PubMed:10704523
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/10704523","sourcedb":"PubMed","sourceid":"10704523","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/10704523","text":"Protein structure controls the processing of the N-linked oligosaccharides and glycosylphosphatidylinositol glycans of variant surface glycoproteins expressed in bloodstream form Trypanosoma brucei.\nThe variant surface glycoproteins (VSGs) of Trypanosoma brucei are a family of homodimeric glycoproteins that adopt similar shapes. An individual trypanosome expresses one VSG at a time in the form of a dense protective mono-layer on the plasma membrane. VSG genes are expressed from one of several polycistronic transcription units (expression sites) that contain several expression site associated genes. We used a transformed trypanosome clone expressing two different VSGs (VSG121 and VSG221) from the same expression site (that of VSG221) to establish whether the genotype of the trypanosome clone or the VSG structure itself controls VSG N-linked oligosaccharide and GPI anchor glycan processing. In-gel release and fluorescent labeling of N-linked oligosaccharides and on-blot fluorescent labeling and release of GPI anchor glycans were employed to compare the carbohydrate structures of VSG121 and VSG221 when expressed individually in wild-type trypanosome clones and when expressed together in the transformed trypanosome clone. The data indicate that the genotype of the trypanosome clone has no effect on the N-linked oligosaccharide structures present on a given VSG variant and only a minor effect on the GPI anchor glycans. The latter is most likely an effect of changes in inter-VSG packing when two VGSs are expressed simultaneously. Thus, N-linked oligosaccharide and GPI anchor processing enzymes appear to be constitutively expressed in bloodstream form African trypanosomes and the tertiary and quaternary structures of the VSG homodimers appear to dictate the processing and glycoform microheterogeneity of surface-expressed VSGs.","tracks":[{"project":"PubmedHPO","denotations":[{"id":"T1","span":{"begin":402,"end":407},"obj":"HP_0011088"}],"attributes":[{"subj":"T1","pred":"source","obj":"PubmedHPO"}]},{"project":"uniprot-human","denotations":[{"id":"T1","span":{"begin":872,"end":875},"obj":"http://www.uniprot.org/uniprot/P06744"},{"id":"T2","span":{"begin":1019,"end":1022},"obj":"http://www.uniprot.org/uniprot/P06744"},{"id":"T3","span":{"begin":1418,"end":1421},"obj":"http://www.uniprot.org/uniprot/P06744"},{"id":"T4","span":{"begin":1585,"end":1588},"obj":"http://www.uniprot.org/uniprot/P06744"}],"attributes":[{"subj":"T1","pred":"source","obj":"uniprot-human"},{"subj":"T2","pred":"source","obj":"uniprot-human"},{"subj":"T3","pred":"source","obj":"uniprot-human"},{"subj":"T4","pred":"source","obj":"uniprot-human"}]},{"project":"GlycoBiology-Epitope","denotations":[{"id":"PD-GlycoEpitope-B_T1","span":{"begin":933,"end":941},"obj":"id"},{"id":"PD-GlycoEpitope-B_T2","span":{"begin":995,"end":1003},"obj":"id"}],"attributes":[{"subj":"PD-GlycoEpitope-B_T1","pred":"source","obj":"GlycoBiology-Epitope"},{"subj":"PD-GlycoEpitope-B_T2","pred":"source","obj":"GlycoBiology-Epitope"}]},{"project":"GlycoBiology-FMA","denotations":[{"id":"_T1","span":{"begin":0,"end":7},"obj":"FMAID:165447"},{"id":"_T2","span":{"begin":0,"end":7},"obj":"FMAID:67257"},{"id":"_T3","span":{"begin":58,"end":74},"obj":"FMAID:82742"},{"id":"_T4","span":{"begin":58,"end":74},"obj":"FMAID:196731"},{"id":"_T5","span":{"begin":79,"end":107},"obj":"FMAID:82806"},{"id":"_T6","span":{"begin":79,"end":107},"obj":"FMAID:196801"},{"id":"_T7","span":{"begin":79,"end":107},"obj":"FMAID:85436"},{"id":"_T8","span":{"begin":79,"end":107},"obj":"FMAID:199790"},{"id":"_T9","span":{"begin":127,"end":134},"obj":"FMAID:146300"},{"id":"_T10","span":{"begin":127,"end":134},"obj":"FMAID:50594"},{"id":"_T11","span":{"begin":135,"end":148},"obj":"FMAID:167256"},{"id":"_T12","span":{"begin":135,"end":148},"obj":"FMAID:62925"},{"id":"_T13","span":{"begin":211,"end":218},"obj":"FMAID:146