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bionlp-st-bb3-2016-training

Id Subject Object Predicate Lexical cue
T1 0-188 Title denotes Genotyping by restriction endonuclease analysis compared to phenotyping by antibiogram for typing methicillin-resistant Staphylococcus aureus strains colonizing patients in a nursing home.
T2 201-557 Paragraph denotes To assist in defining patterns of methicillin-resistant Staphylococcus aureus (MRSA) colonization in a skilled nursing facility (SNF), we compared genotyping by field-inversion gel electrophoresis (FIGE) restriction endonuclease digestion analysis (REA) with phenotyping by antibiogram for defining strain relatedness among MRSA isolates from SNF patients.
T3 566-652 Paragraph denotes Prospective screening culture surveillance for MRSA among patients in a community SNF.
T4 662-906 Paragraph denotes Nares and stool swab cultures were obtained from newly admitted patients and from all patients quarterly. MRSA were isolated by oxacillin screening agar. Antibiograms were determined by the disk-diffusion method, and genotyping was by FIGE REA.
T5 916-1197 Paragraph denotes It was shown that, among isolates with the same genotypes, many had different antibiograms; among isolates with the same antibiograms, many had different genotypes; and the discriminatory indices for isolates of MRSA by FIGE REA and by antibiogram were 0.56 and 0.78, respectively.
T6 1210-1682 Paragraph denotes Our study demonstrated that, in patients from one SNF, genotyping by FIGE REA identified two prevalent REA DNA types, but with variability of antibiogram patterns within each DNA type; the antibiogram also identified prevalent patterns with variability of REA DNA type within each antibiogram pattern. The discriminatory index of antibiograms alone, or of genotypes alone as determined by FIGE REA, was poor for strains of MRSA isolated from the SNF patients in our study.
T7 120-141 Bacteria denotes Staphylococcus aureus
T8 161-169 Habitat denotes patients
T9 175-187 Habitat denotes nursing home
T10 257-278 Bacteria denotes Staphylococcus aureus
T11 280-284 Bacteria denotes MRSA
T12 304-328 Habitat denotes skilled nursing facility
T13 330-333 Habitat denotes SNF
T14 525-529 Bacteria denotes MRSA
T15 544-556 Habitat denotes SNF patients
T16 544-547 Habitat denotes SNF
T17 613-617 Bacteria denotes MRSA
T18 624-632 Habitat denotes patients
T19 638-651 Habitat denotes community SNF
T20 662-667 Habitat denotes Nares
T21 662-667 Habitat denotes Nares
T22 672-677 Habitat denotes stool
T23 672-691 Habitat denotes stool swab cultures
T24 726-734 Habitat denotes patients
T25 748-756 Habitat denotes patients
T26 768-772 Bacteria denotes MRSA
T27 790-814 Habitat denotes oxacillin screening agar
T28 1128-1132 Bacteria denotes MRSA
T29 1242-1263 Habitat denotes patients from one SNF
T30 1260-1263 Habitat denotes SNF
T31 1633-1637 Bacteria denotes MRSA
T32 1656-1668 Habitat denotes SNF patients
T33 1656-1659 Habitat denotes SNF