> top > docs > PubMed:11030742 > annotations

PubMed:11030742 JSONTXT

Annnotations TAB JSON ListView MergeView

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-113 Sentence denotes Molecular dynamics simulation of human prion protein including both N-linked oligosaccharides and the GPI anchor.
TextSentencer_T2 114-327 Sentence denotes Although glycosylation appears to protect prion protein (PrP(C)) from the conformational transition to the disease-associated scrapie form (PrP(Sc)), available NMR structures are for non-glycosylated PrP(C), only.
TextSentencer_T3 328-665 Sentence denotes To investigate the influence of both the two N-linked glycans, Asn181 and Asn197, and of the GPI anchor attached to Ser230, on the structural, dynamical and electrostatic behavior of PrP, we have undertaken molecular dynamics simulations on the C-terminal region of human prion protein HU:PrP(90-230), with and without the three glycans.
TextSentencer_T4 666-820 Sentence denotes The simulations used the AMBER94 force field in a periodic box model with explicit water molecules, considering all long-range electrostatic interactions.
TextSentencer_T5 821-1175 Sentence denotes The results suggest the structured part of the protein, HU:PrP(127-227) is stabilized overall from addition of the glycans, specifically by extensions of Helix-B and Helix-C and reduced flexibility of the linking turn containing Asn197, although some regions such as residues in the turn (165-170) between Strand-B and Helix-B have increased flexibility.
TextSentencer_T6 1176-1337 Sentence denotes The stabilization appears indirect, by reducing the mobility of the surrounding water molecules, and not from specific interactions such as H bonds or ion pairs.
TextSentencer_T7 1338-1568 Sentence denotes The results are consistent with glycosylation at Asn197 having a stabilizing role, while that at Asn181, in a region with already stable secondary structure, having a more functional role, in agreement with literature suggestions.
TextSentencer_T8 1569-1902 Sentence denotes Due to three negatively charged SiaLe(x) groups per N-glycan, the surface electrostatic properties change to a negative electrostatic field covering most of the C-terminal part, including the surface of Helix-B and Helix-C, while the positively charged N-terminal part PrP(90-126) of undefined structure creates a positive potential.
TextSentencer_T9 1903-2080 Sentence denotes The unusual hydrophilic Helix-A (144-152) is not covered by either of these dominant electrostatic fields, and modeling shows it could readily dimerize in anti parallel fashion.
TextSentencer_T10 2081-2367 Sentence denotes In combination with separate simulations of the GPI anchor in a membrane model, the results show the GPI anchor is highly flexible and would maintain the protein at a distance between 9 and 13 A from the membrane surface, with little influence on its structure or orientational freedom.
T1 0-113 Sentence denotes Molecular dynamics simulation of human prion protein including both N-linked oligosaccharides and the GPI anchor.
T2 114-327 Sentence denotes Although glycosylation appears to protect prion protein (PrP(C)) from the conformational transition to the disease-associated scrapie form (PrP(Sc)), available NMR structures are for non-glycosylated PrP(C), only.
T3 328-665 Sentence denotes To investigate the influence of both the two N-linked glycans, Asn181 and Asn197, and of the GPI anchor attached to Ser230, on the structural, dynamical and electrostatic behavior of PrP, we have undertaken molecular dynamics simulations on the C-terminal region of human prion protein HU:PrP(90-230), with and without the three glycans.
T4 666-820 Sentence denotes The simulations used the AMBER94 force field in a periodic box model with explicit water molecules, considering all long-range electrostatic interactions.
T5 821-1175 Sentence denotes The results suggest the structured part of the protein, HU:PrP(127-227) is stabilized overall from addition of the glycans, specifically by extensions of Helix-B and Helix-C and reduced flexibility of the linking turn containing Asn197, although some regions such as residues in the turn (165-170) between Strand-B and Helix-B have increased flexibility.
T6 1176-1337 Sentence denotes The stabilization appears indirect, by reducing the mobility of the surrounding water molecules, and not from specific interactions such as H bonds or ion pairs.
T7 1338-1568 Sentence denotes The results are consistent with glycosylation at Asn197 having a stabilizing role, while that at Asn181, in a region with already stable secondary structure, having a more functional role, in agreement with literature suggestions.
T8 1569-1902 Sentence denotes Due to three negatively charged SiaLe(x) groups per N-glycan, the surface electrostatic properties change to a negative electrostatic field covering most of the C-terminal part, including the surface of Helix-B and Helix-C, while the positively charged N-terminal part PrP(90-126) of undefined structure creates a positive potential.
T9 1903-2080 Sentence denotes The unusual hydrophilic Helix-A (144-152) is not covered by either of these dominant electrostatic fields, and modeling shows it could readily dimerize in anti parallel fashion.
T10 2081-2367 Sentence denotes In combination with separate simulations of the GPI anchor in a membrane model, the results show the GPI anchor is highly flexible and would maintain the protein at a distance between 9 and 13 A from the membrane surface, with little influence on its structure or orientational freedom.
T1 0-113 Sentence denotes Molecular dynamics simulation of human prion protein including both N-linked oligosaccharides and the GPI anchor.
T2 114-327 Sentence denotes Although glycosylation appears to protect prion protein (PrP(C)) from the conformational transition to the disease-associated scrapie form (PrP(Sc)), available NMR structures are for non-glycosylated PrP(C), only.
T3 328-665 Sentence denotes To investigate the influence of both the two N-linked glycans, Asn181 and Asn197, and of the GPI anchor attached to Ser230, on the structural, dynamical and electrostatic behavior of PrP, we have undertaken molecular dynamics simulations on the C-terminal region of human prion protein HU:PrP(90-230), with and without the three glycans.
T4 666-820 Sentence denotes The simulations used the AMBER94 force field in a periodic box model with explicit water molecules, considering all long-range electrostatic interactions.
T5 821-1175 Sentence denotes The results suggest the structured part of the protein, HU:PrP(127-227) is stabilized overall from addition of the glycans, specifically by extensions of Helix-B and Helix-C and reduced flexibility of the linking turn containing Asn197, although some regions such as residues in the turn (165-170) between Strand-B and Helix-B have increased flexibility.
T6 1176-1337 Sentence denotes The stabilization appears indirect, by reducing the mobility of the surrounding water molecules, and not from specific interactions such as H bonds or ion pairs.
T7 1338-1568 Sentence denotes The results are consistent with glycosylation at Asn197 having a stabilizing role, while that at Asn181, in a region with already stable secondary structure, having a more functional role, in agreement with literature suggestions.
T8 1569-1902 Sentence denotes Due to three negatively charged SiaLe(x) groups per N-glycan, the surface electrostatic properties change to a negative electrostatic field covering most of the C-terminal part, including the surface of Helix-B and Helix-C, while the positively charged N-terminal part PrP(90-126) of undefined structure creates a positive potential.
T9 1903-2080 Sentence denotes The unusual hydrophilic Helix-A (144-152) is not covered by either of these dominant electrostatic fields, and modeling shows it could readily dimerize in anti parallel fashion.
T10 2081-2367 Sentence denotes In combination with separate simulations of the GPI anchor in a membrane model, the results show the GPI anchor is highly flexible and would maintain the protein at a distance between 9 and 13 A from the membrane surface, with little influence on its structure or orientational freedom.