300"},{"id":"_T14","span":{"begin":211,"end":218},"obj":"FMAID:50594"},{"id":"_T15","span":{"begin":219,"end":232},"obj":"FMAID:167256"},{"id":"_T16","span":{"begin":219,"end":232},"obj":"FMAID:62925"},{"id":"_T17","span":{"begin":290,"end":303},"obj":"FMAID:167256"},{"id":"_T18","span":{"begin":290,"end":303},"obj":"FMAID:62925"},{"id":"_T19","span":{"begin":424,"end":452},"obj":"FMAID:165262"},{"id":"_T20","span":{"begin":424,"end":452},"obj":"FMAID:67269"},{"id":"_T21","span":{"begin":437,"end":443},"obj":"FMAID:162307"},{"id":"_T22","span":{"begin":437,"end":452},"obj":"FMAID:63841"},{"id":"_T23","span":{"begin":437,"end":452},"obj":"FMAID:164993"},{"id":"_T24","span":{"begin":437,"end":452},"obj":"FMAID:162306"},{"id":"_T25","span":{"begin":437,"end":452},"obj":"FMAID:166047"},{"id":"_T26","span":{"begin":437,"end":452},"obj":"FMAID:210691"},{"id":"_T27","span":{"begin":437,"end":452},"obj":"FMAID:66843"},{"id":"_T28","span":{"begin":458,"end":463},"obj":"FMAID:198663"},{"id":"_T29","span":{"begin":599,"end":604},"obj":"FMAID:198663"},{"id":"_T30","span":{"begin":852,"end":867},"obj":"FMAID:196731"},{"id":"_T31","span":{"begin":852,"end":867},"obj":"FMAID:82742"},{"id":"_T32","span":{"begin":954,"end":970},"obj":"FMAID:82742"},{"id":"_T33","span":{"begin":954,"end":970},"obj":"FMAID:196731"},{"id":"_T34","span":{"begin":1067,"end":1079},"obj":"FMAID:82737"},{"id":"_T35","span":{"begin":1067,"end":1079},"obj":"FMAID:197276"},{"id":"_T36","span":{"begin":1329,"end":1344},"obj":"FMAID:82742"},{"id":"_T37","span":{"begin":1329,"end":1344},"obj":"FMAID:196731"},{"id":"_T38","span":{"begin":1442,"end":1448},"obj":"FMAID:30332"},{"id":"_T39","span":{"begin":1442,"end":1448},"obj":"FMAID:171168"},{"id":"_T40","span":{"begin":1565,"end":1580},"obj":"FMAID:196731"},{"id":"_T41","span":{"begin":1565,"end":1580},"obj":"FMAID:82742"},{"id":"_T42","span":{"begin":1828,"end":1835},"obj":"FMAID:146300"},{"id":"_T43","span":{"begin":1828,"end":1835},"obj":"FMAID:50594"}],"namespaces":[{"prefix":"FMAID","uri":"http://purl.org/sig/ont/fma/fma"}],"attributes":[{"subj":"_T1","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T2","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T3","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T4","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T5","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T6","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T7","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T8","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T9","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T10","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T11","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T12","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T13","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T14","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T15","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T16","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T17","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T18","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T19","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T20","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T21","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T22","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T23","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T24","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T25","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T26","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T27","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T28","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T29","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T30","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T31","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T32","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T33","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T34","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