> top > docs > PubMed:11244106 > annotations

PubMed:11244106 JSONTXT

Annnotations TAB JSON ListView MergeView

Oryza-OGER

Id Subject Object Predicate Lexical cue
T1 17-21 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T2 17-21 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T3 17-21 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T4 65-80 KARMA denotes retrotransposon
T5 65-80 http://id.nlm.nih.gov/mesh/D018626 denotes retrotransposon
T6 65-80 http://purl.obolibrary.org/obo/SO_0000180 denotes retrotransposon
T7 65-86 TOS17 denotes retrotransposon Tos17
T8 81-84 http://purl.obolibrary.org/obo/PR_P0A7I4 denotes Tos
T9 81-84 http://purl.obolibrary.org/obo/PR_Q24558 denotes Tos
T10 81-84 http://purl.obolibrary.org/obo/PR_000023590 denotes Tos
T11 81-84 http://purl.obolibrary.org/obo/UBERON_0002612 denotes Tos
T12 81-86 TOS17 denotes Tos17
T13 87-96 http://purl.obolibrary.org/obo/SO_0000667 denotes insertion
T14 111-121 http://purl.obolibrary.org/obo/CHEBI_27547 denotes zeaxanthin
T15 111-121 http://id.nlm.nih.gov/mesh/D065146 denotes zeaxanthin
T16 111-121 http://id.nlm.nih.gov/mesh/D065146 denotes zeaxanthin
T17 111-121 http://purl.bioontology.org/ontology/RXNORM/39918 denotes zeaxanthin
T18 111-131 http://id.nlm.nih.gov/mesh/C097153 denotes zeaxanthin epoxidase
T19 111-131 ABA1 denotes zeaxanthin epoxidase
T20 122-131 http://id.nlm.nih.gov/mesh/C023111 denotes epoxidase
T21 132-136 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T22 137-140 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T23 137-140 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T24 149-155 http://www.uniprot.org/uniprot/Q9AVE6 denotes ostatc
T25 149-155 TATC denotes ostatc
T26 156-160 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T27 166-170 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T28 166-170 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T29 166-170 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T30 172-177 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza
T31 172-184 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes Oryza sativa
T32 172-184 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza sativa
T33 186-201 KARMA denotes retrotransposon
T34 186-201 http://id.nlm.nih.gov/mesh/D018626 denotes retrotransposon
T35 186-201 http://purl.obolibrary.org/obo/SO_0000180 denotes retrotransposon
T36 186-207 TOS17 denotes retrotransposon Tos17
T37 202-205 http://purl.obolibrary.org/obo/PR_P0A7I4 denotes Tos
T38 202-205 http://purl.obolibrary.org/obo/PR_Q24558 denotes Tos
T39 202-205 http://purl.obolibrary.org/obo/PR_000023590 denotes Tos
T40 202-205 http://purl.obolibrary.org/obo/UBERON_0002612 denotes Tos
T41 202-207 TOS17 denotes Tos17
T42 211-214 http://web.expasy.org/cellosaurus/CVCL_Z424 denotes one
T43 211-214 http://purl.obolibrary.org/obo/CHEBI_58972 denotes one
T44 231-247 http://id.nlm.nih.gov/mesh/D018626 denotes retrotransposons
T45 251-257 http://id.nlm.nih.gov/mesh/D010944 denotes plants
T46 258-261 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T47 258-261 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T48 266-279 http://purl.obolibrary.org/obo/GO_0032196 denotes transposition
T49 266-279 http://purl.obolibrary.org/obo/SO_0000453 denotes transposition
T50 296-302 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
T51 375-379 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T52 375-379 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T53 375-379 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T54 391-397 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
T55 451-466 KARMA denotes retrotransposon
T56 451-466 http://id.nlm.nih.gov/mesh/D018626 denotes retrotransposon
T57 451-466 http://purl.obolibrary.org/obo/SO_0000180 denotes retrotransposon
