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PubMed:10764833 JSONTXT

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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 626-633 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 626-633 Glycan_Motif denotes mannose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G70323CJ

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-88 Sentence denotes Structural characterization of a xylanase from psychrophilic yeast by mass spectrometry.
TextSentencer_T2 89-356 Sentence denotes The complete structural characterization of the xylanase, a glycoprotein constituted of 338 amino acids, from psychrophilic antarctic yeast Criptococcus albidus TAE85 was achieved both at the protein and carbohydrate level by exploiting mass spectrometric procedures.
TextSentencer_T3 357-535 Sentence denotes The verification of the primary structure, the definition of the S-S pattern, the assignment of glycosylation sites and the investigation of glycosylation pattern were performed.
TextSentencer_T4 536-722 Sentence denotes This analysis revealed the occurrence of N-glycosylation only at Asn254, modified by high-mannose structure; moreover the protein resulted to be O-glycosylated with GalGalNAc structures.
TextSentencer_T5 723-1057 Sentence denotes The data obtained on both the N- and O-linked glycans in the cold xylanase constitute the first description of the glycosylation pattern in psychrophylic microorganisms and suggest that the glycosylation system in cold-adapted organisms might have similarities as well as differences with respect to mesophylic and thermophylic cells.
TextSentencer_T6 1058-1181 Sentence denotes The cysteine pairings were eventually identified as Cys173-Cys205 and Cys272-Cys278, with Cys89 showing a free thiol group.
TextSentencer_T7 1182-1368 Sentence denotes These data suggest that a common folding motif might occur within the entire xylanase family in which the second Cys is linked to the third one with the fourth and fifth joined together.
T1 0-88 Sentence denotes Structural characterization of a xylanase from psychrophilic yeast by mass spectrometry.
T2 89-356 Sentence denotes The complete structural characterization of the xylanase, a glycoprotein constituted of 338 amino acids, from psychrophilic antarctic yeast Criptococcus albidus TAE85 was achieved both at the protein and carbohydrate level by exploiting mass spectrometric procedures.
T3 357-535 Sentence denotes The verification of the primary structure, the definition of the S-S pattern, the assignment of glycosylation sites and the investigation of glycosylation pattern were performed.
T4 536-722 Sentence denotes This analysis revealed the occurrence of N-glycosylation only at Asn254, modified by high-mannose structure; moreover the protein resulted to be O-glycosylated with GalGalNAc structures.
T5 723-1057 Sentence denotes The data obtained on both the N- and O-linked glycans in the cold xylanase constitute the first description of the glycosylation pattern in psychrophylic microorganisms and suggest that the glycosylation system in cold-adapted organisms might have similarities as well as differences with respect to mesophylic and thermophylic cells.
T6 1058-1181 Sentence denotes The cysteine pairings were eventually identified as Cys173-Cys205 and Cys272-Cys278, with Cys89 showing a free thiol group.
T7 1182-1368 Sentence denotes These data suggest that a common folding motif might occur within the entire xylanase family in which the second Cys is linked to the third one with the fourth and fifth joined together.
T1 0-88 Sentence denotes Structural characterization of a xylanase from psychrophilic yeast by mass spectrometry.
T2 89-356 Sentence denotes The complete structural characterization of the xylanase, a glycoprotein constituted of 338 amino acids, from psychrophilic antarctic yeast Criptococcus albidus TAE85 was achieved both at the protein and carbohydrate level by exploiting mass spectrometric procedures.
T3 357-535 Sentence denotes The verification of the primary structure, the definition of the S-S pattern, the assignment of glycosylation sites and the investigation of glycosylation pattern were performed.
T4 536-722 Sentence denotes This analysis revealed the occurrence of N-glycosylation only at Asn254, modified by high-mannose structure; moreover the protein resulted to be O-glycosylated with GalGalNAc structures.
T5 723-1057 Sentence denotes The data obtained on both the N- and O-linked glycans in the cold xylanase constitute the first description of the glycosylation pattern in psychrophylic microorganisms and suggest that the glycosylation system in cold-adapted organisms might have similarities as well as differences with respect to mesophylic and thermophylic cells.
T6 1058-1181 Sentence denotes The cysteine pairings were eventually identified as Cys173-Cys205 and Cys272-Cys278, with Cys89 showing a free thiol group.
T7 1182-1368 Sentence denotes These data suggest that a common folding motif might occur within the entire xylanase family in which the second Cys is linked to the third one with the fourth and fifth joined together.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 626-633 https://glytoucan.org/Structures/Glycans/G70323CJ denotes mannose