T35","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T36","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T37","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T38","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T39","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T40","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T41","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T42","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T43","pred":"source","obj":"GlycoBiology-FMA"}]},{"project":"uniprot-mouse","denotations":[{"id":"T1","span":{"begin":872,"end":875},"obj":"http://www.uniprot.org/uniprot/Q8C675"},{"id":"T2","span":{"begin":1019,"end":1022},"obj":"http://www.uniprot.org/uniprot/Q8C675"},{"id":"T3","span":{"begin":1418,"end":1421},"obj":"http://www.uniprot.org/uniprot/Q8C675"},{"id":"T4","span":{"begin":1585,"end":1588},"obj":"http://www.uniprot.org/uniprot/Q8C675"}],"attributes":[{"subj":"T1","pred":"source","obj":"uniprot-mouse"},{"subj":"T2","pred":"source","obj":"uniprot-mouse"},{"subj":"T3","pred":"source","obj":"uniprot-mouse"},{"subj":"T4","pred":"source","obj":"uniprot-mouse"}]},{"project":"GlycoBiology-MAT","denotations":[{"id":"T1","span":{"begin":1442,"end":1448},"obj":"http://purl.obolibrary.org/obo/MAT_0000488"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-MAT"}]},{"project":"GlycoBiology-NCBITAXON","denotations":[{"id":"T1","span":{"begin":179,"end":190},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/5690"},{"id":"T2","span":{"begin":179,"end":190},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/71805"},{"id":"T3","span":{"begin":179,"end":190},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/5654"},{"id":"T4","span":{"begin":179,"end":190},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/56869"},{"id":"T5","span":{"begin":179,"end":197},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/5691"},{"id":"T6","span":{"begin":243,"end":254},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/5690"},{"id":"T7","span":{"begin":243,"end":254},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/71805"},{"id":"T8","span":{"begin":243,"end":254},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/56869"},{"id":"T9","span":{"begin":243,"end":254},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/5654"},{"id":"T10","span":{"begin":243,"end":261},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/5691"},{"id":"T11","span":{"begin":345,"end":356},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/5690"},{"id":"T12","span":{"begin":628,"end":639},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/5690"},{"id":"T13","span":{"begin":784,"end":795},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/5690"},{"id":"T14","span":{"begin":1153,"end":1164},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/5690"},{"id":"T15","span":{"begin":1219,"end":1230},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/5690"},{"id":"T16","span":{"begin":1281,"end":1292},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/5690"},{"id":"T17","span":{"begin":1681,"end":1693},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/5690"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T2","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T3","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T4","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T5","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T6","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T7","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T8","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T9","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T10","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T11","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T12","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T13","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T14","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T15","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T16","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