PubMed:10764833 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/10764833","sourcedb":"PubMed","sourceid":"10764833","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/10764833","text":"Structural characterization of a xylanase from psychrophilic yeast by mass spectrometry.\nThe complete structural characterization of the xylanase, a glycoprotein constituted of 338 amino acids, from psychrophilic antarctic yeast Criptococcus albidus TAE85 was achieved both at the protein and carbohydrate level by exploiting mass spectrometric procedures. The verification of the primary structure, the definition of the S-S pattern, the assignment of glycosylation sites and the investigation of glycosylation pattern were performed. This analysis revealed the occurrence of N-glycosylation only at Asn254, modified by high-mannose structure; moreover the protein resulted to be O-glycosylated with GalGalNAc structures. The data obtained on both the N- and O-linked glycans in the cold xylanase constitute the first description of the glycosylation pattern in psychrophylic microorganisms and suggest that the glycosylation system in cold-adapted organisms might have similarities as well as differences with respect to mesophylic and thermophylic cells. The cysteine pairings were eventually identified as Cys173-Cys205 and Cys272-Cys278, with Cys89 showing a free thiol group. These data suggest that a common folding motif might occur within the entire xylanase family in which the second Cys is linked to the third one with the fourth and fifth joined together.","tracks":[{"project":"performance-test","denotations":[{"id":"PD-UBERON-AE-B_T1","span":{"begin":950,"end":959},"obj":"http://purl.obolibrary.org/obo/UBERON_0000062"}],"attributes":[{"subj":"PD-UBERON-AE-B_T1","pred":"source","obj":"performance-test"}]},{"project":"GlycoBiology-FMA","denotations":[{"id":"_T1","span":{"begin":149,"end":161},"obj":"FMAID:167256"},{"id":"_T2","span":{"begin":149,"end":161},"obj":"FMAID:62925"},{"id":"_T3","span":{"begin":181,"end":192},"obj":"FMAID:196728"},{"id":"_T4","span":{"begin":181,"end":192},"obj":"FMAID:82739"},{"id":"_T5","span":{"begin":281,"end":288},"obj":"FMAID:67257"},{"id":"_T6","span":{"begin":281,"end":288},"obj":"FMAID:165447"},{"id":"_T7","span":{"begin":293,"end":305},"obj":"FMAID:82737"},{"id":"_T8","span":{"begin":293,"end":305},"obj":"FMAID:197276"},{"id":"_T9","span":{"begin":626,"end":633},"obj":"FMAID:82801"},{"id":"_T10","span":{"begin":626,"end":633},"obj":"FMAID:196796"},{"id":"_T11","span":{"begin":658,"end":665},"obj":"FMAID:165447"},{"id":"_T12","span":{"begin":658,"end":665},"obj":"FMAID:67257"},{"id":"_T13","span":{"begin":927,"end":936},"obj":"FMAID:66644"},{"id":"_T14","span":{"begin":927,"end":936},"obj":"FMAID:185472"},{"id":"_T15","span":{"begin":950,"end":959},"obj":"FMAID:67498"},{"id":"_T16","span":{"begin":950,"end":959},"obj":"FMAID:166081"},{"id":"_T17","span":{"begin":1051,"end":1056},"obj":"FMAID:68646"},{"id":"_T18","span":{"begin":1051,"end":1056},"obj":"FMAID:169002"},{"id":"_T19","span":{"begin":1062,"end":1070},"obj":"FMAID:196740"},{"id":"_T20","span":{"begin":1062,"end":1070},"obj":"FMAID:82751"}],"namespaces":[{"prefix":"FMAID","uri":"http://purl.org/sig/ont/fma/fma"}],"attributes":[{"subj":"_T1","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T2","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T3","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T4","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T5","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T6","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T7","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T8","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T9","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T10","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T11","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