PubMed:11439191
Annnotations
GGDB-2020
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 744-751 | https://acgg.asia/db/ggdb/info/gg004 | denotes | Lewis x |
| T2 | 744-751 | https://acgg.asia/db/ggdb/info/gg005 | denotes | Lewis x |
| T3 | 744-751 | https://acgg.asia/db/ggdb/info/gg006 | denotes | Lewis x |
| T4 | 744-751 | https://acgg.asia/db/ggdb/info/gg007 | denotes | Lewis x |
| T5 | 744-751 | https://acgg.asia/db/ggdb/info/gg008 | denotes | Lewis x |
| T6 | 744-751 | https://acgg.asia/db/ggdb/info/gg003 | denotes | Lewis x |
| T7 | 911-952 | https://acgg.asia/db/ggdb/info/gg111 | denotes | beta1,6-N-acetylglucosaminyltransferase-I |
ggdb-test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 744-751 | https://acgg.asia/db/ggdb/info/gg003 | denotes | Lewis x |
| T2 | 744-751 | https://acgg.asia/db/ggdb/info/gg004 | denotes | Lewis x |
| T3 | 744-751 | https://acgg.asia/db/ggdb/info/gg005 | denotes | Lewis x |
| T4 | 744-751 | https://acgg.asia/db/ggdb/info/gg006 | denotes | Lewis x |
| T5 | 744-751 | https://acgg.asia/db/ggdb/info/gg007 | denotes | Lewis x |
| T6 | 744-751 | https://acgg.asia/db/ggdb/info/gg008 | denotes | Lewis x |
| T7 | 911-952 | https://acgg.asia/db/ggdb/info/gg111 | denotes | beta1,6-N-acetylglucosaminyltransferase-I |
glycogenes
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-GlycoGenes20190927-B_T1 | 420-423 | https://acgg.asia/db/ggdb/info/gg135 | denotes | has |
NGLY1-deficiency
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-NGLY1-deficiency-B_T1 | 528-534 | chem:24139 | denotes | GlcNAc |
Glycan-GlyCosmos
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 729-751 | Glycan | denotes | 6-sulfo sialyl Lewis x | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00672PE |
GlyCosmos-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 729-751 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | 6-sulfo sialyl Lewis x | http://www.glycoepitope.jp/epitopes/EP0014 |
GlyCosmos15-NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 958-962 | OrganismTaxon | denotes | mice | 10088 |
GlyCosmos15-CL
| Id | Subject | Object | Predicate | Lexical cue | cl_id |
|---|---|---|---|---|---|
| T1 | 15-25 | Cell | denotes | lymphocyte | http://purl.obolibrary.org/obo/CL:0000542 |
| T2 | 144-154 | Cell | denotes | lymphocyte | http://purl.obolibrary.org/obo/CL:0000542 |
| T3 | 178-188 | Cell | denotes | lymphocyte | http://purl.obolibrary.org/obo/CL:0000542 |
| T4 | 1162-1172 | Cell | denotes | lymphocyte | http://purl.obolibrary.org/obo/CL:0000542 |
GlyCosmos15-Sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-123 | Sentence | denotes | Novel sulfated lymphocyte homing receptors and their control by a Core1 extension beta 1,3-N-acetylglucosaminyltransferase. |
| T2 | 124-289 | Sentence | denotes | L-selectin mediates lymphocyte homing by facilitating lymphocyte adhesion to addressins expressed in the high endothelial venules (HEV) of secondary lymphoid organs. |
| T3 | 290-439 | Sentence | denotes | Peripheral node addressin recognized by the MECA-79 antibody is apparently part of the L-selectin ligand, but its chemical nature has been undefined. |
| T4 | 440-590 | Sentence | denotes | We now identify a sulfated extended core1 mucin-type O-glycan, Gal beta 1-->4(sulfo-->6)GlcNAc beta 1-->3Gal beta 1-->3GalNAc, as the MECA-79 epitope. |
| T5 | 591-963 | Sentence | denotes | Molecular cloning of a HEV-expressed core1-beta 1,3-N-acetylglucosaminyltransferase (Core1-beta 3GlcNAcT) enabled the construction of the 6-sulfo sialyl Lewis x on extended core1 O-glycans, recapitulating the potent L-selectin-mediated, shear-dependent adhesion observed with novel L-selectin ligands derived from core2 beta1,6-N-acetylglucosaminyltransferase-I null mice. |
| T6 | 964-1180 | Sentence | denotes | These results identify Core1-beta 3GlcNAcT and its cognate extended core1 O-glycans as essential participants in the expression of the MECA-79-positive, HEV-specific L-selectin ligands required for lymphocyte homing. |
GlyCosmos15-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 729-751 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | 6-sulfo sialyl Lewis x | http://www.glycoepitope.jp/epitopes/EP0014 |
