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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 65-69 protein denotes AP-1
T2 90-105 cell_type denotes human monocytes
T3 176-200 protein denotes proinflammatory mediator
T4 227-258 DNA denotes proto-oncogenes c-jun and c-fos
T5 304-319 protein denotes nuclear factors
T6 348-360 DNA denotes AP-1 element
T7 422-432 DNA denotes c-fos gene
T8 484-494 RNA denotes c-jun mRNA
T9 533-565 cell_type denotes human peripheral-blood monocytes
T10 667-672 DNA denotes c-fos
T11 753-763 RNA denotes c-fos mRNA
T12 812-817 DNA denotes c-jun
T13 889-894 DNA denotes c-fos
T14 899-909 RNA denotes c-jun mRNA
T15 1070-1080 DNA denotes c-fos gene
T16 1096-1106 DNA denotes c-jun gene
T17 1117-1134 cell_type denotes Resting monocytes
T18 1145-1160 protein denotes nuclear factors
T19 1176-1188 DNA denotes AP-1 element
T20 1209-1218 cell_type denotes monocytes
T21 1245-1249 protein denotes AP-1
T22 1270-1286 protein denotes nuclear proteins
T23 1362-1371 protein denotes cytokines
T24 1419-1440 protein denotes transcription factors
T25 1449-1453 protein denotes AP-1
T26 1462-1485 protein denotes proto-oncogene products

semrep-sample

Id Subject Object Predicate Lexical cue
E1-ti-1 0-14 cui:C0023546 denotes Leukotriene B4
E2-ti-1 26-31 cui:C0085301 denotes c-fos
E3-ti-1 36-46 cui:C0085299 denotes c-jun gene
E4-ti-1 47-60 cui:C0040649 denotes transcription
E5-ti-1 65-69 cui:C0002059 denotes AP-1
E6-ti-1 78-86 cui:C0439167 denotes activity
E7-ti-1 90-95 cui:C0020114 denotes human
E8-ti-1 96-105 cui:C0026473 denotes monocytes
T1 15-25 STIMULATES denotes stimulates
T2 15-25 STIMULATES denotes stimulates
T3 15-25 STIMULATES denotes stimulates
T4 90-105 PART_OF denotes human monocytes
E1-ab-1 128-134 cui:C1280500 denotes effect
E2-ab-1 138-152 cui:C0023546 denotes leukotriene B4
E3-ab-1 163-169 cui:C0237399 denotes potent
E4-ab-1 170-200 cui:C0599745 denotes lipid proinflammatory mediator
E5-ab-1 209-219 cui:C0185117 denotes expression
E6-ab-1 233-248 cui:C0162508 denotes oncogenes c-jun
E7-ab-1 253-258 cui:C0085301 denotes c-fos
T5 128-134 INTERACTS_WITH denotes effect
E1-ab-2 263-271 cui:C0442796 denotes addition
E2-ab-2 304-311 cui:C0521447 denotes nuclear
E3-ab-2 312-319 cui:C1521761 denotes factors
E4-ab-2 348-352 cui:C0002059 denotes AP-1
E5-ab-2 353-360 cui:C0013879 denotes element
E6-ab-2 367-371 cui:C0023546 denotes LTB4
E7-ab-2 372-383 cui:C1292856 denotes stimulation
T6 372-383 STIMULATES denotes stimulation
E1-ab-3 385-389 cui:C0023546 denotes LTB4
E2-ab-3 404-414 cui:C0185117 denotes expression
E3-ab-3 422-432 cui:C0085940 denotes c-fos gene
E4-ab-3 438-442 cui:C0040223 denotes time
T7 390-399 STIMULATES denotes increased
E1-ab-4 484-489 cui:C0085942 denotes c-jun
