PubMed:11939564 JSONTXT

{"target":"http://pubannotation.org/docs/sourcedb/PubMed/sourceid/11939564","sourcedb":"PubMed","sourceid":"11939564","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/11939564","text":"Positional cloning of rice semidwarfing gene, sd-1: rice \"green revolution gene\" encodes a mutant enzyme involved in gibberellin synthesis.\nA rice semidwarfing gene, sd-1, known as the \"green revolution gene,\" was isolated by positional cloning and revealed to encode gibberellin 20-oxidase, the key enzyme in the gibberellin biosynthesis pathway. Analysis of 3477 segregants using several PCR-based marker technologies, including cleaved amplified polymorphic sequence, derived-CAPS, and single nucleotide polymorphisms revealed 1 ORF in a 6-kb candidate interval. Normal-type rice cultivars have an identical sequence in this region, consisting of 3 exons (558, 318, and 291 bp) and 2 introns (105 and 1471 bp). Dee-Geo-Woo-Gen-type sd-1 mutants have a 383-bp deletion from the genome (278-bp deletion from the expressed sequence), from the middle of exon 1 to upstream of exon 2, including a 105-bp intron, resulting in a frame-shift that produces a termination codon after the deletion site. The radiation-induced sd-1 mutant Calrose 76 has a 1-bp substitution in exon 2, causing an amino acid substitution (Leu [CTC] to Phe [TTC]). Expression analysis suggests the existence of at least one more locus of gibberellin 20-oxidase which may prevent severe dwarfism from developing in sd-1 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