GlyCosmos15-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 15-25 | Body_part | denotes | lymphocyte | http://purl.obolibrary.org/obo/CL_0000542 |
| T2 | 72-81 | Body_part | denotes | extension | http://purl.obolibrary.org/obo/UBERON_2000106 |
| T3 | 144-154 | Body_part | denotes | lymphocyte | http://purl.obolibrary.org/obo/CL_0000542 |
| T4 | 178-188 | Body_part | denotes | lymphocyte | http://purl.obolibrary.org/obo/CL_0000542 |
| T5 | 229-253 | Body_part | denotes | high endothelial venules | http://purl.obolibrary.org/obo/UBERON_8410037 |
| T6 | 255-258 | Body_part | denotes | HEV | http://purl.obolibrary.org/obo/UBERON_8410037 |
| T7 | 273-288 | Body_part | denotes | lymphoid organs | http://purl.obolibrary.org/obo/UBERON_0004177 |
| T8 | 301-305 | Body_part | denotes | node | http://purl.obolibrary.org/obo/UBERON_0003062 |
| T9 | 614-617 | Body_part | denotes | HEV | http://purl.obolibrary.org/obo/UBERON_8410037 |
| T10 | 1117-1120 | Body_part | denotes | HEV | http://purl.obolibrary.org/obo/UBERON_8410037 |
| T11 | 1162-1172 | Body_part | denotes | lymphocyte | http://purl.obolibrary.org/obo/CL_0000542 |
GlyCosmos15-FMA
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 15-25 | Body_part | denotes | lymphocyte | FMA:62863 |
| T2 | 144-154 | Body_part | denotes | lymphocyte | FMA:62863 |
| T3 | 178-188 | Body_part | denotes | lymphocyte | FMA:62863 |
| T4 | 246-253 | Body_part | denotes | venules | FMA:63130 |
| T5 | 263-288 | Body_part | denotes | secondary lymphoid organs | FMA:76543 |
| T6 | 1162-1172 | Body_part | denotes | lymphocyte | FMA:62863 |
GlyCosmos15-Glycan
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 66-71 | Glycan | denotes | Core1 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO |
| T2 | 476-481 | Glycan | denotes | core1 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO |
| T3 | 628-633 | Glycan | denotes | core1 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO |
| T4 | 676-681 | Glycan | denotes | Core1 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO |
| T5 | 729-751 | Glycan | denotes | 6-sulfo sialyl Lewis x | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00672PE |
| T6 | 764-769 | Glycan | denotes | core1 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO |
| T7 | 905-910 | Glycan | denotes | core2 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00033MO |
| T8 | 987-992 | Glycan | denotes | Core1 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO |
| T9 | 1032-1037 | Glycan | denotes | core1 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 958-962 | OrganismTaxon | denotes | mice | 10088 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 15-25 | Body_part | denotes | lymphocyte | http://purl.obolibrary.org/obo/CL_0000542 |
| T2 | 72-81 | Body_part | denotes | extension | http://purl.obolibrary.org/obo/UBERON_2000106 |
| T3 | 144-154 | Body_part | denotes | lymphocyte | http://purl.obolibrary.org/obo/CL_0000542 |
| T4 | 178-188 | Body_part | denotes | lymphocyte | http://purl.obolibrary.org/obo/CL_0000542 |
| T5 | 229-253 | Body_part | denotes | high endothelial venules | http://purl.obolibrary.org/obo/UBERON_8410037 |
| T6 | 255-258 | Body_part | denotes | HEV | http://purl.obolibrary.org/obo/UBERON_8410037 |
| T7 | 273-288 | Body_part | denotes | lymphoid organs | http://purl.obolibrary.org/obo/UBERON_0004177 |
| T8 | 301-305 | Body_part | denotes | node | http://purl.obolibrary.org/obo/UBERON_0003062 |
| T9 | 614-617 | Body_part | denotes | HEV | http://purl.obolibrary.org/obo/UBERON_8410037 |
| T10 | 1117-1120 | Body_part | denotes | HEV | http://purl.obolibrary.org/obo/UBERON_8410037 |
| T11 | 1162-1172 | Body_part | denotes | lymphocyte | http://purl.obolibrary.org/obo/CL_0000542 |
CL-cell
| Id | Subject | Object | Predicate | Lexical cue | cl_id |
|---|---|---|---|---|---|
| T1 | 15-25 | Cell | denotes | lymphocyte | http://purl.obolibrary.org/obo/CL:0000542 |
| T2 | 144-154 | Cell | denotes | lymphocyte | http://purl.obolibrary.org/obo/CL:0000542 |
| T3 | 178-188 | Cell | denotes | lymphocyte | http://purl.obolibrary.org/obo/CL:0000542 |
| T4 | 1162-1172 | Cell | denotes | lymphocyte | http://purl.obolibrary.org/obo/CL:0000542 |