T58 451-472 TOS17 denotes retrotransposon Tos17
T59 467-470 http://purl.obolibrary.org/obo/PR_P0A7I4 denotes Tos
T60 467-470 http://purl.obolibrary.org/obo/PR_Q24558 denotes Tos
T61 467-470 http://purl.obolibrary.org/obo/PR_000023590 denotes Tos
T62 467-470 http://purl.obolibrary.org/obo/UBERON_0002612 denotes Tos
T63 467-472 TOS17 denotes Tos17
T64 490-501 http://purl.obolibrary.org/obo/SO_0001522 denotes insertional
T65 502-509 http://purl.obolibrary.org/obo/CHEBI_25435 denotes mutagen
T66 502-509 http://purl.obolibrary.org/obo/SO_0001148 denotes mutagen
T67 510-513 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T68 510-513 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T69 536-540 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T70 541-544 http://purl.obolibrary.org/obo/PR_Q9NZC7 denotes for
T71 541-544 http://purl.obolibrary.org/obo/PR_000001036 denotes for
T72 545-552 http://purl.obolibrary.org/obo/SO_0001030 denotes forward
T73 580-584 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T74 638-647 http://purl.obolibrary.org/obo/SO_0000667 denotes insertion
T75 651-654 http://purl.obolibrary.org/obo/PR_P0A7I4 denotes Tos
T76 651-654 http://purl.obolibrary.org/obo/PR_Q24558 denotes Tos
T77 651-654 http://purl.obolibrary.org/obo/PR_000023590 denotes Tos
T78 651-654 http://purl.obolibrary.org/obo/UBERON_0002612 denotes Tos
T79 651-656 TOS17 denotes Tos17
T80 658-664 ABA1 denotes Osaba1
T81 658-664 http://www.uniprot.org/uniprot/Q0JCU7 denotes Osaba1
T82 729-742 http://purl.obolibrary.org/obo/CHEBI_28937 denotes abscisic acid
T83 729-742 http://purl.obolibrary.org/obo/CHEBI_22152 denotes abscisic acid
T84 729-742 ASR1 denotes abscisic acid
T85 729-742 http://purl.obolibrary.org/obo/CHEBI_2365 denotes abscisic acid
T86 729-742 http://purl.obolibrary.org/obo/CHEBI_62431 denotes abscisic acid
T87 729-742 ASR5 denotes abscisic acid
T88 729-742 http://id.nlm.nih.gov/mesh/D000040 denotes abscisic acid
T89 729-742 http://id.nlm.nih.gov/mesh/D000040 denotes abscisic acid
T90 738-742 http://purl.obolibrary.org/obo/CHEBI_37527 denotes acid
T91 749-752 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T92 749-752 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T93 850-861 http://purl.obolibrary.org/obo/MOP_0000671 denotes epoxidation
T94 865-875 http://purl.obolibrary.org/obo/CHEBI_27547 denotes zeaxanthin
T95 865-875 http://id.nlm.nih.gov/mesh/D065146 denotes zeaxanthin
T96 865-875 http://id.nlm.nih.gov/mesh/D065146 denotes zeaxanthin
T97 865-875 http://purl.bioontology.org/ontology/RXNORM/39918 denotes zeaxanthin
T98 884-889 http://www.ncbi.nlm.nih.gov/taxonomy/32644 denotes other
T99 890-894 http://purl.obolibrary.org/obo/UBERON_0002398 denotes hand
T100 890-894 http://purl.obolibrary.org/obo/PR_000027804 denotes hand
T101 896-902 http://www.uniprot.org/uniprot/Q9AVE6 denotes Ostatc
T102 896-902 TATC denotes Ostatc
T103 969-972 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T104 969-972 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T105 992-1005 http://purl.obolibrary.org/obo/CHEBI_28937 denotes abscisic acid
T106 992-1005 http://purl.obolibrary.org/obo/CHEBI_22152 denotes abscisic acid
T107 992-1005 ASR1 denotes abscisic acid
T108 992-1005 http://purl.obolibrary.org/obo/CHEBI_2365 denotes abscisic acid
T109 992-1005 http://purl.obolibrary.org/obo/CHEBI_62431 denotes abscisic acid
T110 992-1005 ASR5 denotes abscisic acid
T111 992-1005 http://id.nlm.nih.gov/mesh/D000040 denotes abscisic acid
T112 992-1005 http://id.nlm.nih.gov/mesh/D000040 denotes abscisic acid
T113 1001-1005 http://purl.obolibrary.org/obo/CHEBI_37527 denotes acid
T114 1035-1040 http://purl.obolibrary.org/obo/CHEBI_46882 denotes amino
T115 1035-1046 http://purl.bioontology.org/ontology/RXNORM/1873122 denotes amino acids