ICD10

Id Subject Object Predicate Lexical cue
T1 1215-1236 http://purl.bioontology.org/ontology/ICD10/Z74.0 denotes reducing the mobility

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 45-52 FMAID:165447 denotes protein
_T2 45-52 FMAID:67257 denotes protein
_T3 77-93 FMAID:82742 denotes oligosaccharides
_T4 77-93 FMAID:196731 denotes oligosaccharides
_T5 162-169 FMAID:165447 denotes protein
_T6 162-169 FMAID:67257 denotes protein
_T7 203-213 FMAID:70637 denotes transition
_T8 203-213 FMAID:171495 denotes transition
_T9 606-613 FMAID:67257 denotes protein
_T10 606-613 FMAID:165447 denotes protein
_T11 868-875 FMAID:165447 denotes protein
_T12 868-875 FMAID:67257 denotes protein
_T13 975-980 FMAID:60992 denotes Helix
_T14 975-980 FMAID:161427 denotes Helix
_T15 987-992 FMAID:161427 denotes Helix
_T16 987-992 FMAID:60992 denotes Helix
_T17 1140-1145 FMAID:60992 denotes Helix
_T18 1140-1145 FMAID:161427 denotes Helix
_T19 1635-1642 FMAID:50594 denotes surface
_T20 1635-1642 FMAID:146300 denotes surface
_T21 1761-1768 FMAID:50594 denotes surface
_T22 1761-1768 FMAID:146300 denotes surface
_T23 1772-1777 FMAID:60992 denotes Helix
_T24 1772-1777 FMAID:161427 denotes Helix
_T25 1784-1789 FMAID:60992 denotes Helix
_T26 1784-1789 FMAID:161427 denotes Helix
_T27 1927-1932 FMAID:60992 denotes Helix
_T28 1927-1932 FMAID:161427 denotes Helix
_T29 2222-2230 FMAID:214734 denotes maintain
_T30 2235-2242 FMAID:165447 denotes protein
_T31 2235-2242 FMAID:67257 denotes protein
_T32 2294-2301 FMAID:146300 denotes surface
_T33 2294-2301 FMAID:50594 denotes surface