E2-ab-4 490-494 cui:C0035696 denotes mRNA
E3-ab-4 533-538 cui:C0020114 denotes human
E4-ab-4 539-550 cui:C0205100 denotes peripheral-
E5-ab-4 550-565 cui:C0026473 denotes blood monocytes
E6-ab-4 580-584 cui:C0205250 denotes high
E7-ab-4 585-591 cui:C0441889 denotes levels
E8-ab-4 602-610 cui:C0750482 denotes slightly
E9-ab-4 624-628 cui:C0023546 denotes LTB4
E10-ab-4 649-654 cui:C0441994 denotes lower
E11-ab-4 655-661 cui:C0439792 denotes extent
E12-ab-4 667-672 cui:C0085301 denotes c-fos
T8 520-529 PART_OF denotes expressed
T9 611-620 STIMULATES denotes augmented
E1-ab-5 678-686 cui:C0022702 denotes kinetics
E2-ab-5 690-700 cui:C0185117 denotes expression
E3-ab-5 708-711 cui:C0205448 denotes two
E4-ab-5 712-717 cui:C0017337 denotes genes
E5-ab-5 728-736 cui:C0750482 denotes slightly
E6-ab-5 737-746 cui:C1547020 denotes different
E7-ab-5 753-758 cui:C0085301 denotes c-fos
E8-ab-5 759-763 cui:C0035696 denotes mRNA
E9-ab-5 786-789 cui:C1524031 denotes min
E10-ab-5 796-807 cui:C1292856 denotes stimulation
E11-ab-5 812-817 cui:C0085942 denotes c-jun
E12-ab-5 821-827 cui:C0456693 denotes 30 min
T10 790-795 PRECEDES denotes after
E1-ab-6 834-842 cui:C0470166 denotes messages
E1-ab-7 872-881 cui:C1317741 denotes Stability
E2-ab-7 889-894 cui:C0085301 denotes c-fos
E3-ab-7 899-904 cui:C0085942 denotes c-jun
E4-ab-7 905-909 cui:C0035696 denotes mRNA
E5-ab-7 914-917 cui:C1518422 denotes not
E6-ab-7 930-934 cui:C0023546 denotes LTB4
E7-ab-7 954-967 cui:C0010934 denotes actinomycin D
T11 918-926 INTERACTS_WITH denotes affected
T12 918-926 INTERACTS_WITH denotes affected
E1-ab-8 979-986 cui:C0521447 denotes Nuclear
E2-ab-8 987-1000 cui:C0040649 denotes transcription
E3-ab-8 1030-1034 cui:C0023546 denotes LTB4
E4-ab-8 1049-1062 cui:C0040649 denotes transcription
E5-ab-8 1070-1080 cui:C0085940 denotes c-fos gene
E6-ab-8 1083-1087 cui:C0332462 denotes fold
E7-ab-8 1096-1106 cui:C0085299 denotes c-jun gene
E8-ab-8 1111-1115 cui:C0332462 denotes fold
T13 1035-1044 AUGMENTS denotes increased
E1-ab-9 1117-1124 cui:C0035253 denotes Resting
E2-ab-9 1125-1134 cui:C0026473 denotes monocytes
E3-ab-9 1145-1152 cui:C0521447 denotes nuclear
E4-ab-9 1153-1160 cui:C1521761 denotes factors
E5-ab-9 1176-1180 cui:C0002059 denotes AP-1
E6-ab-9 1181-1188 cui:C0013879 denotes element
E7-ab-9 1194-1205 cui:C1292856 denotes stimulation
E8-ab-9 1209-1218 cui:C0026473 denotes monocytes
E9-ab-9 1224-1228 cui:C0023546 denotes LTB4
E10-ab-9 1237-1244 cui:C0443228 denotes greater
E11-ab-9 1245-1249 cui:C0002059 denotes AP-1
E12-ab-9 1258-1266 cui:C0439167 denotes activity
E13-ab-9 1270-1286 cui:C0028589 denotes nuclear proteins
T14 1194-1205 AUGMENTS denotes stimulation
T15 1229-1236 STIMULATES denotes induced
E1-ab-10 1294-1301 cui:C1274040 denotes results