T116 1035-1046 http://id.nlm.nih.gov/mesh/D000596 denotes amino acids
T117 1035-1046 http://id.nlm.nih.gov/mesh/D000596 denotes amino acids
T118 1035-1046 http://purl.obolibrary.org/obo/CHEBI_33709 denotes amino acids
T119 1035-1046 http://purl.obolibrary.org/obo/CHEBI_33704 denotes amino acids
T120 1041-1046 http://id.nlm.nih.gov/mesh/D000143 denotes acids
T121 1041-1046 http://purl.obolibrary.org/obo/CHEBI_37527 denotes acids
T122 1041-1046 http://id.nlm.nih.gov/mesh/D000143 denotes acids
T123 1073-1079 ABA1 denotes Osaba1
T124 1073-1079 http://www.uniprot.org/uniprot/Q0JCU7 denotes Osaba1
T125 1080-1083 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T126 1080-1083 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T127 1084-1090 http://www.uniprot.org/uniprot/Q9AVE6 denotes Ostatc
T128 1084-1090 TATC denotes Ostatc
T129 1137-1147 http://purl.obolibrary.org/obo/CHEBI_27547 denotes zeaxanthin
T130 1137-1147 http://id.nlm.nih.gov/mesh/D065146 denotes zeaxanthin
T131 1137-1147 http://id.nlm.nih.gov/mesh/D065146 denotes zeaxanthin
T132 1137-1147 http://purl.bioontology.org/ontology/RXNORM/39918 denotes zeaxanthin
T133 1137-1157 http://id.nlm.nih.gov/mesh/C097153 denotes zeaxanthin epoxidase
T134 1137-1157 ABA1 denotes zeaxanthin epoxidase
T135 1148-1157 http://id.nlm.nih.gov/mesh/C023111 denotes epoxidase
T136 1172-1177 http://www.ncbi.nlm.nih.gov/taxonomy/32644 denotes other
T137 1178-1183 http://id.nlm.nih.gov/mesh/D010944 denotes plant
T138 1192-1195 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T139 1192-1195 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T140 1211-1214 http://purl.obolibrary.org/obo/CHEBI_32745 denotes Sec
T141 1211-1214 http://purl.obolibrary.org/obo/SO_0001455 denotes Sec
T142 1211-1214 http://purl.obolibrary.org/obo/CHEBI_32746 denotes Sec
T143 1211-1214 http://purl.obolibrary.org/obo/CHEBI_30000 denotes Sec
T144 1211-1214 http://purl.obolibrary.org/obo/PR_P17257 denotes Sec
T145 1211-1214 http://purl.obolibrary.org/obo/CHEBI_30003 denotes Sec
T146 1211-1214 http://web.expasy.org/cellosaurus/CVCL_E825 denotes Sec
T147 1211-1214 http://purl.obolibrary.org/obo/PR_Q9M8Y0 denotes Sec
T148 1239-1243 http://purl.obolibrary.org/obo/PR_P69423 denotes TATC
T149 1239-1243 http://purl.obolibrary.org/obo/PR_000024030 denotes TATC
T150 1239-1243 TATC denotes TATC
T151 1239-1243 http://purl.obolibrary.org/obo/PR_Q9SJV5 denotes TATC
T152 1244-1251 http://purl.obolibrary.org/obo/CHEBI_11122 denotes protein
T153 1244-1251 http://purl.obolibrary.org/obo/SO_0000104 denotes protein
T154 1244-1251 http://purl.obolibrary.org/obo/PR_000000001 denotes protein
T155 1244-1251 http://purl.obolibrary.org/obo/CHEBI_16541 denotes protein
T156 1244-1251 http://purl.obolibrary.org/obo/GO_0003675 denotes protein
T157 1244-1251 http://purl.obolibrary.org/obo/CHEBI_36080 denotes protein
T158 1267-1271 http://purl.obolibrary.org/obo/PR_000024065 denotes This
T159 1267-1271 http://purl.obolibrary.org/obo/PR_O32583 denotes This
T160 1296-1306 http://purl.obolibrary.org/obo/SO_0000101 denotes transposon
T161 1318-1322 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T162 1318-1322 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T163 1318-1322 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_5 353-371 xzyao:15097 denotes viviparous mutants
M_6 81-86 hunflair:NA:Gene denotes Tos17
M_7 202-207 hunflair:NA:Gene denotes Tos17
M_8 467-472 hunflair:NA:Gene denotes Tos17
M_9 651-656 hunflair:NA:Gene denotes Tos17
M_10 172-184 hunflair:NA:Species denotes Oryza sativa
M_0 729-742 funRiceGene:339, xzyao:8823 denotes abscisic acid
M_1 992-1005 funRiceGene:339, xzyao:8823 denotes abscisic acid
M_2 959-968 WTO:0000005 denotes phenotype
M_3 725-748 xzyao:6508 denotes low abscisic acid level
M_4 729-748 xzyao:10520 denotes abscisic acid level