T12","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T13","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T14","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T15","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T16","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T17","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T18","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T19","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T20","pred":"source","obj":"GlycoBiology-FMA"}]},{"project":"GlycoBiology-NCBITAXON","denotations":[{"id":"T1","span":{"begin":213,"end":222},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/74032"},{"id":"T2","span":{"begin":229,"end":241},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/106841"},{"id":"T3","span":{"begin":229,"end":241},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/107441"},{"id":"T4","span":{"begin":229,"end":241},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/561281"},{"id":"T5","span":{"begin":229,"end":249},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/100951"},{"id":"T6","span":{"begin":1051,"end":1056},"obj":"http://purl.bioontology.org/ontology/STY/T025"},{"id":"T7","span":{"begin":1175,"end":1180},"obj":"http://purl.bioontology.org/ontology/STY/T096"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T2","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T3","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T4","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T5","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T6","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T7","pred":"source","obj":"GlycoBiology-NCBITAXON"}]},{"project":"sentences","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":88},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":89,"end":356},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":357,"end":535},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":536,"end":722},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":723,"end":1057},"obj":"Sentence"},{"id":"TextSentencer_T6","span":{"begin":1058,"end":1181},"obj":"Sentence"},{"id":"TextSentencer_T7","span":{"begin":1182,"end":1368},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":88},"obj":"Sentence"},{"id":"T2","span":{"begin":89,"end":356},"obj":"Sentence"},{"id":"T3","span":{"begin":357,"end":535},"obj":"Sentence"},{"id":"T4","span":{"begin":536,"end":722},"obj":"Sentence"},{"id":"T5","span":{"begin":723,"end":1057},"obj":"Sentence"},{"id":"T6","span":{"begin":1058,"end":1181},"obj":"Sentence"},{"id":"T7","span":{"begin":1182,"end":1368},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":88},"obj":"Sentence"},{"id":"T2","span":{"begin":89,"end":356},"obj":"Sentence"},{"id":"T3","span":{"begin":357,"end":535},"obj":"Sentence"},{"id":"T4","span":{"begin":536,"end":722},"obj":"Sentence"},{"id":"T5","span":{"begin":723,"end":1057},"obj":"Sentence"},{"id":"T6","span":{"begin":1058,"end":1181},"obj":"Sentence"},{"id":"T7","span":{"begin":1182,"end":1368},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"TextSentencer_T1","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T2","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T3","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T4","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T5","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T6","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T7","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"}]},{"project":"GO-BP","denotations":[{"id":"T1","span":{"begin":33,"end":41},"obj":"http://purl.obolibrary.org/obo/GO_0031176"},{"id":"T2","span":{"begin":137,"end":145},"obj":"http://purl.obolibrary.org/obo/GO_0031176"},{"id":"T3","span":{"begin":789,"end":797},"obj":"http://purl.obolibrary.org/obo/GO_0031176"},{"id":"T4","span":{"begin":1259,"end":1267},"obj":"http://purl.obolibrary.org/obo/GO_0031176"},{"id":"T5","span":{"begin":453,"end":466},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T6","span":{"begin":498,"end":511},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T7","span":{"begin":579,"end":592},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T8","span":{"begin":838,"end":851},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T9","span":{"begin":683,"end":695},"obj":"http://purl.obolibrary.org/obo/GO_0070085"}],"attributes":[{"subj":"T1","pred":"source","obj":"GO-BP"},{"subj":"T2","pred":"source","obj":"GO-BP"},{"subj":"T3","pred":"source","obj":"GO-BP"},{"subj":"T4","pred":"source","obj":"GO-BP"},{"subj":"T5","pred":"source","obj":"GO-BP"},{"subj":"T6","pred":"source","obj":"GO-BP"},{"subj":"T7","pred":"source","obj":"GO-BP"},{"subj":"T8","pred":"source","obj":"GO-BP"},{"subj":"T9","pred":"source","obj":"GO-BP"}]},{"project":"GO-CC","denotations":[{"id":"T1","span":{"begin":1051,"end":1056},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"attributes":[{"subj":"T1","pred":"source","obj":"GO-CC"}]},{"project":"UBERON-AE","denotations":[{"id":"T1","span":{"begin":950,"end":959},"obj":"http://purl.obolibrary.org/obo/UBERON_0000062"}],"attributes":[{"subj":"T1","pred":"source","obj":"UBERON-AE"}]},{"project":"EDAM-topics","denotations":[{"id":"T1","span":{"begin":61,"end":66},"obj":"http://edamontology.org/topic_0782"},{"id":"T2","span":{"begin":61,"end":66},"obj":"http://edamontology.org/topic_2817"},{"id":"T3","span":{"begin":70,"end":87},"obj":"http://edamontology.org/topic_0134"},{"id":"T4","span":{"begin":70,"end":87},"obj":"http://edamontology.org/topic_3520"},{"id":"T5","span":{"begin":181,"end":192},"obj":"http://edamontology.org/topic_0154"},{"id":"T6","span":{"begin":223,"end":228},"obj":"http://edamontology.org/topic_0782"},{"id":"T7","span":{"begin":223,"end":228},"obj":"http://edamontology.org/topic_2817"},{"id":"T8","span":{"begin":281,"end":288},"obj":"http://edamontology.org/topic_0078"},{"id":"T9","span":{"begin":293,"end":305},"obj":"http://edamontology.org/topic_0152"},{"id":"T10","span":{"begin":326,"end":344},"obj":"http://edamontology.org/topic_3520"},{"id":"T11","span":{"begin":326,"end":344},"obj":"http://edamontology.org/topic_0134"},{"id":"T12","span":{"begin":658,"end":665},"obj":"http://edamontology.org/topic_0078"},{"id":"T13","span":{"begin":1223,"end":1228},"obj":"http://edamontology.org/topic_0158"}],"attributes":[{"subj":"T1","pred":"source","obj":"EDAM-topics"},{"subj":"T2","pred":"source","obj":"EDAM-topics"},{"subj":"T3","pred":"source","obj":"EDAM-topics"},{"subj":"T4","pred":"source","obj":"EDAM-topics"},{"subj":"T5","pred":"source","obj":"EDAM-topics"},{"subj":"T6","pred":"source","obj":"EDAM-topics"},{"subj":"T7","pred":"source","obj":"EDAM-topics"},{"subj":"T8","pred":"source","obj":"EDAM-topics"},{"subj":"T9","pred":"source","obj":"EDAM-topics"},{"subj":"T10","pred":"source","obj":"EDAM-topics"},{"subj":"T11","pred":"source","obj":"EDAM-topics"},{"subj":"T12","pred":"source","obj":"EDAM-topics"},{"subj":"T13","pred":"source","obj":"EDAM-topics"}]},{"project":"EDAM-DFO","denotations":[{"id":"T1","span":{"begin":0,"end":10},"obj":"http://edamontology.org/data_0883"},{"id":"T2","span":{"begin":70,"end":87},"obj":"http://edamontology.org/data_2536"},{"id":"T3","span":{"begin":70,"end":87},"obj":"http://edamontology.org/data_3147"},{"id":"T4","span":{"begin":102,"end":112},"obj":"http://edamontology.org/data_0883"},{"id":"T5","span":{"begin":281,"end":288},"obj":"http://edamontology.org/data_1467"},{"id":"T6","span":{"begin":281,"end":288},"obj":"http://edamontology.org/format_1208"},{"id":"T7","span":{"begin":326,"end":344},"obj":"http://edamontology.org/data_2536"},{"id":"T8","span":{"begin":389,"end":398},"obj":"http://edamontology.org/data_0883"},{"id":"T9","span":{"begin":541,"end":549},"obj":"http://edamontology.org/operation_2945"},{"id":