E2-ab-10 1316-1320 cui:C0023546 denotes LTB4
E3-ab-10 1338-1348 cui:C0033268 denotes production
E4-ab-10 1352-1361 cui:C1547020 denotes different
E5-ab-10 1362-1371 cui:C0079189 denotes cytokines
E6-ab-10 1375-1385 cui:C0443264 denotes modulating
E7-ab-10 1407-1415 cui:C0542341 denotes function
E8-ab-10 1419-1440 cui:C0040648 denotes transcription factors
E9-ab-10 1449-1453 cui:C0002059 denotes AP-1
E10-ab-10 1468-1485 cui:C0029005 denotes oncogene products
T16 1325-1333 INTERACTS_WITH denotes regulate
R1 E1-ti-1 T1 subjectOf Leukotriene B4,stimulates
R2 E2-ti-1 T1 objectOf c-fos,stimulates
R3 E1-ti-1 T2 subjectOf Leukotriene B4,stimulates
R4 E5-ti-1 T2 objectOf AP-1,stimulates
R5 E1-ti-1 T3 subjectOf Leukotriene B4,stimulates
R6 E3-ti-1 T3 objectOf c-jun gene,stimulates
R7 E8-ti-1 T4 subjectOf monocytes,human monocytes
R8 E7-ti-1 T4 objectOf human,human monocytes
R9 E4-ab-1 T5 subjectOf lipid proinflammatory mediator,effect
R10 E2-ab-1 T5 objectOf leukotriene B4,effect
R11 E4-ab-2 T6 subjectOf AP-1,stimulation
R12 E6-ab-2 T6 objectOf LTB4,stimulation
R13 E1-ab-3 T7 subjectOf LTB4,increased
R14 E3-ab-3 T7 objectOf c-fos gene,increased
R15 E1-ab-4 T8 subjectOf c-jun,expressed
R16 E5-ab-4 T8 objectOf blood monocytes,expressed
R17 E9-ab-4 T9 subjectOf LTB4,augmented
R18 E1-ab-4 T9 objectOf c-jun,augmented
R19 E10-ab-5 T10 subjectOf stimulation,after
R20 E2-ab-5 T10 objectOf expression,after
R21 E6-ab-7 T11 subjectOf LTB4,affected
R22 E3-ab-7 T11 objectOf c-jun,affected
R23 E6-ab-7 T12 subjectOf LTB4,affected
R24 E2-ab-7 T12 objectOf c-fos,affected
R25 E3-ab-8 T13 subjectOf LTB4,increased
R26 E4-ab-8 T13 objectOf transcription,increased
R27 E9-ab-9 T14 subjectOf LTB4,stimulation
R28 E8-ab-9 T14 objectOf monocytes,stimulation
R29 E9-ab-9 T15 subjectOf LTB4,induced
R30 E13-ab-9 T15 objectOf nuclear proteins,induced
R31 E2-ab-10 T16 subjectOf LTB4,regulate
R32 E5-ab-10 T16 objectOf cytokines,regulate

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-106 Sentence denotes Leukotriene B4 stimulates c-fos and c-jun gene transcription and AP-1 binding activity in human monocytes.
S2 107-259 Sentence denotes We have examined the effect of leukotriene B4 (LTB4), a potent lipid proinflammatory mediator, on the expression of the proto-oncogenes c-jun and c-fos.
S3 260-384 Sentence denotes In addition, we looked at the modulation of nuclear factors binding specifically to the AP-1 element after LTB4 stimulation.
S4 385-479 Sentence denotes LTB4 increased the expression of the c-fos gene in a time- and concentration-dependent manner.
S5 480-673 Sentence denotes The c-jun mRNA, which is constitutively expressed in human peripheral-blood monocytes at relatively high levels, was also slightly augmented by LTB4, although to a much lower extent than c-fos.