M_11 729-742 hunflair:NA:Chemical denotes abscisic acid
M_12 992-1005 hunflair:NA:Chemical denotes abscisic acid
M_13 1211-1214 hunflair:NA:Gene denotes Sec
M_14 111-131 hunflair:NA:Gene denotes zeaxanthin epoxidase
M_15 1137-1157 hunflair:NA:Gene denotes zeaxanthin epoxidase
M_16 17-21 hunflair:NA:Species denotes rice
M_17 166-170 hunflair:NA:Species denotes rice
M_18 375-379 hunflair:NA:Species denotes rice
M_19 1318-1322 hunflair:NA:Species denotes rice
M_20 1211-1214 hunflair:NA:Chemical denotes Sec
M_21 1201-1210 hunflair:NA:Species denotes bacterial
M_22 1227-1251 hunflair:NA:Gene denotes translocase TATC protein
M_23 658-664 hunflair:NA:Gene denotes Osaba1
M_24 1073-1079 hunflair:NA:Gene denotes Osaba1
M_25 1035-1046 hunflair:NA:Chemical denotes amino acids
M_26 896-902 hunflair:NA:Gene denotes Ostatc
M_27 1084-1090 hunflair:NA:Gene denotes Ostatc
M_28 111-121 hunflair:NA:Chemical denotes zeaxanthin
M_29 865-875 hunflair:NA:Chemical denotes zeaxanthin
M_30 1137-1147 hunflair:NA:Chemical denotes zeaxanthin
M_31 149-155 hunflair:NA:Gene denotes ostatc
M_32 172-184 pubtator:4530:Species denotes Oryza sativa
M_33 729-742 pubtator:MESH:D000040:Chemical denotes abscisic acid
M_34 992-1005 pubtator:MESH:D000040:Chemical denotes abscisic acid
M_35 111-121 pubtator:MESH:D065146:Chemical denotes zeaxanthin
M_36 865-875 pubtator:MESH:D065146:Chemical denotes zeaxanthin
M_37 1137-1147 pubtator:MESH:D065146:Chemical denotes zeaxanthin
M_38 17-21 pubtator:4530:Species denotes rice
M_39 166-170 pubtator:4530:Species denotes rice
M_40 375-379 pubtator:4530:Species denotes rice
M_41 1318-1322 pubtator:4530:Species denotes rice

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 65-86 http://identifiers.org/oryzabase.gene/2982 denotes retrotransposon Tos17
T2 111-131 http://identifiers.org/oryzabase.gene/6080 denotes zeaxanthin epoxidase
T3 149-155 http://identifiers.org/oryzabase.gene/6298 denotes ostatc
T4 186-207 http://identifiers.org/oryzabase.gene/2982 denotes retrotransposon Tos17
T5 451-472 http://identifiers.org/oryzabase.gene/2982 denotes retrotransposon Tos17
T6 651-656 http://identifiers.org/oryzabase.gene/2982 denotes Tos17
T7 658-664 http://identifiers.org/oryzabase.gene/6080 denotes Osaba1
T8 729-742 http://identifiers.org/oryzabase.gene/8408 denotes abscisic acid
T9 992-1005 http://identifiers.org/oryzabase.gene/8408 denotes abscisic acid
T10 1073-1079 http://identifiers.org/oryzabase.gene/6080 denotes Osaba1
T11 1137-1157 http://identifiers.org/oryzabase.gene/6080 denotes zeaxanthin epoxidase
T12 1239-1243 http://identifiers.org/oryzabase.gene/6298 denotes TATC
T65726 111-131 http://identifiers.org/ricegap/LOC_Os04g37619 denotes zeaxanthin epoxidase
T36174 149-155 http://identifiers.org/ricegap/LOC_Os01g31680 denotes ostatc
T57807 658-664 http://identifiers.org/ricegap/LOC_Os04g37619 denotes Osaba1
T94051 729-742 http://identifiers.org/ricegap/LOC_Os11g06720 denotes abscisic acid
T61842 896-902 http://identifiers.org/ricegap/LOC_Os01g31680 denotes Ostatc
T31525 992-1005 http://identifiers.org/ricegap/LOC_Os11g06720 denotes abscisic acid
T35844 1073-1079 http://identifiers.org/ricegap/LOC_Os04g37619 denotes Osaba1
T47215 1084-1090 http://identifiers.org/ricegap/LOC_Os01g31680 denotes Ostatc
T63745 1137-1157 http://identifiers.org/ricegap/LOC_Os04g37619 denotes zeaxanthin epoxidase
T6039 1239-1243 http://identifiers.org/ricegap/LOC_Os01g31680 denotes TATC
T51863 111-131 http://identifiers.org/rapdb.locus/Os04g0448900 denotes zeaxanthin epoxidase
T44678 149-155 http://identifiers.org/rapdb.locus/Os01g0501700 denotes ostatc
T85638 658-664 http://identifiers.org/rapdb.locus/Os04g0448900 denotes Osaba1
T32944 729-742 http://identifiers.org/rapdb.locus/Os11g0167800 denotes abscisic acid