T17","pred":"source","obj":"GlycoBiology-NCBITAXON"}]},{"project":"sentences","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":198},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":199,"end":330},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":331,"end":453},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":454,"end":605},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":606,"end":901},"obj":"Sentence"},{"id":"TextSentencer_T6","span":{"begin":902,"end":1237},"obj":"Sentence"},{"id":"TextSentencer_T7","span":{"begin":1238,"end":1437},"obj":"Sentence"},{"id":"TextSentencer_T8","span":{"begin":1438,"end":1549},"obj":"Sentence"},{"id":"TextSentencer_T9","span":{"begin":1550,"end":1851},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":198},"obj":"Sentence"},{"id":"T2","span":{"begin":199,"end":330},"obj":"Sentence"},{"id":"T3","span":{"begin":331,"end":453},"obj":"Sentence"},{"id":"T4","span":{"begin":454,"end":605},"obj":"Sentence"},{"id":"T5","span":{"begin":606,"end":901},"obj":"Sentence"},{"id":"T6","span":{"begin":902,"end":1237},"obj":"Sentence"},{"id":"T7","span":{"begin":1238,"end":1437},"obj":"Sentence"},{"id":"T8","span":{"begin":1438,"end":1549},"obj":"Sentence"},{"id":"T9","span":{"begin":1550,"end":1851},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":198},"obj":"Sentence"},{"id":"T2","span":{"begin":199,"end":330},"obj":"Sentence"},{"id":"T3","span":{"begin":331,"end":453},"obj":"Sentence"},{"id":"T4","span":{"begin":454,"end":605},"obj":"Sentence"},{"id":"T5","span":{"begin":606,"end":901},"obj":"Sentence"},{"id":"T6","span":{"begin":902,"end":1237},"obj":"Sentence"},{"id":"T7","span":{"begin":1238,"end":1437},"obj":"Sentence"},{"id":"T8","span":{"begin":1438,"end":1549},"obj":"Sentence"},{"id":"T9","span":{"begin":1550,"end":1851},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"TextSentencer_T1","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T2","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T3","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T4","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T5","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T6","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T7","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T8","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T9","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T8","pred":"source","obj":"sentences"},{"subj":"T9","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T8","pred":"source","obj":"sentences"},{"subj":"T9","pred":"source","obj":"sentences"}]},{"project":"GO-BP","denotations":[{"id":"T1","span":{"begin":458,"end":477},"obj":"http://purl.obolibrary.org/obo/GO_0010467"},{"id":"T2","span":{"begin":512,"end":525},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T3","span":{"begin":1008,"end":1029},"obj":"http://purl.obolibrary.org/obo/GO_0006507"},{"id":"T4","span":{"begin":1585,"end":1606},"obj":"http://purl.obolibrary.org/obo/GO_0006506"}],"attributes":[{"subj":"T1","pred":"source","obj":"GO-BP"},{"subj":"T2","pred":"source","obj":"GO-BP"},{"subj":"T3","pred":"source","obj":"GO-BP"},{"subj":"T4","pred":"source","obj":"GO-BP"}]},{"project":"GO-MF","denotations":[{"id":"T1","span":{"begin":876,"end":882},"obj":"http://purl.obolibrary.org/obo/GO_0043495"},{"id":"T2","span":{"begin":1023,"end":1029},"obj":"http://purl.obolibrary.org/obo/GO_0043495"},{"id":"T3","span":{"begin":1422,"end":1428},"obj":"http://purl.obolibrary.org/obo/GO_0043495"},{"id":"T4","span":{"begin":1589,"end":1595},"obj":"http://purl.obolibrary.org/obo/GO_0043495"}],"attributes":[{"subj":"T1","pred":"source","obj":"GO-MF"},{"subj":"T2","pred":"source","obj":"GO-MF"},{"subj":"T3","pred":"source","obj":"GO-MF"},{"subj":"T4","pred":"source","obj":"GO-MF"}]},{"project":"GO-CC","denotations":[{"id":"T1","span":{"begin":437,"end":452},"obj":"http://purl.obolibrary.org/obo/GO_0005886"},{"id":"T2","span":{"begin":444,"end":452},"obj":"http://purl.obolibrary.org/obo/GO_0016020"}],"attributes":[{"subj":"T1","pred":"source