S6 674-828 Sentence denotes The kinetics of expression of the two genes were also slightly different, with c-fos mRNA reaching a peak at 15 min after stimulation and c-jun at 30 min.
S7 829-871 Sentence denotes Both messages rapidly declined thereafter.
S8 872-978 Sentence denotes Stability of the c-fos and c-jun mRNA was not affected by LTB4, as assessed after actinomycin D treatment.
S9 979-1116 Sentence denotes Nuclear transcription studies in vitro showed that LTB4 increased the transcription of the c-fos gene 7-fold and the c-jun gene 1.4-fold.
S10 1117-1287 Sentence denotes Resting monocytes contained nuclear factors binding to the AP-1 element, but stimulation of monocytes with LTB4 induced greater AP-1-binding activity of nuclear proteins.
S11 1288-1486 Sentence denotes These results indicate that LTB4 may regulate the production of different cytokines by modulating the yield and/or the function of transcription factors such as AP-1-binding proto-oncogene products.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 0-14 NP denotes Leukotriene B4
C2 26-31 NP denotes c-fos
C3 65-86 NP denotes AP-1 binding activity
C4 90-105 NP denotes human monocytes
C5 138-159 NP denotes leukotriene B4 (LTB4)
C6 161-200 NP denotes a potent lipid proinflammatory mediator
C8 223-248 NP denotes the proto-oncogenes c-jun
C9 253-258 NP denotes c-fos
C7 223-258 NP denotes the proto-oncogenes c-jun and c-fos
C10 304-319 NP denotes nuclear factors
C11 344-360 NP denotes the AP-1 element
C12 385-389 NP denotes LTB4
C13 418-432 NP denotes the c-fos gene
C15 484-489 NP denotes c-jun
C14 480-494 NP denotes The c-jun mRNA
C16 496-501 NP denotes which
C17 624-628 NP denotes LTB4
C18 667-672 NP denotes c-fos
C19 704-717 NP denotes the two genes
C20 753-763 NP denotes c-fos mRNA
C21 812-817 NP denotes c-jun
C22 885-894 NP denotes the c-fos
C24 899-904 NP denotes c-jun
C23 899-909 NP denotes c-jun mRNA
C25 930-934 NP denotes LTB4
C26 1030-1034 NP denotes LTB4
C27 1066-1080 NP denotes the c-fos gene
C28 1092-1106 NP denotes the c-jun gene
C29 1145-1160 NP denotes nuclear factors
C30 1172-1188 NP denotes the AP-1 element
C31 1209-1218 NP denotes monocytes
C32 1224-1228 NP denotes LTB4
C33 1245-1266 NP denotes AP-1-binding activity
C34 1316-1320 NP denotes LTB4
R1 C5 C1 coref-ident leukotriene B4 (LTB4),Leukotriene B4
R2 C6 C5 coref-appos a potent lipid proinflammatory mediator,leukotriene B4 (LTB4)
R3 C9 C2 coref-ident c-fos,c-fos
R4 C12 C5 coref-ident LTB4,leukotriene B4 (LTB4)
R5 C13 C9 coref-ident the c-fos gene,c-fos
R6 C15 C8 coref-ident c-jun,the proto-oncogenes c-jun
R7 C16 C14 coref-relat which,The c-jun mRNA
R8 C17 C12 coref-ident LTB4,LTB4
R9 C18 C13 coref-ident c-fos,the c-fos gene
R10 C19 C7 coref-ident the two genes,the proto-oncogenes c-jun and c-fos
R11 C20 C18 coref-other c-fos mRNA,c-fos
R12 C21 C15 coref-ident c-jun,c-jun
R13 C22 C18 coref-ident the c-fos,c-fos
R14 C24 C21 coref-ident c-jun,c-jun
R15 C23 C14 coref-ident c-jun mRNA,The c-jun mRNA
R16 C25 C17 coref-ident LTB4,LTB4