T93277 896-902 http://identifiers.org/rapdb.locus/Os01g0501700 denotes Ostatc
T15499 992-1005 http://identifiers.org/rapdb.locus/Os11g0167800 denotes abscisic acid
T85582 1073-1079 http://identifiers.org/rapdb.locus/Os04g0448900 denotes Osaba1
T49128 1084-1090 http://identifiers.org/rapdb.locus/Os01g0501700 denotes Ostatc
T33911 1137-1157 http://identifiers.org/rapdb.locus/Os04g0448900 denotes zeaxanthin epoxidase
T38826 1239-1243 http://identifiers.org/rapdb.locus/Os01g0501700 denotes TATC
T45284 111-131 http://identifiers.org/uniprot/Q0JCU7 denotes zeaxanthin epoxidase
T23117 658-664 http://identifiers.org/uniprot/Q0JCU7 denotes Osaba1
T24298 729-742 http://identifiers.org/uniprot/Q53JF7 denotes abscisic acid
T14596 992-1005 http://identifiers.org/uniprot/Q53JF7 denotes abscisic acid
T2391 1073-1079 http://identifiers.org/uniprot/Q0JCU7 denotes Osaba1
T71629 1137-1157 http://identifiers.org/uniprot/Q0JCU7 denotes zeaxanthin epoxidase
T86142 1239-1243 http://identifiers.org/uniprot/Q94G17 denotes TATC
M_0 111-121 hunflair:NA:Chemical denotes zeaxanthin
M_1 865-875 hunflair:NA:Chemical denotes zeaxanthin
M_2 1137-1147 hunflair:NA:Chemical denotes zeaxanthin
M_3 111-131 hunflair:NA:Gene denotes zeaxanthin epoxidase
M_4 1137-1157 hunflair:NA:Gene denotes zeaxanthin epoxidase
M_5 896-902 hunflair:NA:Gene denotes Ostatc
M_6 1084-1090 hunflair:NA:Gene denotes Ostatc
M_7 149-155 hunflair:NA:Gene denotes ostatc
M_8 172-184 hunflair:NA:Species denotes Oryza sativa
M_9 1211-1214 hunflair:NA:Chemical denotes Sec
M_10 1211-1214 hunflair:NA:Gene denotes Sec
M_11 1201-1210 hunflair:NA:Species denotes bacterial
M_12 1035-1046 hunflair:NA:Chemical denotes amino acids
M_13 1227-1251 hunflair:NA:Gene denotes translocase TATC protein
M_14 729-742 hunflair:NA:Chemical denotes abscisic acid
M_15 992-1005 hunflair:NA:Chemical denotes abscisic acid
M_16 17-21 hunflair:NA:Species denotes rice
M_17 166-170 hunflair:NA:Species denotes rice
M_18 375-379 hunflair:NA:Species denotes rice
M_19 1318-1322 hunflair:NA:Species denotes rice
M_20 81-86 hunflair:NA:Gene denotes Tos17
M_21 202-207 hunflair:NA:Gene denotes Tos17
M_22 467-472 hunflair:NA:Gene denotes Tos17
M_23 651-656 hunflair:NA:Gene denotes Tos17
M_24 658-664 hunflair:NA:Gene denotes Osaba1
M_25 1073-1079 hunflair:NA:Gene denotes Osaba1

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 65-80 http://identifiers.org/oryzabase.gene/2983 denotes retrotransposon
T2 186-201 http://identifiers.org/oryzabase.gene/2983 denotes retrotransposon
T3 451-466 http://identifiers.org/oryzabase.gene/2983 denotes retrotransposon

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 81-86 http://identifiers.org/oryzabase.gene/2982 denotes Tos17
T2 202-207 http://identifiers.org/oryzabase.gene/2982 denotes Tos17
T3 467-472 http://identifiers.org/oryzabase.gene/2982 denotes Tos17
T4 651-656 http://identifiers.org/oryzabase.gene/2982 denotes Tos17
T5 658-664 http://identifiers.org/oryzabase.gene/6080 denotes Osaba1
T6 1073-1079 http://identifiers.org/oryzabase.gene/6080 denotes Osaba1
T7 1239-1243 http://identifiers.org/oryzabase.gene/6298 denotes TATC
T83369 658-664 http://identifiers.org/rapdb.locus/Os04g0448900 denotes Osaba1
T85032 1073-1079 http://identifiers.org/rapdb.locus/Os04g0448900 denotes Osaba1
T76503 1239-1243 http://identifiers.org/rapdb.locus/Os01g0501700 denotes TATC

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 725-748 cand:PECO:0007105-abscisic acid exposure denotes low abscisic acid level
M_1 725-748 cand:TO:0000615-abscisic acid sensitivity denotes low abscisic acid level
M_2 725-748 cand:TO:0000166-gibberellic acid sensitivity denotes low abscisic acid level
M_3 725-748 cand:PECO:0007069-gibberellic acid exposure denotes low abscisic acid level
