id":"T3","span":{"begin":134,"end":156},"obj":"DNA_family_or_group"},{"id":"T4","span":{"begin":158,"end":162},"obj":"DNA_domain_or_region"},{"id":"T5","span":{"begin":203,"end":224},"obj":"other_name"},{"id":"T6","span":{"begin":246,"end":260},"obj":"cell_line"},{"id":"T7","span":{"begin":284,"end":305},"obj":"DNA_domain_or_region"},{"id":"T8","span":{"begin":331,"end":335},"obj":"DNA_domain_or_region"},{"id":"T9","span":{"begin":383,"end":392},"obj":"RNA_molecule"},{"id":"T10","span":{"begin":442,"end":459},"obj":"cell_type"},{"id":"T11","span":{"begin":509,"end":526},"obj":"other_name"},{"id":"T12","span":{"begin":547,"end":558},"obj":"other_name"},{"id":"T13","span":{"begin":581,"end":594},"obj":"cell_line"},{"id":"T14","span":{"begin":606,"end":611},"obj":"DNA_domain_or_region"},{"id":"T15","span":{"begin":613,"end":618},"obj":"DNA_domain_or_region"},{"id":"T16","span":{"begin":620,"end":625},"obj":"DNA_domain_or_region"},{"id":"T17","span":{"begin":627,"end":633},"obj":"DNA_domain_or_region"},{"id":"T18","span":{"begin":635,"end":638},"obj":"DNA_domain_or_region"},{"id":"T19","span":{"begin":640,"end":650},"obj":"protein_molecule"},{"id":"T20","span":{"begin":652,"end":665},"obj":"DNA_domain_or_region"},{"id":"T21","span":{"begin":670,"end":698},"obj":"DNA_domain_or_region"},{"id":"T22","span":{"begin":700,"end":711},"obj":"DNA_domain_or_region"},{"id":"T23","span":{"begin":726,"end":737},"obj":"protein_molecule"},{"id":"T24","span":{"begin":752,"end":774},"obj":"other_name"},{"id":"T25","span":{"begin":778,"end":809},"obj":"DNA_molecule"},{"id":"T26","span":{"begin":819,"end":823},"obj":"DNA_domain_or_region"},{"id":"T27","span":{"begin":847,"end":870},"obj":"other_name"},{"id":"T28","span":{"begin":973,"end":985},"obj":"DNA_domain_or_region"},{"id":"T29","span":{"begin":993,"end":1013},"obj":"DNA_domain_or_region"},{"id":"T30","span":{"begin":1062,"end":1071},"obj":"RNA_molecule"},{"id":"T31","span":{"begin":1084,"end":1090},"obj":"cell_line"},{"id":"T32","span":{"begin":1091,"end":1095},"obj":"DNA_domain_or_region"},{"id":"T33","span":{"begin":1141,"end":1159},"obj":"cell_line"},{"id":"T34","span":{"begin":1188,"end":1192},"obj":"DNA_domain_or_region"},{"id":"T35","span":{"begin":1204,"end":1224},"obj":"other_name"},{"id":"T36","span":{"begin":1230,"end":1247},"obj":"cell_line"},{"id":"T37","span":{"begin":1287,"end":1309},"obj":"protein_molecule"}],"text":"Stable expression of HB24, a diverged human homeobox gene, in T lymphocytes induces genes involved in T cell activation and growth.\nA diverged homeobox gene, HB24, which is known to be induced following lymphocyte activation, was introduced into Jurkat T cells under the control of a constitutive promoter. Stable transfectants of HB24 were established that expressed high levels of HB24 mRNA and possessed an altered phenotype suggestive of activated T cells. A number of genes known to be induced following T cell activation and associated with cell growth were increased in the transfectants, including c-fos, c-myc, c-myb, HLA-DR, lck, NF-kappa B, interleukin-2 and interleukin-2 receptor alpha (IL-2R alpha). Analysis of IL-2R alpha expression by transient transfection of IL-2R alpha promoter constructs into the HB24 transfectants revealed constitutive expression (about 60% of phytohemagglutinin- and phorbol ester-activated Jurkat cells) that was dependent on the kappa B site in the IL-2R alpha promoter. Furthermore, as a consequence of the increased HB24 mRNA levels, the Jurkat HB24 transfectants proliferated more rapidly than control cell lines. Thus, stable expression of HB24 confers an activation phenotype on a human T cell line, implicating this gene as an important transcriptional factor during T cell activation and growth."}
NCBITAXON
{"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":38,"end":43},"obj":"OrganismTaxon"},{"id":"T2","span":{"begin":1230,"end":1235},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"9606"},{"id":"A2","pred":"db_id","subj":"T2","obj":"9606"}],"text":"Stable expression of HB24, a diverged human homeobox gene, in T lymphocytes induces genes involved in T cell activation and growth.\nA diverged homeobox gene, HB24, which is known to be induced following lymphocyte activation, was introduced into Jurkat T cells under the control of a constitutive promoter. Stable transfectants of HB24 were established that expressed high levels of HB24 mRNA and possessed an altered phenotype suggestive of activated T cells. A number of genes known to be induced following T cell activation and associated with cell growth were increased in the transfectants, including c-fos, c-myc, c-myb, HLA-DR, lck, NF-kappa B, interleukin-2 and interleukin-2 receptor alpha (IL-2R alpha). Analysis of IL-2R alpha expression by transient transfection of IL-2R alpha promoter constructs into the HB24 transfectants revealed constitutive expression (about 60% of phytohemagglutinin- and phorbol ester-activated Jurkat cells) that was dependent on the kappa B site in the IL-2R alpha promoter. Furthermore, as a consequence of the increased HB24 mRNA levels, the Jurkat HB24 transfectants proliferated more rapidly than control cell lines. Thus, stable expression of HB24 confers an activation phenotype on a human T cell line, implicating this gene as an important transcriptional factor during T cell activation and growth."}