uniprot-human

Id Subject Object Predicate Lexical cue
T1 102-105 http://www.uniprot.org/uniprot/P06744 denotes GPI
T2 421-424 http://www.uniprot.org/uniprot/P06744 denotes GPI
T3 2129-2132 http://www.uniprot.org/uniprot/P06744 denotes GPI
T4 2182-2185 http://www.uniprot.org/uniprot/P06744 denotes GPI
T5 2129-2153 http://www.uniprot.org/uniprot/Q14444 denotes GPI anchor in a membrane

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 102-105 http://www.uniprot.org/uniprot/Q8C675 denotes GPI
T2 421-424 http://www.uniprot.org/uniprot/Q8C675 denotes GPI
T3 2129-2132 http://www.uniprot.org/uniprot/Q8C675 denotes GPI
T4 2182-2185 http://www.uniprot.org/uniprot/Q8C675 denotes GPI

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 39-44 http://purl.bioontology.org/ontology/NCBITAXON/94193 denotes prion
T2 39-44 http://purl.bioontology.org/ontology/NCBITAXON/94464 denotes prion
T3 156-161 http://purl.bioontology.org/ontology/NCBITAXON/94193 denotes prion
T4 156-161 http://purl.bioontology.org/ontology/NCBITAXON/94464 denotes prion
T5 297-300 http://purl.bioontology.org/ontology/NCBITAXON/604139 denotes non
T6 499-507 http://purl.bioontology.org/ontology/STY/T053 denotes behavior
T7 600-605 http://purl.bioontology.org/ontology/NCBITAXON/94193 denotes prion
T8 600-605 http://purl.bioontology.org/ontology/NCBITAXON/94464 denotes prion
T9 975-980 http://purl.bioontology.org/ontology/NCBITAXON/6534 denotes Helix
T10 987-992 http://purl.bioontology.org/ontology/NCBITAXON/6534 denotes Helix
T11 1140-1145 http://purl.bioontology.org/ontology/NCBITAXON/6534 denotes Helix
T12 1610-1616 http://purl.bioontology.org/ontology/STY/T096 denotes groups
T13 1772-1777 http://purl.bioontology.org/ontology/NCBITAXON/6534 denotes Helix
T14 1784-1789 http://purl.bioontology.org/ontology/NCBITAXON/6534 denotes Helix
T15 1915-1926 http://purl.bioontology.org/ontology/NCBITAXON/8683 denotes hydrophilic
T16 1915-1926 http://purl.bioontology.org/ontology/NCBITAXON/415099 denotes hydrophilic
T17 1927-1932 http://purl.bioontology.org/ontology/NCBITAXON/6534 denotes Helix
T18 2063-2071 http://purl.bioontology.org/ontology/NCBITAXON/871272 denotes parallel

GO-BP

Id Subject Object Predicate Lexical cue
T1 123-136 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T2 301-313 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylated
T3 421-440 http://purl.obolibrary.org/obo/GO_0016255 denotes GPI anchor attached
T4 499-507 http://purl.obolibrary.org/obo/GO_0007610 denotes behavior

GO-MF

Id Subject Object Predicate Lexical cue
T1 106-112 http://purl.obolibrary.org/obo/GO_0043495 denotes anchor
T2 425-431 http://purl.obolibrary.org/obo/GO_0043495 denotes anchor
T3 2133-2139 http://purl.obolibrary.org/obo/GO_0043495 denotes anchor
T4 2186-2192 http://purl.obolibrary.org/obo/GO_0043495 denotes anchor