M_4 725-748 cand:PECO:0007204-1-naphthaleneacetic acid exposure denotes low abscisic acid level
M_5 725-748 cand:PECO:0007187-salicylic acid exposure denotes low abscisic acid level
M_6 725-748 cand:funRiceGene:122-abscisic acid denotes low abscisic acid level
M_7 725-748 cand:PO:0006501-leaf abscission zone denotes low abscisic acid level
M_8 725-748 cand:TO:0002667-abscisic acid content denotes low abscisic acid level
M_9 948-968 cand:WTO:0000370-yellow pigment content of seed denotes pale green phenotype
M_10 948-968 cand:WTO:0000368-yellow mosaic denotes pale green phenotype
M_11 948-968 cand:TO:0000292-yellow dwarf disease resistance denotes pale green phenotype
M_12 948-968 cand:TO:0000885-petiolule color denotes pale green phenotype
M_13 948-968 cand:TO:0000494-pigment content trait denotes pale green phenotype
M_14 948-968 cand:TO:0011001-leaf lamina color distribution denotes pale green phenotype
M_15 948-968 cand:PECO:0007548-Janus green B exposure denotes pale green phenotype
M_16 948-968 cand:WTO:0000231-hard grain texture denotes pale green phenotype
M_17 948-968 cand:WTO:0000005-phenotype denotes pale green phenotype
M_18 948-968 cand:TO:0000106-male sterility type denotes pale green phenotype
M_19 948-968 cand:TO:0000778-peduncle type denotes pale green phenotype
M_20 658-664 GeneID:RAPID:Os04g0448900MSUID:LOC_Os04g37619GraID:GR:0101186 denotes Osaba1
M_21 896-902 GeneID:NA denotes Ostatc
T2503 172-184 xzyao:1553 denotes Oryza sativa
T71853 1178-1191 xzyao:45052 denotes plant species
T82166 576-584 xzyao:38844 denotes the gene
T63618 704-713 WTO:0000005 denotes phenotype
T98731 923-932 WTO:0000005 denotes phenotype
T23394 959-968 WTO:0000005 denotes phenotype
T69116 1035-1046 xzyao:8656 denotes amino acids
T56073 729-742 funRiceGene:339, xzyao:16388 denotes abscisic acid
T91370 992-1005 funRiceGene:339, xzyao:16388 denotes abscisic acid
T24183 948-958 xzyao:37609 denotes pale green
T10207 725-748 xzyao:30207 denotes low abscisic acid level
T58186 799-806 WTO:0000218, funRiceGene:356 denotes drought
T39520 1018-1025 WTO:0000218, funRiceGene:356 denotes drought
T44993 111-131 xzyao:17589 denotes zeaxanthin epoxidase
T85836 1137-1157 xzyao:17589 denotes zeaxanthin epoxidase
T28678 296-310 xzyao:27138 denotes tissue culture
T84367 391-405 xzyao:27138 denotes tissue culture
T76935 973-988 xzyao:41126 denotes slight increase
T27759 111-121 hunflair:NA:Chemical denotes zeaxanthin
T24804 865-875 hunflair:NA:Chemical denotes zeaxanthin
T6703 1137-1147 hunflair:NA:Chemical denotes zeaxanthin
T95998 149-155 hunflair:NA:Gene denotes ostatc
M_22 81-86 hunflair:NA:Gene denotes Tos17
M_23 202-207 hunflair:NA:Gene denotes Tos17
M_24 467-472 hunflair:NA:Gene denotes Tos17
M_25 651-656 hunflair:NA:Gene denotes Tos17
M_26 1035-1046 hunflair:NA:Chemical denotes amino acids
M_27 896-902 hunflair:NA:Gene denotes Ostatc
M_28 1084-1090 hunflair:NA:Gene denotes Ostatc
M_29 172-184 hunflair:NA:Species denotes Oryza sativa
M_30 111-131 hunflair:NA:Gene denotes zeaxanthin epoxidase
M_31 1137-1157 hunflair:NA:Gene denotes zeaxanthin epoxidase
M_32 1201-1210 hunflair:NA:Species denotes bacterial
M_33 729-742 hunflair:NA:Chemical denotes abscisic acid
M_34 992-1005 hunflair:NA:Chemical denotes abscisic acid
M_35 1227-1251 hunflair:NA:Gene denotes translocase TATC protein
M_36 17-21 hunflair:NA:Species denotes rice
M_37 166-170 hunflair:NA:Species denotes rice
M_38 375-379 hunflair:NA:Species denotes rice
M_39 1318-1322 hunflair:NA:Species denotes rice
M_40 658-664 hunflair:NA:Gene denotes Osaba1
M_41 1073-1079 hunflair:NA:Gene denotes Osaba1
M_42 1211-1214 hunflair:NA:Gene denotes Sec
M_43 1211-1214 hunflair:NA:Chemical denotes Sec
M_44 111-121 pubtator:MESH:D065146:Chemical denotes zeaxanthin
M_45 865-875 pubtator:MESH:D065146:Chemical denotes zeaxanthin