","obj":"GO-CC"},{"subj":"T2","pred":"source","obj":"GO-CC"}]},{"project":"EDAM-topics","denotations":[{"id":"T1","span":{"begin":0,"end":7},"obj":"http://edamontology.org/topic_0078"},{"id":"T2","span":{"begin":0,"end":17},"obj":"http://edamontology.org/topic_2814"},{"id":"T3","span":{"begin":0,"end":17},"obj":"http://edamontology.org/topic_0166"},{"id":"T4","span":{"begin":0,"end":17},"obj":"http://edamontology.org/topic_0698"},{"id":"T5","span":{"begin":0,"end":17},"obj":"http://edamontology.org/topic_3538"},{"id":"T6","span":{"begin":0,"end":17},"obj":"http://edamontology.org/topic_2826"},{"id":"T7","span":{"begin":0,"end":17},"obj":"http://edamontology.org/topic_0694"},{"id":"T8","span":{"begin":0,"end":17},"obj":"http://edamontology.org/topic_3542"},{"id":"T9","span":{"begin":135,"end":158},"obj":"http://edamontology.org/topic_0121"},{"id":"T10","span":{"begin":135,"end":158},"obj":"http://edamontology.org/topic_0108"},{"id":"T11","span":{"begin":458,"end":477},"obj":"http://edamontology.org/topic_0203"},{"id":"T12","span":{"begin":512,"end":525},"obj":"http://edamontology.org/topic_0110"},{"id":"T13","span":{"begin":512,"end":525},"obj":"http://edamontology.org/topic_3308"},{"id":"T14","span":{"begin":512,"end":525},"obj":"http://edamontology.org/topic_0203"},{"id":"T15","span":{"begin":512,"end":525},"obj":"http://edamontology.org/topic_3512"},{"id":"T16","span":{"begin":768,"end":776},"obj":"http://edamontology.org/topic_0625"},{"id":"T17","span":{"begin":1067,"end":1079},"obj":"http://edamontology.org/topic_0152"},{"id":"T18","span":{"begin":1265,"end":1273},"obj":"http://edamontology.org/topic_0625"}],"attributes":[{"subj":"T1","pred":"source","obj":"EDAM-topics"},{"subj":"T2","pred":"source","obj":"EDAM-topics"},{"subj":"T3","pred":"source","obj":"EDAM-topics"},{"subj":"T4","pred":"source","obj":"EDAM-topics"},{"subj":"T5","pred":"source","obj":"EDAM-topics"},{"subj":"T6","pred":"source","obj":"EDAM-topics"},{"subj":"T7","pred":"source","obj":"EDAM-topics"},{"subj":"T8","pred":"source","obj":"EDAM-topics"},{"subj":"T9","pred":"source","obj":"EDAM-topics"},{"subj":"T10","pred":"source","obj":"EDAM-topics"},{"subj":"T11","pred":"source","obj":"EDAM-topics"},{"subj":"T12","pred":"source","obj":"EDAM-topics"},{"subj":"T13","pred":"source","obj":"EDAM-topics"},{"subj":"T14","pred":"source","obj":"EDAM-topics"},{"subj":"T15","pred":"source","obj":"EDAM-topics"},{"subj":"T16","pred":"source","obj":"EDAM-topics"},{"subj":"T17","pred":"source","obj":"EDAM-topics"},{"subj":"T18","pred":"source","obj":"EDAM-topics"}]},{"project":"EDAM-DFO","denotations":[{"id":"T1","span":{"begin":0,"end":7},"obj":"http://edamontology.org/data_1467"},{"id":"T2","span":{"begin":0,"end":7},"obj":"http://edamontology.org/format_1208"},{"id":"T3","span":{"begin":0,"end":17},"obj":"http://edamontology.org/operation_0321"},{"id":"T4","span":{"begin":0,"end":17},"obj":"http://edamontology.org/data_1460"},{"id":"T5","span":{"begin":0,"end":17},"obj":"http://edamontology.org/operation_2488"},{"id":"T6","span":{"begin":0,"end":17},"obj":"http://edamontology.org/data_1481"},{"id":"T7","span":{"begin":0,"end":17},"obj":"http://edamontology.org/data_2992"},{"id":"T8","span":{"begin":0,"end":17},"obj":"http://edamontology.org/data_2878"},{"id":"T9","span":{"begin":8,"end":17},"obj":"http://edamontology.org/data_0883"},{"id":"T10","span":{"begin":31,"end":41},"obj":"http://edamontology.org/operation_2409"},{"id":"T11","span":{"begin":31,"end":41},"obj":"http://edamontology.org/operation_0004"},{"id":"T12","span":{"begin":768,"end":776},"obj":"http://edamontology.org/operation_3196"},{"id":"T13","span":{"begin":813,"end":822},"obj":"http://edamontology.org/data_0883"},{"id":"T14","span":{"begin":890,"end":900},"obj":"http://edamontology.org/operation_0004"},{"id":"T15","span":{"begin":890,"end":900},"obj":"http://edamontology.org/operation_2409"},{"id":"T16","span":{"begin":1067,"end":1090},"obj":"http://edamontology.org/data_1462"},{"id":"T17","span":{"begin":1080,"end":1090},"obj":"http://edamontology.org/data_0883"},{"id":"T18","span