GO-CC

Id Subject Object Predicate Lexical cue
T1 2129-2153 http://purl.obolibrary.org/obo/GO_0046658 denotes GPI anchor in a membrane
T2 2133-2153 http://purl.obolibrary.org/obo/GO_0031225 denotes anchor in a membrane
T3 2145-2153 http://purl.obolibrary.org/obo/GO_0016020 denotes membrane
T4 2285-2293 http://purl.obolibrary.org/obo/GO_0016020 denotes membrane

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 961-971 http://purl.obolibrary.org/obo/UBERON_2000106 denotes extensions
T2 975-980 http://purl.obolibrary.org/obo/UBERON_0002488 denotes Helix
T3 987-992 http://purl.obolibrary.org/obo/UBERON_0002488 denotes Helix
T4 1140-1145 http://purl.obolibrary.org/obo/UBERON_0002488 denotes Helix
T5 1772-1777 http://purl.obolibrary.org/obo/UBERON_0002488 denotes Helix
T6 1784-1789 http://purl.obolibrary.org/obo/UBERON_0002488 denotes Helix
T7 1927-1932 http://purl.obolibrary.org/obo/UBERON_0002488 denotes Helix

EDAM-topics

Id Subject Object Predicate Lexical cue
T1 0-18 http://edamontology.org/topic_0176 denotes Molecular dynamics
T2 33-38 http://edamontology.org/topic_2815 denotes human
T3 45-52 http://edamontology.org/topic_0078 denotes protein
T4 162-169 http://edamontology.org/topic_0078 denotes protein
T5 221-228 http://edamontology.org/topic_0634 denotes disease
T6 274-277 http://edamontology.org/topic_0593 denotes NMR
T7 535-553 http://edamontology.org/topic_0176 denotes molecular dynamics
T8 575-583 http://edamontology.org/topic_0749 denotes terminal
T9 594-599 http://edamontology.org/topic_2815 denotes human
T10 606-613 http://edamontology.org/topic_0078 denotes protein
T11 755-764 http://edamontology.org/topic_2839 denotes molecules
T12 807-819 http://edamontology.org/topic_0602 denotes interactions
T13 868-875 http://edamontology.org/topic_0078 denotes protein
T14 1262-1271 http://edamontology.org/topic_2839 denotes molecules
T15 1295-1307 http://edamontology.org/topic_0602 denotes interactions
T16 1475-1494 http://edamontology.org/topic_0694 denotes secondary structure
T17 1475-1494 http://edamontology.org/topic_3542 denotes secondary structure
T18 1732-1740 http://edamontology.org/topic_0749 denotes terminal
T19 1824-1832 http://edamontology.org/topic_0749 denotes terminal
T20 2235-2242 http://edamontology.org/topic_0078 denotes protein

EDAM-DFO

Id Subject Object Predicate Lexical cue
T1 0-29 http://edamontology.org/operation_2476 denotes Molecular dynamics simulation
T2 45-52 http://edamontology.org/data_1467 denotes protein
T3 45-52 http://edamontology.org/format_1208 denotes protein
T4 162-169 http://edamontology.org/data_1467 denotes protein
T5 162-169 http://edamontology.org/format_1208 denotes protein
T6 278-288 http://edamontology.org/data_0883 denotes structures
T7 459-469 http://edamontology.org/data_0883 denotes structural
T8 535-565 http://edamontology.org/operation_2476 denotes molecular dynamics simulations
T9 606-613 http://edamontology.org/format_1208 denotes protein
T10 606-613 http://edamontology.org/data_1467 denotes protein
T11 845-855 http://edamontology.org/data_0883 denotes structured
T12 868-875 http://edamontology.org/format_1208 denotes protein
T13 868-875 http://edamontology.org/data_1467 denotes protein
T14 1088-1096 http://edamontology.org/data_1756 denotes residues
T15 1127-1133 http://edamontology.org/data_0853 denotes Strand
T16 1331-1336 http://edamontology.org/format_1996 denotes pairs
T17 1475-1494 http://edamontology.org/data_2366 denotes secondary structure
T18 1475-1494 http://edamontology.org/data_2081 denotes secondary structure
T19 1475-1494 http://edamontology.org/data_0880 denotes secondary structure
T20 1475-1494 http://edamontology.org/operation_2488 denotes secondary structure
T21 1475-1494 http://edamontology.org/operation_0500 denotes secondary structure
T22 1475-1494 http://edamontology.org/data_2973 denotes secondary structure
T23 1475-1494 http://edamontology.org/data_2880 denotes secondary structure
T24 1475-1494 http://edamontology.org/operation_2482 denotes secondary structure
T25 1475-1494 http://edamontology.org/data_2881 denotes secondary structure
T26 1485-1494 http://edamontology.org/data_0883 denotes structure
T27 1863-1872 http://edamontology.org/data_0883 denotes structure
T28 2235-2242 http://edamontology.org/data_1467 denotes protein
T29 2235-2242 http://edamontology.org/format_1208 denotes protein
T30 2235-2245 http://edamontology.org/data_1755 denotes protein at
T31 2332-2341 http://edamontology.org/data_0883 denotes structure

