> top > docs > PubMed:10449776 > annotations

PubMed:10449776 JSONTXT

Annnotations TAB JSON ListView MergeView

PMID_GLOBAL

Id Subject Object Predicate Lexical cue mondo_id
T1 28-50 DiseaseOrPhenotypicFeature denotes AIDS-related lymphomas 0018842
T2 73-77 DiseaseOrPhenotypicFeature denotes AIDS 0012268
T3 86-108 DiseaseOrPhenotypicFeature denotes non-Hodgkin's lymphoma 0018908
T4 110-114 DiseaseOrPhenotypicFeature denotes AIDS 0012268
T5 115-118 DiseaseOrPhenotypicFeature denotes NHL 0018908
T6 212-216 DiseaseOrPhenotypicFeature denotes AIDS 0012268
T7 217-220 DiseaseOrPhenotypicFeature denotes NHL 0018908
T8 269-274 DiseaseOrPhenotypicFeature denotes tumor 0005070
T9 379-383 DiseaseOrPhenotypicFeature denotes AIDS 0012268
T10 384-387 DiseaseOrPhenotypicFeature denotes NHL 0018908
T11 399-421 DiseaseOrPhenotypicFeature denotes immunoblastic lymphoma 0022037
T12 436-440 DiseaseOrPhenotypicFeature denotes AIDS 0012268
T13 535-539 DiseaseOrPhenotypicFeature denotes AIDS 0012268
T14 619-623 DiseaseOrPhenotypicFeature denotes AIDS 0012268
T15 678-693 DiseaseOrPhenotypicFeature denotes T cell leukemia 0005525
T16 694-702 DiseaseOrPhenotypicFeature denotes lymphoma 0003659|0003660|0005062
T19 781-786 DiseaseOrPhenotypicFeature denotes tumor 0005070
T20 844-848 DiseaseOrPhenotypicFeature denotes AIDS 0012268
T21 849-852 DiseaseOrPhenotypicFeature denotes NHL 0018908
T22 904-908 DiseaseOrPhenotypicFeature denotes AIDS 0012268
T23 972-977 DiseaseOrPhenotypicFeature denotes tumor 0005070
T24 987-991 DiseaseOrPhenotypicFeature denotes AIDS 0012268
T25 1056-1068 DiseaseOrPhenotypicFeature denotes Hyperplastic 0005043
T26 1385-1389 DiseaseOrPhenotypicFeature denotes AIDS 0012268

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 86-108 HP_0012539 denotes non-Hodgkin's lymphoma
T2 90-108 HP_0012189 denotes Hodgkin's lymphoma
T3 100-108 HP_0002665 denotes lymphoma
T4 185-191 HP_0002664 denotes tumors
T5 269-274 HP_0002664 denotes tumor
T6 413-421 HP_0002665 denotes lymphoma
T7 678-702 HP_0005517 denotes T cell leukemia/lymphoma
T8 685-693 HP_0001909 denotes leukemia
T9 694-702 HP_0002665 denotes lymphoma
T10 781-786 HP_0002664 denotes tumor
T11 914-920 HP_0002664 denotes tumors
T12 972-977 HP_0002664 denotes tumor

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-13 DNA denotes TCL1 oncogene
T2 256-265 DNA denotes oncogenes
T3 269-291 DNA denotes tumor-suppressor genes
T4 507-520 DNA denotes TCL1 oncogene
T5 535-570 DNA denotes AIDS IBLP-associated cDNA fragments
T6 639-643 protein denotes TCL1
T7 774-792 cell_line denotes B cell tumor lines
T8 803-807 protein denotes TCL1
T9 867-871 protein denotes TCL1
T10 931-935 protein denotes TCL1
T11 1111-1115 protein denotes TCL1
T12 1138-1157 cell_type denotes mantle zone B cells
T13 1170-1196 cell_type denotes interfollicular zone cells
T14 1206-1229 cell_type denotes follicle-center B cells
T15 1231-1243 cell_type denotes centroblasts
T16 1248-1259 cell_type denotes centrocytes
T17 1309-1313 protein denotes TCL1
T18 1359-1368 DNA denotes oncogenes
T19 1429-1433 protein denotes TCL1
T20 1448-1477 cell_type denotes quiescent mantle zone B cells
T21 1509-1543 cell_type denotes germinal center follicular B cells
T22 1591-1596 protein denotes BCL-2
T23 1623-1647 cell_type denotes nonproliferating B cells
T24 1662-1666 protein denotes TCL1
T25 1694-1720 cell_type denotes naïve preactivated B cells