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 149-161 FMAID:167256 denotes glycoprotein
_T2 149-161 FMAID:62925 denotes glycoprotein
_T3 181-192 FMAID:196728 denotes amino acids
_T4 181-192 FMAID:82739 denotes amino acids
_T5 281-288 FMAID:67257 denotes protein
_T6 281-288 FMAID:165447 denotes protein
_T7 293-305 FMAID:82737 denotes carbohydrate
_T8 293-305 FMAID:197276 denotes carbohydrate
_T9 626-633 FMAID:82801 denotes mannose
_T10 626-633 FMAID:196796 denotes mannose
_T11 658-665 FMAID:165447 denotes protein
_T12 658-665 FMAID:67257 denotes protein
_T13 927-936 FMAID:66644 denotes system in
_T14 927-936 FMAID:185472 denotes system in
_T15 950-959 FMAID:67498 denotes organisms
_T16 950-959 FMAID:166081 denotes organisms
_T17 1051-1056 FMAID:68646 denotes cells
_T18 1051-1056 FMAID:169002 denotes cells
_T19 1062-1070 FMAID:196740 denotes cysteine
_T20 1062-1070 FMAID:82751 denotes cysteine

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 213-222 http://purl.bioontology.org/ontology/NCBITAXON/74032 denotes antarctic
T2 229-241 http://purl.bioontology.org/ontology/NCBITAXON/106841 denotes Criptococcus
T3 229-241 http://purl.bioontology.org/ontology/NCBITAXON/107441 denotes Criptococcus
T4 229-241 http://purl.bioontology.org/ontology/NCBITAXON/561281 denotes Criptococcus
T5 229-249 http://purl.bioontology.org/ontology/NCBITAXON/100951 denotes Criptococcus albidus
T6 1051-1056 http://purl.bioontology.org/ontology/STY/T025 denotes cells
T7 1175-1180 http://purl.bioontology.org/ontology/STY/T096 denotes group

GO-BP

Id Subject Object Predicate Lexical cue
T1 33-41 http://purl.obolibrary.org/obo/GO_0031176 denotes xylanase
T2 137-145 http://purl.obolibrary.org/obo/GO_0031176 denotes xylanase
T3 789-797 http://purl.obolibrary.org/obo/GO_0031176 denotes xylanase
T4 1259-1267 http://purl.obolibrary.org/obo/GO_0031176 denotes xylanase
T5 453-466 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T6 498-511 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T7 579-592 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T8 838-851 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T9 683-695 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylated

GO-CC

Id Subject Object Predicate Lexical cue
T1 1051-1056 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 950-959 http://purl.obolibrary.org/obo/UBERON_0000062 denotes organisms

EDAM-topics

Id Subject Object Predicate Lexical cue
T1 61-66 http://edamontology.org/topic_0782 denotes yeast
T2 61-66 http://edamontology.org/topic_2817 denotes yeast
T3 70-87 http://edamontology.org/topic_0134 denotes mass spectrometry
T4 70-87 http://edamontology.org/topic_3520 denotes mass spectrometry
T5 181-192 http://edamontology.org/topic_0154 denotes amino acids
T6 223-228 http://edamontology.org/topic_0782 denotes yeast
T7 223-228 http://edamontology.org/topic_2817 denotes yeast
T8 281-288 http://edamontology.org/topic_0078 denotes protein
T9 293-305 http://edamontology.org/topic_0152 denotes carbohydrate
T10 326-344 http://edamontology.org/topic_3520 denotes mass spectrometric
T11 326-344 http://edamontology.org/topic_0134 denotes mass spectrometric
T12 658-665 http://edamontology.org/topic_0078 denotes protein
T13 1223-1228 http://edamontology.org/topic_0158 denotes motif

EDAM-DFO

Id Subject Object Predicate Lexical cue
T1 0-10 http://edamontology.org/data_0883 denotes Structural
T2 70-87 http://edamontology.org/data_2536 denotes mass spectrometry
T3 70-87 http://edamontology.org/data_3147 denotes mass spectrometry
T4 102-112 http://edamontology.org/data_0883 denotes structural
T5 281-288 http://edamontology.org/data_1467 denotes protein
T6 281-288 http://edamontology.org/format_1208 denotes protein
T7 326-344 http://edamontology.org/data_2536 denotes mass spectrometric
T8 389-398 http://edamontology.org/data_0883 denotes structure
T9 541-549 http://edamontology.org/operation_2945 denotes analysis
T10 634-643 http://edamontology.org/data_0883 denotes structure
T11 658-665 http://edamontology.org/format_1208 denotes protein
T12 658-665 http://edamontology.org/data_1467 denotes protein
T13 711-721 http://edamontology.org/data_0883 denotes structures
T14 727-731 http://edamontology.org/data_0006 denotes data
T15 1071-1079 http://edamontology.org/format_1996 denotes pairings
T16 1096-1106 http://edamontology.org/data_2611 denotes identified
T17 1096-1106 http://edamontology.org/data_0842 denotes identified
T18 1188-1192 http://edamontology.org/data_0006 denotes data

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 621-633 http://rdf.glycoinfo.org/glycan/G00028MO denotes high-mannose

GlyTouCan-IUPAC

Id Subject Object Predicate Lexical cue
GlycanIUPAC_T2 701-710 "http://rdf.glycoinfo.org/glycan/G64135HS" denotes GalGalNAc
GlycanIUPAC_T1 701-710 "http://rdf.glycoinfo.org/glycan/G44066MP" denotes GalGalNAc

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 950-959 http://purl.obolibrary.org/obo/UBERON_0000062 denotes organisms

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 950-959 Body_part denotes organisms http://purl.obolibrary.org/obo/UBERON_0000468