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 102-112 http://rdf.glycoinfo.org/glycan/G00045MO denotes GPI anchor
T2 421-431 http://rdf.glycoinfo.org/glycan/G00045MO denotes GPI anchor
T3 2129-2139 http://rdf.glycoinfo.org/glycan/G00045MO denotes GPI anchor
T4 2182-2192 http://rdf.glycoinfo.org/glycan/G00045MO denotes GPI anchor
T5 1621-1629 http://rdf.glycoinfo.org/glycan/G00027MO denotes N-glycan

GlycoBiology-Epitope

Id Subject Object Predicate Lexical cue
PD-GlycoEpitope-B_T1 1845-1848 http://www.glycoepitope.jp/epitopes/AN0580 denotes 126

GlyTouCan-IUPAC

Id Subject Object Predicate Lexical cue
GlycanIUPAC_T1 297-300 "http://rdf.glycoinfo.org/glycan/G02780QX" denotes non
GlycanIUPAC_T2 297-300 "http://rdf.glycoinfo.org/glycan/G18425DX" denotes non
GlycanIUPAC_T3 297-300 "http://rdf.glycoinfo.org/glycan/G18630JE" denotes non
GlycanIUPAC_T4 297-300 "http://rdf.glycoinfo.org/glycan/G01004IT" denotes non
GlycanIUPAC_T5 297-300 "http://rdf.glycoinfo.org/glycan/G87301QZ" denotes non
GlycanIUPAC_T6 297-300 "http://rdf.glycoinfo.org/glycan/G39790GW" denotes non
GlycanIUPAC_T7 297-300 "http://rdf.glycoinfo.org/glycan/G42928BB" denotes non
GlycanIUPAC_T8 297-300 "http://rdf.glycoinfo.org/glycan/G51134HC" denotes non
GlycanIUPAC_T9 297-300 "http://rdf.glycoinfo.org/glycan/G68183GR" denotes non
GlycanIUPAC_T10 297-300 "http://rdf.glycoinfo.org/glycan/G46883FA" denotes non
GlycanIUPAC_T11 297-300 "http://rdf.glycoinfo.org/glycan/G54702VY" denotes non
GlycanIUPAC_T12 778-781 "http://rdf.glycoinfo.org/glycan/G41652MJ" denotes all
GlycanIUPAC_T13 778-781 "http://rdf.glycoinfo.org/glycan/G20761YC" denotes all
GlycanIUPAC_T14 778-781 "http://rdf.glycoinfo.org/glycan/G19807HM" denotes all
GlycanIUPAC_T15 778-781 "http://rdf.glycoinfo.org/glycan/G20351TE" denotes all
GlycanIUPAC_T16 778-781 "http://rdf.glycoinfo.org/glycan/G71957MR" denotes all
GlycanIUPAC_T17 778-781 "http://rdf.glycoinfo.org/glycan/G59040AE" denotes all
GlycanIUPAC_T18 778-781 "http://rdf.glycoinfo.org/glycan/G14987PW" denotes all
GlycanIUPAC_T19 778-781 "http://rdf.glycoinfo.org/glycan/G95064PC" denotes all
GlycanIUPAC_T20 778-781 "http://rdf.glycoinfo.org/glycan/G39143AQ" denotes all
GlycanIUPAC_T21 778-781 "http://rdf.glycoinfo.org/glycan/G65149OO" denotes all
GlycanIUPAC_T22 778-781 "http://rdf.glycoinfo.org/glycan/G02766SY" denotes all
GlycanIUPAC_T23 778-781 "http://rdf.glycoinfo.org/glycan/G26019KJ" denotes all
GlycanIUPAC_T24 778-781 "http://rdf.glycoinfo.org/glycan/G36429CZ" denotes all
GlycanIUPAC_T25 778-781 "http://rdf.glycoinfo.org/glycan/G89633TP" denotes all
GlycanIUPAC_T26 778-781 "http://rdf.glycoinfo.org/glycan/G28494FO" denotes all
GlycanIUPAC_T27 778-781 "http://rdf.glycoinfo.org/glycan/G06219CP" denotes all
GlycanIUPAC_T28 778-781 "http://rdf.glycoinfo.org/glycan/G44237SM" denotes all
GlycanIUPAC_T29 778-781 "http://rdf.glycoinfo.org/glycan/G57948RL" denotes all
GlycanIUPAC_T30 778-781 "http://rdf.glycoinfo.org/glycan/G64016DN" denotes all
GlycanIUPAC_T31 778-781 "http://rdf.glycoinfo.org/glycan/G14536PC" denotes all