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
10449776-0#0#4#gene8115 0-4 gene8115 denotes TCL1
10449776-0#0#4#gene9623 0-4 gene9623 denotes TCL1
10449776-0#28#50#diseaseC0085090 28-50 diseaseC0085090 denotes AIDS-related lymphomas
10449776-5#9#13#gene8115 639-643 gene8115 denotes TCL1
10449776-5#9#13#gene9623 639-643 gene9623 denotes TCL1
10449776-5#9#13#gene8115 639-643 gene8115 denotes TCL1
10449776-5#9#13#gene9623 639-643 gene9623 denotes TCL1
10449776-5#48#63#diseaseC0023492 678-693 diseaseC0023492 denotes T cell leukemia
10449776-5#64#72#diseaseC0024299 694-702 diseaseC0024299 denotes lymphoma
10449776-9#55#59#gene8115 1111-1115 gene8115 denotes TCL1
10449776-9#55#59#gene9623 1111-1115 gene9623 denotes TCL1
10449776-9#0#23#diseaseC0340782 1056-1079 diseaseC0340782 denotes Hyperplastic lymph node
0#4#gene811528#50#diseaseC0085090 10449776-0#0#4#gene8115 10449776-0#28#50#diseaseC0085090 associated_with TCL1,AIDS-related lymphomas
0#4#gene962328#50#diseaseC0085090 10449776-0#0#4#gene9623 10449776-0#28#50#diseaseC0085090 associated_with TCL1,AIDS-related lymphomas
9#13#gene811548#63#diseaseC0023492 10449776-5#9#13#gene8115 10449776-5#48#63#diseaseC0023492 associated_with TCL1,T cell leukemia
9#13#gene811564#72#diseaseC0024299 10449776-5#9#13#gene8115 10449776-5#64#72#diseaseC0024299 associated_with TCL1,lymphoma
9#13#gene962348#63#diseaseC0023492 10449776-5#9#13#gene9623 10449776-5#48#63#diseaseC0023492 associated_with TCL1,T cell leukemia
9#13#gene962364#72#diseaseC0024299 10449776-5#9#13#gene9623 10449776-5#64#72#diseaseC0024299 associated_with TCL1,lymphoma
9#13#gene811548#63#diseaseC0023492 10449776-5#9#13#gene8115 10449776-5#48#63#diseaseC0023492 associated_with TCL1,T cell leukemia
9#13#gene811564#72#diseaseC0024299 10449776-5#9#13#gene8115 10449776-5#64#72#diseaseC0024299 associated_with TCL1,lymphoma
9#13#gene962348#63#diseaseC0023492 10449776-5#9#13#gene9623 10449776-5#48#63#diseaseC0023492 associated_with TCL1,T cell leukemia
9#13#gene962364#72#diseaseC0024299 10449776-5#9#13#gene9623 10449776-5#64#72#diseaseC0024299 associated_with TCL1,lymphoma
55#59#gene81150#23#diseaseC0340782 10449776-9#55#59#gene8115 10449776-9#0#23#diseaseC0340782 associated_with TCL1,Hyperplastic lymph node
55#59#gene96230#23#diseaseC0340782 10449776-9#55#59#gene9623 10449776-9#0#23#diseaseC0340782 associated_with TCL1,Hyperplastic lymph node

genia-medco-coref

Id Subject Object Predicate Lexical cue
C6 0-13 NP denotes TCL1 oncogene
C22 28-33 NP denotes AIDS-
C23 73-78 NP denotes AIDS-
C1 73-119 NP denotes AIDS-related non-Hodgkin's lymphoma (AIDS NHL)
C2 212-220 NP denotes AIDS NHL
C4 379-446 NP denotes AIDS NHL designated immunoblastic lymphoma plasmacytoid (AIDS IBLP)
C7 503-520 NP denotes the TCL1 oncogene
C5 535-545 NP denotes AIDS IBLP-
C20 630-654 NP denotes Aberrant TCL1 expression
C21 720-723 NP denotes its
C9 803-818 NP denotes TCL1 expression
C10 844-852 NP denotes AIDS NHL
C17 867-871 NP denotes TCL1
C19 1309-1313 NP denotes TCL1
C15 1385-1394 NP denotes AIDS IBLP
C18 1662-1666 NP denotes TCL1
R1 C23 C22 coref-ident AIDS-,AIDS-
R2 C2 C1 coref-ident AIDS NHL,AIDS-related non-Hodgkin's lymphoma (AIDS NHL)
R3 C7 C6 coref-ident the TCL1 oncogene,TCL1 oncogene
R4 C5 C4 coref-ident AIDS IBLP-,AIDS NHL designated immunoblastic lymphoma plasmacytoid (AIDS IBLP)
R5 C21 C20 coref-pron its,Aberrant TCL1 expression
R6 C9 C20 coref-other TCL1 expression,Aberrant TCL1 expression
R7 C10 C2 coref-ident AIDS NHL,AIDS NHL
R8 C19 C17 coref-ident TCL1,TCL1
R9 C15 C5 coref-ident AIDS IBLP,AIDS IBLP-
R10 C18 C19 coref-ident TCL1,TCL1