":{"begin":1242,"end":1246},"obj":"http://edamontology.org/data_0006"},{"id":"T19","span":{"begin":1265,"end":1273},"obj":"http://edamontology.org/operation_3196"},{"id":"T20","span":{"begin":1345,"end":1355},"obj":"http://edamontology.org/data_0883"},{"id":"T21","span":{"begin":1596,"end":1606},"obj":"http://edamontology.org/operation_0004"},{"id":"T22","span":{"begin":1596,"end":1606},"obj":"http://edamontology.org/operation_2409"},{"id":"T23","span":{"begin":1726,"end":1736},"obj":"http://edamontology.org/data_0883"},{"id":"T24","span":{"begin":1781,"end":1791},"obj":"http://edamontology.org/operation_2409"},{"id":"T25","span":{"begin":1781,"end":1791},"obj":"http://edamontology.org/operation_0004"}],"attributes":[{"subj":"T1","pred":"source","obj":"EDAM-DFO"},{"subj":"T2","pred":"source","obj":"EDAM-DFO"},{"subj":"T3","pred":"source","obj":"EDAM-DFO"},{"subj":"T4","pred":"source","obj":"EDAM-DFO"},{"subj":"T5","pred":"source","obj":"EDAM-DFO"},{"subj":"T6","pred":"source","obj":"EDAM-DFO"},{"subj":"T7","pred":"source","obj":"EDAM-DFO"},{"subj":"T8","pred":"source","obj":"EDAM-DFO"},{"subj":"T9","pred":"source","obj":"EDAM-DFO"},{"subj":"T10","pred":"source","obj":"EDAM-DFO"},{"subj":"T11","pred":"source","obj":"EDAM-DFO"},{"subj":"T12","pred":"source","obj":"EDAM-DFO"},{"subj":"T13","pred":"source","obj":"EDAM-DFO"},{"subj":"T14","pred":"source","obj":"EDAM-DFO"},{"subj":"T15","pred":"source","obj":"EDAM-DFO"},{"subj":"T16","pred":"source","obj":"EDAM-DFO"},{"subj":"T17","pred":"source","obj":"EDAM-DFO"},{"subj":"T18","pred":"source","obj":"EDAM-DFO"},{"subj":"T19","pred":"source","obj":"EDAM-DFO"},{"subj":"T20","pred":"source","obj":"EDAM-DFO"},{"subj":"T21","pred":"source","obj":"EDAM-DFO"},{"subj":"T22","pred":"source","obj":"EDAM-DFO"},{"subj":"T23","pred":"source","obj":"EDAM-DFO"},{"subj":"T24","pred":"source","obj":"EDAM-DFO"},{"subj":"T25","pred":"source","obj":"EDAM-DFO"}]},{"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":179,"end":197},"obj":"OrganismTaxon"},{"id":"T2","span":{"begin":243,"end":261},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"5691"},{"id":"A2","pred":"db_id","subj":"T2","obj":"5691"},{"subj":"T1","pred":"source","obj":"NCBITAXON"},{"subj":"T2","pred":"source","obj":"NCBITAXON"}]},{"project":"GlycoBiology-Motifs","denotations":[{"id":"T1","span":{"begin":872,"end":882},"obj":"http://rdf.glycoinfo.org/glycan/G00045MO"},{"id":"T2","span":{"begin":1019,"end":1029},"obj":"http://rdf.glycoinfo.org/glycan/G00045MO"},{"id":"T3","span":{"begin":1418,"end":1428},"obj":"http://rdf.glycoinfo.org/glycan/G00045MO"},{"id":"T4","span":{"begin":1585,"end":1595},"obj":"http://rdf.glycoinfo.org/glycan/G00045MO"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-Motifs"},{"subj":"T2","pred":"source","obj":"GlycoBiology-Motifs"},{"subj":"T3","pred":"source","obj":"GlycoBiology-Motifs"},{"subj":"T4","pred":"source","obj":"GlycoBiology-Motifs"}]},{"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":424,"end":429},"obj":"Body_part"},{"id":"T3","span":{"begin":437,"end":452},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0000119"},{"id":"A2","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0022303"},{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/GO_0005886"},{"subj":"T1","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T3","pred":"source","obj":"Anatomy-UBERON"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"PubmedHPO","color":"#93d5ec","default":true},{"id":"uniprot-human","color":"#ece893"},{"id":"GlycoBiology-Epitope","color":"#ce93ec"},{"id":"GlycoBiology-FMA","color":"#93ecb4"},{"id":"uniprot-mouse","color":"#ec9a93"},{"id":"GlycoBiology-MAT","color":"#93a5ec"},{"id":"GlycoBiology-NCBITAXON","color":"#bfec93"},{"id":"sentences","color":"#ec93d9"},{"id":"GO-BP","color":"#93ece5"},{"id":"GO-MF","color":"#eccb93"},{"id":"GO-CC","color":"#b193ec"},{"id":"EDAM-topics","color":"#93ec97"},{"id":"EDAM-DFO","color":"#ec93a9"},{"id":"NCBITAXON","color":"#93c3ec"},{"id":"GlycoBiology-Motifs","color":"#ddec93"},{"id":"Anatomy-UBERON","color":"#e193ec"}]}]}}