GlycanIUPAC_T32 778-781 "http://rdf.glycoinfo.org/glycan/G14356FW" denotes all
GlycanIUPAC_T33 778-781 "http://rdf.glycoinfo.org/glycan/G34565UO" denotes all
GlycanIUPAC_T34 778-781 "http://rdf.glycoinfo.org/glycan/G67124MW" denotes all
GlycanIUPAC_T35 778-781 "http://rdf.glycoinfo.org/glycan/G71457ZU" denotes all
GlycanIUPAC_T36 778-781 "http://rdf.glycoinfo.org/glycan/G55228VZ" denotes all
GlycanIUPAC_T37 778-781 "http://rdf.glycoinfo.org/glycan/G31034MJ" denotes all
GlycanIUPAC_T38 778-781 "http://rdf.glycoinfo.org/glycan/G25776IP" denotes all
GlycanIUPAC_T39 778-781 "http://rdf.glycoinfo.org/glycan/G64442BV" denotes all
GlycanIUPAC_T40 778-781 "http://rdf.glycoinfo.org/glycan/G57018LE" denotes all
GlycanIUPAC_T41 778-781 "http://rdf.glycoinfo.org/glycan/G61761GX" denotes all
GlycanIUPAC_T42 778-781 "http://rdf.glycoinfo.org/glycan/G76318UX" denotes all
GlycanIUPAC_T43 778-781 "http://rdf.glycoinfo.org/glycan/G61906ER" denotes all
GlycanIUPAC_T44 778-781 "http://rdf.glycoinfo.org/glycan/G68723GR" denotes all
GlycanIUPAC_T45 778-781 "http://rdf.glycoinfo.org/glycan/G19540LE" denotes all
GlycanIUPAC_T46 778-781 "http://rdf.glycoinfo.org/glycan/G74944PO" denotes all
GlycanIUPAC_T47 778-781 "http://rdf.glycoinfo.org/glycan/G89489ZJ" denotes all
GlycanIUPAC_T48 778-781 "http://rdf.glycoinfo.org/glycan/G04434YU" denotes all
GlycanIUPAC_T49 778-781 "http://rdf.glycoinfo.org/glycan/G21450PB" denotes all
GlycanIUPAC_T50 778-781 "http://rdf.glycoinfo.org/glycan/G93629QY" denotes all
GlycanIUPAC_T51 778-781 "http://rdf.glycoinfo.org/glycan/G02603TR" denotes all
GlycanIUPAC_T52 778-781 "http://rdf.glycoinfo.org/glycan/G40280JP" denotes all
GlycanIUPAC_T53 778-781 "http://rdf.glycoinfo.org/glycan/G95259IC" denotes all
GlycanIUPAC_T54 778-781 "http://rdf.glycoinfo.org/glycan/G26900FE" denotes all
GlycanIUPAC_T55 778-781 "http://rdf.glycoinfo.org/glycan/G21346KK" denotes all
GlycanIUPAC_T56 778-781 "http://rdf.glycoinfo.org/glycan/G62509FF" denotes all
GlycanIUPAC_T57 778-781 "http://rdf.glycoinfo.org/glycan/G83932AK" denotes all
GlycanIUPAC_T58 778-781 "http://rdf.glycoinfo.org/glycan/G96978IB" denotes all
GlycanIUPAC_T59 778-781 "http://rdf.glycoinfo.org/glycan/G34275DN" denotes all
GlycanIUPAC_T60 778-781 "http://rdf.glycoinfo.org/glycan/G07071JF" denotes all
GlycanIUPAC_T61 778-781 "http://rdf.glycoinfo.org/glycan/G80639QD" denotes all
GlycanIUPAC_T62 778-781 "http://rdf.glycoinfo.org/glycan/G99460PJ" denotes all
GlycanIUPAC_T63 778-781 "http://rdf.glycoinfo.org/glycan/G22024BZ" denotes all
GlycanIUPAC_T64 778-781 "http://rdf.glycoinfo.org/glycan/G74097ZY" denotes all
GlycanIUPAC_T65 778-781 "http://rdf.glycoinfo.org/glycan/G84439YP" denotes all
GlycanIUPAC_T66 778-781 "http://rdf.glycoinfo.org/glycan/G52207WQ" denotes all
GlycanIUPAC_T67 778-781 "http://rdf.glycoinfo.org/glycan/G90695MS" denotes all
GlycanIUPAC_T68 778-781 "http://rdf.glycoinfo.org/glycan/G50398QX" denotes all
GlycanIUPAC_T69 778-781 "http://rdf.glycoinfo.org/glycan/G12166ZT" denotes all
GlycanIUPAC_T70 778-781 "http://rdf.glycoinfo.org/glycan/G48368BR" denotes all