M_46 1137-1147 pubtator:MESH:D065146:Chemical denotes zeaxanthin
M_47 729-742 pubtator:MESH:D000040:Chemical denotes abscisic acid
M_48 992-1005 pubtator:MESH:D000040:Chemical denotes abscisic acid
M_49 172-184 pubtator:4530:Species denotes Oryza sativa
M_50 17-21 pubtator:4530:Species denotes rice
M_51 166-170 pubtator:4530:Species denotes rice
M_52 375-379 pubtator:4530:Species denotes rice
M_53 1318-1322 pubtator:4530:Species denotes rice

PMID_GLOBAL

Id Subject Object Predicate Lexical cue mondo_id
T1 948-952 DiseaseOrPhenotypicFeature denotes pale 0015595

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 111-121 hunflair:NA:Chemical denotes zeaxanthin
M_1 865-875 hunflair:NA:Chemical denotes zeaxanthin
M_2 1137-1147 hunflair:NA:Chemical denotes zeaxanthin
M_3 111-131 hunflair:NA:Gene denotes zeaxanthin epoxidase
M_4 1137-1157 hunflair:NA:Gene denotes zeaxanthin epoxidase
M_5 896-902 hunflair:NA:Gene denotes Ostatc
M_6 1084-1090 hunflair:NA:Gene denotes Ostatc
M_7 149-155 hunflair:NA:Gene denotes ostatc
M_8 172-184 hunflair:NA:Species denotes Oryza sativa
M_9 1211-1214 hunflair:NA:Chemical denotes Sec
M_10 1211-1214 hunflair:NA:Gene denotes Sec
M_11 1201-1210 hunflair:NA:Species denotes bacterial
M_12 1035-1046 hunflair:NA:Chemical denotes amino acids
M_13 1227-1251 hunflair:NA:Gene denotes translocase TATC protein
M_14 729-742 hunflair:NA:Chemical denotes abscisic acid
M_15 992-1005 hunflair:NA:Chemical denotes abscisic acid
M_16 17-21 hunflair:NA:Species denotes rice
M_17 166-170 hunflair:NA:Species denotes rice
M_18 375-379 hunflair:NA:Species denotes rice
M_19 1318-1322 hunflair:NA:Species denotes rice
M_20 81-86 hunflair:NA:Gene denotes Tos17
M_21 202-207 hunflair:NA:Gene denotes Tos17
M_22 467-472 hunflair:NA:Gene denotes Tos17
M_23 651-656 hunflair:NA:Gene denotes Tos17
M_24 658-664 hunflair:NA:Gene denotes Osaba1
M_25 1073-1079 hunflair:NA:Gene denotes Osaba1

OryzaGP

Id Subject Object Predicate Lexical cue
T1 65-80 gene denotes retrotransposon
T2 186-201 gene denotes retrotransposon
T3 451-466 gene denotes retrotransposon
T4 658-664 gene denotes Osaba1
T5 896-903 gene denotes Ostatc,
T6 1073-1079 gene denotes Osaba1
T7 1084-1090 gene denotes Ostatc
T8 1137-1157 gene denotes zeaxanthin epoxidase

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-97 Sentence denotes Screening of the rice viviparous mutants generated by endogenous retrotransposon Tos17 insertion.
T2 98-161 Sentence denotes Tagging of a zeaxanthin epoxidase gene and a novel ostatc gene.
T3 162-311 Sentence denotes The rice (Oryza sativa) retrotransposon Tos17 is one of a few active retrotransposons in plants and its transposition is activated by tissue culture.
T4 312-594 Sentence denotes Here, we present the characterization of viviparous mutants of rice induced by tissue culture to demonstrate the feasibility of the use of retrotransposon Tos17 as an endogenous insertional mutagen and cloning of the tagged gene for forward genetics in unraveling the gene function.
T5 595-657 Sentence denotes Two mutants were shown to be caused by the insertion of Tos17.
T6 658-807 Sentence denotes Osaba1, a strong viviparous mutant with wilty phenotype, displayed low abscisic acid level and almost no further increase in its levels upon drought.
T7 808-876 Sentence denotes The mutant is shown to be impaired in the epoxidation of zeaxanthin.
T8 877-1026 Sentence denotes On the other hand, Ostatc, a mutant with weak phenotype, exhibited the pale green phenotype and slight increase in abscisic acid levels upon drought.
T9 1027-1266 Sentence denotes Deduced amino acids of the causative genes of Osaba1 and Ostatc manifested a significantly high homology with zeaxanthin epoxidase isolated from other plant species and with bacterial Sec-independent translocase TATC protein, respectively.