Anatomy-UBERON
{"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":62,"end":75},"obj":"Body_part"},{"id":"T2","span":{"begin":102,"end":108},"obj":"Body_part"},{"id":"T3","span":{"begin":203,"end":213},"obj":"Body_part"},{"id":"T4","span":{"begin":509,"end":515},"obj":"Body_part"},{"id":"T5","span":{"begin":1236,"end":1242},"obj":"Body_part"},{"id":"T6","span":{"begin":1317,"end":1323},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CL_0000542"},{"id":"A4","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"A5","pred":"uberon_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"A6","pred":"uberon_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/CL_0000084"}],"text":"Stable expression of HB24, a diverged human homeobox gene, in T lymphocytes induces genes involved in T cell activation and growth.\nA diverged homeobox gene, HB24, which is known to be induced following lymphocyte activation, was introduced into Jurkat T cells under the control of a constitutive promoter. Stable transfectants of HB24 were established that expressed high levels of HB24 mRNA and possessed an altered phenotype suggestive of activated T cells. A number of genes known to be induced following T cell activation and associated with cell growth were increased in the transfectants, including c-fos, c-myc, c-myb, HLA-DR, lck, NF-kappa B, interleukin-2 and interleukin-2 receptor alpha (IL-2R alpha). Analysis of IL-2R alpha expression by transient transfection of IL-2R alpha promoter constructs into the HB24 transfectants revealed constitutive expression (about 60% of phytohemagglutinin- and phorbol ester-activated Jurkat cells) that was dependent on the kappa B site in the IL-2R alpha promoter. Furthermore, as a consequence of the increased HB24 mRNA levels, the Jurkat HB24 transfectants proliferated more rapidly than control cell lines. Thus, stable expression of HB24 confers an activation phenotype on a human T cell line, implicating this gene as an important transcriptional factor during T cell activation and growth."}
CL-cell
{"project":"CL-cell","denotations":[{"id":"T1","span":{"begin":62,"end":75},"obj":"Cell"},{"id":"T2","span":{"begin":102,"end":108},"obj":"Cell"},{"id":"T3","span":{"begin":203,"end":213},"obj":"Cell"},{"id":"T4","span":{"begin":253,"end":260},"obj":"Cell"},{"id":"T5","span":{"begin":452,"end":459},"obj":"Cell"},{"id":"T6","span":{"begin":509,"end":515},"obj":"Cell"},{"id":"T7","span":{"begin":1236,"end":1242},"obj":"Cell"},{"id":"T8","span":{"begin":1317,"end":1323},"obj":"Cell"}],"attributes":[{"id":"A1","pred":"cl_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL:0000084"},{"id":"A2","pred":"cl_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CL:0000084"},{"id":"A3","pred":"cl_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CL:0000542"},{"id":"A4","pred":"cl_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CL:0000084"},{"id":"A5","pred":"cl_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CL:0000084"},{"id":"A6","pred":"cl_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/CL:0000084"},{"id":"A7","pred":"cl_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CL:0000084"},{"id":"A8","pred":"cl_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/CL:0000084"}],"text":"Stable expression of HB24, a diverged human homeobox gene, in T lymphocytes induces genes involved in T cell activation and growth.\nA diverged homeobox gene, HB24, which is known to be induced following lymphocyte activation, was introduced into Jurkat T cells under the control of a constitutive promoter. Stable transfectants of HB24 were established that expressed high levels of HB24 mRNA and possessed an altered phenotype suggestive of activated T cells. A number of genes known to be induced following T cell activation and associated with cell growth were increased in the transfectants, including c-fos, c-myc, c-myb, HLA-DR, lck, NF-kappa B, interleukin-2 and interleukin-2 receptor alpha (IL-2R alpha). Analysis of IL-2R alpha expression by transient transfection of IL-2R alpha promoter constructs into the HB24 transfectants revealed constitutive expression (about 60% of phytohemagglutinin- and phorbol ester-activated Jurkat cells) that was dependent on the kappa B site in the IL-2R alpha promoter. Furthermore, as a consequence of the increased HB24 mRNA levels, the Jurkat HB24 transfectants proliferated more rapidly than control cell lines. Thus, stable expression of HB24 confers an activation phenotype on a human T cell line, implicating this gene as an important transcriptional factor during T cell activation and growth."}