GlycanIUPAC_T71 778-781 "http://rdf.glycoinfo.org/glycan/G57407RW" denotes all
GlycanIUPAC_T72 778-781 "http://rdf.glycoinfo.org/glycan/G00386TY" denotes all
GlycanIUPAC_T73 778-781 "http://rdf.glycoinfo.org/glycan/G18723JK" denotes all
GlycanIUPAC_T74 778-781 "http://rdf.glycoinfo.org/glycan/G93757OR" denotes all
GlycanIUPAC_T75 778-781 "http://rdf.glycoinfo.org/glycan/G29006SI" denotes all
GlycanIUPAC_T76 778-781 "http://rdf.glycoinfo.org/glycan/G03099OQ" denotes all
GlycanIUPAC_T77 778-781 "http://rdf.glycoinfo.org/glycan/G53739OW" denotes all
GlycanIUPAC_T78 778-781 "http://rdf.glycoinfo.org/glycan/G70440ZO" denotes all
GlycanIUPAC_T79 778-781 "http://rdf.glycoinfo.org/glycan/G29951RR" denotes all
GlycanIUPAC_T80 778-781 "http://rdf.glycoinfo.org/glycan/G58402TI" denotes all
GlycanIUPAC_T81 778-781 "http://rdf.glycoinfo.org/glycan/G39875TP" denotes all
GlycanIUPAC_T82 778-781 "http://rdf.glycoinfo.org/glycan/G83439QV" denotes all
GlycanIUPAC_T83 778-781 "http://rdf.glycoinfo.org/glycan/G41762RC" denotes all
GlycanIUPAC_T84 778-781 "http://rdf.glycoinfo.org/glycan/G91604UI" denotes all
GlycanIUPAC_T85 778-781 "http://rdf.glycoinfo.org/glycan/G88447WE" denotes all
GlycanIUPAC_T86 778-781 "http://rdf.glycoinfo.org/glycan/G93634BS" denotes all
GlycanIUPAC_T87 778-781 "http://rdf.glycoinfo.org/glycan/G02587BH" denotes all
GlycanIUPAC_T88 778-781 "http://rdf.glycoinfo.org/glycan/G43511MX" denotes all
GlycanIUPAC_T89 778-781 "http://rdf.glycoinfo.org/glycan/G64958DH" denotes all
GlycanIUPAC_T90 778-781 "http://rdf.glycoinfo.org/glycan/G30384TR" denotes all
GlycanIUPAC_T91 778-781 "http://rdf.glycoinfo.org/glycan/G15624EX" denotes all
GlycanIUPAC_T92 778-781 "http://rdf.glycoinfo.org/glycan/G22706ST" denotes all
GlycanIUPAC_T93 778-781 "http://rdf.glycoinfo.org/glycan/G57408PI" denotes all
GlycanIUPAC_T94 778-781 "http://rdf.glycoinfo.org/glycan/G86403XX" denotes all
GlycanIUPAC_T95 778-781 "http://rdf.glycoinfo.org/glycan/G78043YB" denotes all
GlycanIUPAC_T96 778-781 "http://rdf.glycoinfo.org/glycan/G18952JK" denotes all
GlycanIUPAC_T97 778-781 "http://rdf.glycoinfo.org/glycan/G49020ND" denotes all
GlycanIUPAC_T98 778-781 "http://rdf.glycoinfo.org/glycan/G63590YW" denotes all
GlycanIUPAC_T99 778-781 "http://rdf.glycoinfo.org/glycan/G22793KS" denotes all
GlycanIUPAC_T100 778-781 "http://rdf.glycoinfo.org/glycan/G64134SS" denotes all
GlycanIUPAC_T101 778-781 "http://rdf.glycoinfo.org/glycan/G17338HY" denotes all
GlycanIUPAC_T102 778-781 "http://rdf.glycoinfo.org/glycan/G99745XF" denotes all
GlycanIUPAC_T103 778-781 "http://rdf.glycoinfo.org/glycan/G27782HN" denotes all
GlycanIUPAC_T104 778-781 "http://rdf.glycoinfo.org/glycan/G57496DC" denotes all
GlycanIUPAC_T105 778-781 "http://rdf.glycoinfo.org/glycan/G93169WB" denotes all
GlycanIUPAC_T106 778-781 "http://rdf.glycoinfo.org/glycan/G05518TD" denotes all
GlycanIUPAC_T107 778-781 "http://rdf.glycoinfo.org/glycan/G62603DN" denotes all
GlycanIUPAC_T108 778-781 "http://rdf.glycoinfo.org/glycan/G59574FS" denotes all
GlycanIUPAC_T109 778-781 "http://rdf.glycoinfo.org/glycan/G47567WC" denotes all