T10 1267-1323 Sentence denotes This is the first example of transposon tagging in rice.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-97 Sentence denotes Screening of the rice viviparous mutants generated by endogenous retrotransposon Tos17 insertion.
T2 98-161 Sentence denotes Tagging of a zeaxanthin epoxidase gene and a novel ostatc gene.
T3 162-311 Sentence denotes The rice (Oryza sativa) retrotransposon Tos17 is one of a few active retrotransposons in plants and its transposition is activated by tissue culture.
T4 312-594 Sentence denotes Here, we present the characterization of viviparous mutants of rice induced by tissue culture to demonstrate the feasibility of the use of retrotransposon Tos17 as an endogenous insertional mutagen and cloning of the tagged gene for forward genetics in unraveling the gene function.
T5 595-657 Sentence denotes Two mutants were shown to be caused by the insertion of Tos17.
T6 658-807 Sentence denotes Osaba1, a strong viviparous mutant with wilty phenotype, displayed low abscisic acid level and almost no further increase in its levels upon drought.
T7 808-876 Sentence denotes The mutant is shown to be impaired in the epoxidation of zeaxanthin.
T8 877-1026 Sentence denotes On the other hand, Ostatc, a mutant with weak phenotype, exhibited the pale green phenotype and slight increase in abscisic acid levels upon drought.
T9 1027-1266 Sentence denotes Deduced amino acids of the causative genes of Osaba1 and Ostatc manifested a significantly high homology with zeaxanthin epoxidase isolated from other plant species and with bacterial Sec-independent translocase TATC protein, respectively.
T10 1267-1323 Sentence denotes This is the first example of transposon tagging in rice.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-97 Sentence denotes Screening of the rice viviparous mutants generated by endogenous retrotransposon Tos17 insertion.
T2 98-161 Sentence denotes Tagging of a zeaxanthin epoxidase gene and a novel ostatc gene.
T3 162-311 Sentence denotes The rice (Oryza sativa) retrotransposon Tos17 is one of a few active retrotransposons in plants and its transposition is activated by tissue culture.
T4 312-594 Sentence denotes Here, we present the characterization of viviparous mutants of rice induced by tissue culture to demonstrate the feasibility of the use of retrotransposon Tos17 as an endogenous insertional mutagen and cloning of the tagged gene for forward genetics in unraveling the gene function.
T5 595-657 Sentence denotes Two mutants were shown to be caused by the insertion of Tos17.
T6 658-807 Sentence denotes Osaba1, a strong viviparous mutant with wilty phenotype, displayed low abscisic acid level and almost no further increase in its levels upon drought.
T7 808-876 Sentence denotes The mutant is shown to be impaired in the epoxidation of zeaxanthin.
T8 877-1026 Sentence denotes On the other hand, Ostatc, a mutant with weak phenotype, exhibited the pale green phenotype and slight increase in abscisic acid levels upon drought.
T9 1027-1266 Sentence denotes Deduced amino acids of the causative genes of Osaba1 and Ostatc manifested a significantly high homology with zeaxanthin epoxidase isolated from other plant species and with bacterial Sec-independent translocase TATC protein, respectively.
T10 1267-1323 Sentence denotes This is the first example of transposon tagging in rice.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-97 Sentence denotes Screening of the rice viviparous mutants generated by endogenous retrotransposon Tos17 insertion.
T2 98-161 Sentence denotes Tagging of a zeaxanthin epoxidase gene and a novel ostatc gene.
T3 162-311 Sentence denotes The rice (Oryza sativa) retrotransposon Tos17 is one of a few active retrotransposons in plants and its transposition is activated by tissue culture.
T4 312-594 Sentence denotes Here, we present the characterization of viviparous mutants of rice induced by tissue culture to demonstrate the feasibility of the use of retrotransposon Tos17 as an endogenous insertional mutagen and cloning of the tagged gene for forward genetics in unraveling the gene function.
T5 595-657 Sentence denotes Two mutants were shown to be caused by the insertion of Tos17.
T6 658-807 Sentence denotes Osaba1, a strong viviparous mutant with wilty phenotype, displayed low abscisic acid level and almost no further increase in its levels upon drought.
T7 808-876 Sentence denotes The mutant is shown to be impaired in the epoxidation of zeaxanthin.
T8 877-1026 Sentence denotes On the other hand, Ostatc, a mutant with weak phenotype, exhibited the pale green phenotype and slight increase in abscisic acid levels upon drought.
T9 1027-1266 Sentence denotes Deduced amino acids of the causative genes of Osaba1 and Ostatc manifested a significantly high homology with zeaxanthin epoxidase isolated from other plant species and with bacterial Sec-independent translocase TATC protein, respectively.
T10 1267-1323 Sentence denotes This is the first example of transposon tagging in rice.