"T10","span":{"begin":634,"end":643},"obj":"http://edamontology.org/data_0883"},{"id":"T11","span":{"begin":658,"end":665},"obj":"http://edamontology.org/format_1208"},{"id":"T12","span":{"begin":658,"end":665},"obj":"http://edamontology.org/data_1467"},{"id":"T13","span":{"begin":711,"end":721},"obj":"http://edamontology.org/data_0883"},{"id":"T14","span":{"begin":727,"end":731},"obj":"http://edamontology.org/data_0006"},{"id":"T15","span":{"begin":1071,"end":1079},"obj":"http://edamontology.org/format_1996"},{"id":"T16","span":{"begin":1096,"end":1106},"obj":"http://edamontology.org/data_2611"},{"id":"T17","span":{"begin":1096,"end":1106},"obj":"http://edamontology.org/data_0842"},{"id":"T18","span":{"begin":1188,"end":1192},"obj":"http://edamontology.org/data_0006"}],"attributes":[{"subj":"T1","pred":"source","obj":"EDAM-DFO"},{"subj":"T2","pred":"source","obj":"EDAM-DFO"},{"subj":"T3","pred":"source","obj":"EDAM-DFO"},{"subj":"T4","pred":"source","obj":"EDAM-DFO"},{"subj":"T5","pred":"source","obj":"EDAM-DFO"},{"subj":"T6","pred":"source","obj":"EDAM-DFO"},{"subj":"T7","pred":"source","obj":"EDAM-DFO"},{"subj":"T8","pred":"source","obj":"EDAM-DFO"},{"subj":"T9","pred":"source","obj":"EDAM-DFO"},{"subj":"T10","pred":"source","obj":"EDAM-DFO"},{"subj":"T11","pred":"source","obj":"EDAM-DFO"},{"subj":"T12","pred":"source","obj":"EDAM-DFO"},{"subj":"T13","pred":"source","obj":"EDAM-DFO"},{"subj":"T14","pred":"source","obj":"EDAM-DFO"},{"subj":"T15","pred":"source","obj":"EDAM-DFO"},{"subj":"T16","pred":"source","obj":"EDAM-DFO"},{"subj":"T17","pred":"source","obj":"EDAM-DFO"},{"subj":"T18","pred":"source","obj":"EDAM-DFO"}]},{"project":"GlyTouCan-IUPAC","denotations":[{"id":"GlycanIUPAC_T2","span":{"begin":701,"end":710},"obj":"\"http://rdf.glycoinfo.org/glycan/G64135HS\""},{"id":"GlycanIUPAC_T1","span":{"begin":701,"end":710},"obj":"\"http://rdf.glycoinfo.org/glycan/G44066MP\""}],"attributes":[{"subj":"GlycanIUPAC_T2","pred":"source","obj":"GlyTouCan-IUPAC"},{"subj":"GlycanIUPAC_T1","pred":"source","obj":"GlyTouCan-IUPAC"}]},{"project":"GlycoBiology-Motifs","denotations":[{"id":"T1","span":{"begin":621,"end":633},"obj":"http://rdf.glycoinfo.org/glycan/G00028MO"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-Motifs"}]},{"project":"Glycan-Motif","denotations":[{"id":"T1","span":{"begin":626,"end":633},"obj":"https://glytoucan.org/Structures/Glycans/G70323CJ"}],"attributes":[{"subj":"T1","pred":"source","obj":"Glycan-Motif"}]},{"project":"GlyCosmos6-Glycan-Motif-Structure","denotations":[{"id":"T1","span":{"begin":626,"end":633},"obj":"https://glytoucan.org/Structures/Glycans/G70323CJ"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Structure"}]},{"project":"GlyCosmos6-Glycan-Motif-Image","denotations":[{"id":"T1","span":{"begin":626,"end":633},"obj":"Glycan_Motif"}],"attributes":[{"id":"A1","pred":"image","subj":"T1","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G70323CJ"},{"subj":"T1","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"}]},{"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":950,"end":959},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0000468"},{"subj":"T1","pred":"source","obj":"Anatomy-UBERON"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"performance-test","color":"#d6ec93","default":true},{"id":"GlycoBiology-FMA","color":"#e893ec"},{"id":"GlycoBiology-NCBITAXON","color":"#93ecce"},{"id":"sentences","color":"#ecb493"},{"id":"GO-BP","color":"#9a93ec"},{"id":"GO-CC","color":"#a5ec93"},{"id":"UBERON-AE","color":"#ec93bf"},{"id":"EDAM-topics","color":"#93d9ec"},{"id":"EDAM-DFO","color":"#ece493"},{"id":"GlyTouCan-IUPAC","color":"#ca93ec"},{"id":"GlycoBiology-Motifs","color":"#93ecb0"},{"id":"Glycan-Motif","color":"#ec9693"},{"id":"GlyCosmos6-Glycan-Motif-Structure","color":"#93a9ec"},{"id":"GlyCosmos6-Glycan-Motif-Image","color":"#c3ec93"},{"id":"Anatomy-UBERON","color":"#ec93dd"}]}]}}