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 961-971 http://purl.obolibrary.org/obo/UBERON_2000106 denotes extensions
PD-UBERON-AE-B_T2 975-980 http://purl.obolibrary.org/obo/UBERON_0002488 denotes Helix
PD-UBERON-AE-B_T3 987-992 http://purl.obolibrary.org/obo/UBERON_0002488 denotes Helix
PD-UBERON-AE-B_T4 1140-1145 http://purl.obolibrary.org/obo/UBERON_0002488 denotes Helix
PD-UBERON-AE-B_T5 1772-1777 http://purl.obolibrary.org/obo/UBERON_0002488 denotes Helix
PD-UBERON-AE-B_T6 1784-1789 http://purl.obolibrary.org/obo/UBERON_0002488 denotes Helix
PD-UBERON-AE-B_T7 1927-1932 http://purl.obolibrary.org/obo/UBERON_0002488 denotes Helix

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 240-247 Disease denotes scrapie http://purl.obolibrary.org/obo/MONDO_0006961

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 33-38 OrganismTaxon denotes human 9606
T2 594-599 OrganismTaxon denotes human 9606

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 961-971 Body_part denotes extensions http://purl.obolibrary.org/obo/UBERON_2000106
T2 975-980 Body_part denotes Helix http://purl.obolibrary.org/obo/UBERON_0002488
T3 987-992 Body_part denotes Helix http://purl.obolibrary.org/obo/UBERON_0002488
T4 1140-1145 Body_part denotes Helix http://purl.obolibrary.org/obo/UBERON_0002488
T5 1772-1777 Body_part denotes Helix http://purl.obolibrary.org/obo/UBERON_0002488
T6 1784-1789 Body_part denotes Helix http://purl.obolibrary.org/obo/UBERON_0002488
T7 1927-1932 Body_part denotes Helix http://purl.obolibrary.org/obo/UBERON_0002488
T8 2145-2153 Body_part denotes membrane http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158
T11 2285-2293 Body_part denotes membrane http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158