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-72 Sentence denotes TCL1 oncogene expression in AIDS-related lymphomas and lymphoid tissues.
S2 73-192 Sentence denotes AIDS-related non-Hodgkin's lymphoma (AIDS NHL) comprises a diverse and heterogeneous group of high-grade B cell tumors.
S3 193-333 Sentence denotes Certain classes of AIDS NHL are associated with alterations in oncogenes or tumor-suppressor genes or infections by oncogenic herpesviruses.
S4 334-488 Sentence denotes However, the clinically significant class of AIDS NHL designated immunoblastic lymphoma plasmacytoid (AIDS IBLP) lacks any consistent genetic alterations.
S5 489-629 Sentence denotes We identified the TCL1 oncogene from a set of AIDS IBLP-associated cDNA fragments generated by subtractive hybridization with non-AIDS IBLP.
S6 630-793 Sentence denotes Aberrant TCL1 expression has been implicated in T cell leukemia/lymphoma development, and its expression also has been seen in many established B cell tumor lines.
S7 794-853 Sentence denotes However, TCL1 expression has not been reported in AIDS NHL.
S8 854-930 Sentence denotes We find that TCL1 is expressed in the majority of AIDS IBLP tumors examined.
S9 931-1055 Sentence denotes TCL1 protein expression is restricted to tumor cells in AIDS IBLP tissue samples analyzed with immunohistochemical staining.
S10 1056-1284 Sentence denotes Hyperplastic lymph node and tonsil also exhibit strong TCL1 protein expression in mantle zone B cells and in rare interfollicular zone cells, whereas follicle-center B cells (centroblasts and centrocytes) show weaker expression.
S11 1285-1395 Sentence denotes These results establish TCL1 as the most prevalent of all of the surveyed oncogenes associated with AIDS IBLP.
S12 1396-1597 Sentence denotes They also indicate that abundant TCL1 expression in quiescent mantle zone B cells is down-regulated in activated germinal center follicular B cells in parallel to the known expression pattern of BCL-2.
S13 1598-1736 Sentence denotes High-level expression in nonproliferating B cells suggests that TCL1 may function in protecting naïve preactivated B cells from apoptosis.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-13 DNA_domain_or_region denotes TCL1 oncogene
T2 28-50 tissue denotes AIDS-related lymphomas
T3 55-71 tissue denotes lymphoid tissues
T4 73-108 other_name denotes AIDS-related non-Hodgkin's lymphoma
T5 110-118 other_name denotes AIDS NHL
T6 167-191 tissue denotes high-grade B cell tumors
T7 212-220 other_name denotes AIDS NHL
T8 256-265 DNA_family_or_group denotes oncogenes
T9 269-291 DNA_family_or_group denotes tumor-suppressor genes
T10 309-332 virus denotes oncogenic herpesviruses
T11 379-387 other_name denotes AIDS NHL
T12 399-434 other_name denotes immunoblastic lymphoma plasmacytoid
T13 436-445 other_name denotes AIDS IBLP
T14 507-520 DNA_domain_or_region denotes TCL1 oncogene
T15 535-544 other_name denotes AIDS IBLP
T16 584-609 other_name denotes subtractive hybridization
T17 615-619 other_name denotes non-
T18 619-628 other_name denotes AIDS IBLP
T19 639-643 protein_molecule denotes TCL1
T20 678-714 other_name denotes T cell leukemia/lymphoma development
T21 774-792 cell_line denotes B cell tumor lines
T22 803-807 protein_molecule denotes TCL1
T23 844-852 other_name denotes AIDS NHL
T24 867-871 protein_molecule denotes TCL1
T25 904-913 other_name denotes AIDS IBLP
T26 931-935 protein_molecule denotes TCL1
T27 987-996 other_name denotes AIDS IBLP
T28 1026-1054 other_name denotes immunohistochemical staining
T29 1056-1079 body_part denotes Hyperplastic lymph node
T30 1084-1090 body_part denotes tonsil
T31 1111-1115 protein_molecule denotes TCL1
T32 1138-1157 cell_type denotes mantle zone B cells
T33 1170-1196 cell_type denotes interfollicular zone cells
T34 1206-1229 cell_type denotes follicle-center B cells
T35 1231-1243 cell_type denotes centroblasts
T36 1248-1259 cell_type denotes centrocytes
T37 1309-1313 protein_molecule denotes TCL1
T38 1359-1368 DNA_family_or_group denotes oncogenes
T39 1385-1394 other_name denotes AIDS IBLP
T40 1429-1433 protein_molecule denotes TCL1
T41 1448-1457 cell_type denotes quiescent
T42 1458-1477 cell_type denotes mantle zone B cells
T43 1509-1543 cell_type denotes germinal center follicular B cells
T44 1591-1596 protein_molecule denotes BCL-2
T45 1623-1647 cell_type denotes nonproliferating B cells
T46 1662-1666 protein_molecule denotes TCL1
T47 1694-1720 cell_type denotes naïve preactivated B cells
T48 1726-1735 other_name denotes apoptosis

DisGeNET

Id Subject Object Predicate Lexical cue
T0 0-4 gene:9623 denotes TCL1
T1 28-50 disease:C0085090 denotes AIDS-related lymphomas
T2 0-4 gene:8115 denotes TCL1
T3 28-50 disease:C0085090 denotes AIDS-related lymphomas
R1 T0 T1 associated_with TCL1,AIDS-related lymphomas
R2 T2 T3 associated_with TCL1,AIDS-related lymphomas