R17 C26 C25 coref-ident LTB4,LTB4
R18 C27 C22 coref-ident the c-fos gene,the c-fos
R19 C28 C24 coref-ident the c-jun gene,c-jun
R20 C29 C10 coref-ident nuclear factors,nuclear factors
R21 C30 C11 coref-ident the AP-1 element,the AP-1 element
R22 C31 C4 coref-ident monocytes,human monocytes
R23 C32 C26 coref-ident LTB4,LTB4
R24 C33 C3 coref-ident AP-1-binding activity,AP-1 binding activity
R25 C34 C32 coref-ident LTB4,LTB4

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-14 other_organic_compound denotes Leukotriene B4
T2 65-69 protein_molecule denotes AP-1
T3 90-105 cell_type denotes human monocytes
T4 138-152 other_organic_compound denotes leukotriene B4
T5 154-158 other_organic_compound denotes LTB4
T6 163-175 other_name denotes potent lipid
T7 176-200 protein_family_or_group denotes proinflammatory mediator
T8 304-319 protein_family_or_group denotes nuclear factors
T9 348-360 DNA_domain_or_region denotes AP-1 element
T10 367-371 other_organic_compound denotes LTB4
T11 385-389 other_organic_compound denotes LTB4
T12 422-432 DNA_domain_or_region denotes c-fos gene
T13 484-494 RNA_molecule denotes c-jun mRNA
T14 533-565 cell_type denotes human peripheral-blood monocytes
T15 624-628 other_organic_compound denotes LTB4
T16 667-672 DNA_domain_or_region denotes c-fos
T17 753-763 RNA_molecule denotes c-fos mRNA
T18 812-817 DNA_domain_or_region denotes c-jun
T19 889-894 DNA_domain_or_region denotes c-fos
T20 899-909 RNA_molecule denotes c-jun mRNA
T21 930-934 other_organic_compound denotes LTB4
T22 954-967 other_organic_compound denotes actinomycin D
T23 1030-1034 other_organic_compound denotes LTB4
T24 1070-1080 DNA_domain_or_region denotes c-fos gene
T25 1096-1106 DNA_domain_or_region denotes c-jun gene
T26 1117-1134 cell_type denotes Resting monocytes
T27 1145-1160 protein_family_or_group denotes nuclear factors
T28 1176-1188 DNA_domain_or_region denotes AP-1 element
T29 1209-1218 cell_type denotes monocytes
T30 1224-1228 other_organic_compound denotes LTB4
T31 1245-1249 protein_molecule denotes AP-1
T32 1270-1286 protein_family_or_group denotes nuclear proteins
T33 1316-1320 other_organic_compound denotes LTB4
T34 1362-1371 protein_molecule denotes cytokines
T35 1419-1440 protein_family_or_group denotes transcription factors
T36 1449-1453 protein_molecule denotes AP-1
T37 1462-1485 protein_family_or_group denotes proto-oncogene products

metamap-sample

Id Subject Object Predicate Lexical cue
T1 754-759 C0085940 denotes -fos
T2 668-673 C0085940 denotes -fos.
T3 254-259 C0085940 denotes -fos.
T4 27-32 C0085940 denotes -fos
T5 534-539 C0086418 denotes uman
T6 91-96 C0086418 denotes uman
T7 1317-1321 C0023546 denotes TB4
T8 1225-1229 C0023546 denotes TB4
T9 1031-1035 C0023546 denotes TB4
T10 931-935 C0023546 denotes TB4,
T11 625-629 C0023546 denotes TB4,
T12 386-390 C0023546 denotes TB4
T13 368-372 C0023546 denotes TB4
T14 139-153 C0023546 denotes eukotriene B4
T15 1-15 C0023546 denotes eukotriene B4
T16 97-106 C0026473 denotes onocytes.
T17 1450-1454 C0085828 denotes P-1-
T18 349-353 C0085828 denotes P-1
T19 66-70 C0085828 denotes P-1
T20 988-1001 C0040649 denotes ranscription
T21 43-61 C0040649 denotes ene transcription
T22 1251-1267 C2266866 denotes inding activity
T23 900-905 C0162508 denotes -jun
T24 813-818 C0162508 denotes -jun
T25 485-490 C0162508 denotes -jun
T26 37-42 C0162508 denotes -jun
T27 1455-1462 C1145667 denotes inding
T28 1162-1169 C1145667 denotes inding
T29 321-327 C1145667 denotes inding
T30 71-77 C1145667 denotes inding
T31 906-910 C0035696 denotes RNA
T32 760-764 C0035696 denotes RNA
T33 491-495 C0035696 denotes RNA,
T34 1099-1107 C0085299 denotes un gene
T35 1463-1477 C0033713 denotes roto-oncogene
T36 931-935 C3538778 denotes TB4,
T37 625-629 C3538778 denotes TB4,
T38 368-372 C3538778 denotes TB4
T39 139-153 C3538778 denotes eukotriene B4
T40 1182-1189 C0013879 denotes lement,
T41 354-361 C0013879 denotes lement
T42 955-968 C0010934 denotes ctinomycin D
T43 1118-1125 C0035253 denotes esting
T44 1036-1045 C0205217 denotes ncreased
T45 612-621 C0205217 denotes ugmented
T46 391-400 C0205217 denotes ncreased
T47 1195-1206 C1292856 denotes timulation
T48 797-808 C1292856 denotes timulation
T49 373-384 C1292856 denotes timulation.
T50 1146-1153 C0521447 denotes uclear
T51 980-987 C0521447 denotes uclear
T52 305-312 C0521447 denotes uclear
T53 1271-1287 C0028589 denotes uclear proteins.
T54 1010-1018 C0021135 denotes n vitro
T55 439-443 C0040223 denotes ime-
T56 1376-1386 C0443264 denotes odulating
T57 291-301 C0443264 denotes odulation
T58 1154-1161 C1521761 denotes actors
T59 313-320 C1521761 denotes actors
T60 729-737 C0750482 denotes lightly
T61 603-611 C0750482 denotes lightly
T62 1353-1362 C1705242 denotes ifferent
T63 738-747 C1705242 denotes ifferent,
T64 264-272 C1883712 denotes ddition,
T65 1136-1145 C2700400 denotes ontained
T66 116-124 C0332128 denotes xamined
T67 210-220 C0185117 denotes xpression
T68 1230-1237 C0205263 denotes nduced
T69 915-918 C1518422 denotes ot
T70 765-773 C2584321 denotes eaching
T71 1002-1009 C2603343 denotes tudies
T72 228-249 C3536909 denotes roto-oncogenes c-jun
T73 1295-1302 C1274040 denotes esults
T74 1019-1025 C1547282 denotes howed
T75 835-843 C0470166 denotes essages
T76 586-592 C0441889 denotes evels,
T77 540-565 C1321301 denotes eripheral-blood monocytes
T78 1478-1486 C1514468 denotes roducts.
T79 919-927 C1314939 denotes ffected
T80 940-948 C1516048 denotes ssessed
T81 129-135 C1280500 denotes ffect
T82 1408-1416 C0542341 denotes unction
T83 873-882 C2347098 denotes tability
T84 776-780 C0444505 denotes eak
T85 969-978 C0087111 denotes reatment.
T86 656-662 C0439792 denotes xtent
T87 650-655 C0441994 denotes ower
T88 679-687 C0220865 denotes inetics
T89 277-283 C0233426 denotes ooked
T90 844-851 C1637379 denotes apidly
T91 449-462 C1446561 denotes oncentration-
T92 463-472 C0851827 denotes ependent
T93 581-585 C0205250 denotes igh
T94 822-828 C1442458 denotes 0 min.
T95 787-790 C0702093 denotes in
T96 1238-1245 C1704243 denotes reater
T97 709-712 C0205448 denotes wo
T98 164-170 C3245505 denotes otent