PubMed:10449169 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/10449169","sourcedb":"PubMed","sourceid":"10449169","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/10449169","text":"Dendritic cells and the pathogenesis of rheumatoid arthritis.\nRheumatoid arthritis (RA) is a chronic autoimmune inflammatory disease in which unknown arthrogenic autoantigen is presented to CD4+ T cells. The strong association of the disease with an epitope within the HLA-DR chain shared between various alleles of HLA-DR4 and DR1 emphasizes the importance of antigen presentation. This immune response predominantly occurs in the synovial tissue and fluid of the joints and autoreactive T cells are readily demonstrable in both the synovial compartment and blood. Circulating dendritic cells (DC) are phenotypically and functionally identical with normal peripheral blood (PB) DC. In the synovial tissue, fully differentiated perivascular DC are found in close association with T cells and with B cell follicles, sometimes containing follicular DC. These perivascular DC migrate across the activated endothelium from blood and receive differentiative signals within the joint from monocyte-derived cytokines and CD40-ligand+ T cells. In the SF, DC manifest an intermediate phenotype, similar to that of monocyte-derived DC in vitro. Like a delayed-type hypersensitivity response, the rheumatoid synovium represents an effector site. DC at many effector sites have a characteristic pattern of infiltration and differentiation. It is important to note that the effector response is not self-limiting in RA autoimmune inflammation. In this article, we argue that the presentation of self-antigen by DC and by autoantibody-producing B cells is critical for the perpetuation of the autoimmune response. Permanently arresting this ongoing immune response with either pharmaceutical agents or immunotherapy is a major challenge for immunology.","tracks":[{"project":"genia-medco-coref","denotations":[{"id":"C20","span":{"begin":0,"end":15},"obj":"NP"},{"id":"C24","span":{"begin":62,"end":87},"obj":"NP"},{"id":"C21","span":{"begin":91,"end":132},"obj":"NP"},{"id":"C22","span":{"begin":136,"end":141},"obj":"NP"},{"id":"C23","span":{"begin":230,"end":241},"obj":"NP"},{"id":"C26","span":{"begin":428,"end":447},"obj":"NP"},{"id":"C5","span":{"begin":566,"end":598},"obj":"NP"},{"id":"C30","span":{"begin":650,"end":681},"obj":"NP"},{"id":"C27","span":{"begin":686,"end":705},"obj":"NP"},{"id":"C11","span":{"begin":707,"end":743},"obj":"NP"},{"id":"C10","span":{"begin":851,"end":872},"obj":"NP"},{"id":"C13","span":{"begin":1047,"end":1049},"obj":"NP"},{"id":"C28","span":{"begin":1059,"end":1084},"obj":"NP"},{"id":"C29","span":{"begin":1097,"end":1101},"obj":"NP"},{"id":"C18","span":{"begin":1235,"end":1237},"obj":"NP"},{"id":"C19","span":{"begin":1498,"end":1500},"obj":"NP"}],"relations":[{"id":"R1","pred":"coref-relat","subj":"C22","obj":"C21"},{"id":"R2","pred":"coref-ident","subj":"C23","obj":"C24"},{"id":"R3","pred":"coref-other","subj":"C5","obj":"C20"},{"id":"R4","pred":"coref-ident","subj":"C30","obj":"C5"},{"id":"R5","pred":"coref-ident","subj":"C27","obj":"C26"},{"id":"R6","pred":"coref-ident","subj":"C10","obj":"C11"},{"id":"R7","pred":"coref-ident","subj":"C13","obj":"C20"},{"id":"R8","pred":"coref-pron","subj":"C29","obj":"C28"},{"id":"R9","pred":"coref-ident","subj":"C18","obj":"C13"},{"id":"R10","pred":"coref-ident","subj":"C19","obj":"C18"}],"attributes":[{"subj":"C20","pred":"source","obj":"genia-medco-coref"},{"subj":"C24","pred":"source","obj":"genia-medco-coref"},{"subj":"C21","pred":"source","obj":"genia-medco-coref"},{"subj":"C22","pred":"source","obj":"genia-medco-coref"},{"subj":"C23","pred":"source","obj":"genia-medco-coref"},{"subj":"C26","pred":"source","obj":"genia-medco-coref"},{"subj":"C5","pred":"source","obj":"genia-medco-coref"},{"subj":"C30","pred":"source","obj":"genia-medco-coref"},{"subj":"C27","pred":"source","obj":"genia-medco-coref"},{"subj":"C11","pred":"source","obj":"genia-medco-coref"},{"subj":"C10","pred":"source","obj":"genia-medco-coref"},{"subj":"C13","pred":"source","obj":"genia-medco-coref"},{"subj":"C28","pred":"source","obj":"genia-medco-coref"},{"subj":"C29","pred":"source","obj":"genia-medco-coref"},{"subj":"C18","pred":"source","obj":"genia-medco-coref"},{"subj":"C19","pred":"source","obj":"genia-medco-coref"}]},{"project":"PubmedHPO","denotations":[{"id":"T1","span":{"begin":62,"end":82},"obj":"HP_0001370"},{"id":"T2","span":{"begin":73,"end":82},"obj":"HP_0001369"},{"id":"T3","span":{"begin":101,"end":111},"obj":"HP_0002960"},{"id":"T4","span":{"begin":1406,"end":1416},"obj":"HP_0002960"},{"id":"T5","span":{"begin":1579,"end":1589},"obj":"HP_0002960"}],"attributes":[{"subj":"T1","pred":"source","obj":"PubmedHPO"},{"subj":"T2","pred":"source","obj":"PubmedHPO"},{"subj":"T3","pred":"source","obj":"PubmedHPO"},{"subj":"T4","pred":"source","obj":"PubmedHPO"},{"subj":"T5","pred":"source","obj":"PubmedHPO"}]},{"project":"jnlpba-st-training","denotations":[{"id":"T1","span":{"begin":0,"end":15},"obj":"cell_type"},{"id":"T2","span":{"begin":150,"end":173},"obj":"protein"},{"id":"T3","span":{"begin":190,"end":202},"obj":"cell_type"},{"id":"T4","span":{"begin":250,"end":257},"obj":"protein"},{"id":"T5","span":{"begin":269,"end":281},"obj":"protein"},{"id":"T6","span":{"begin":316,"end":323},"obj":"protein"},{"id":"T7","span":{"begin":328,"end":331},"obj":"protein"},{"id":"T8","span":{"begin":476,"end":496},"obj":"cell_type"},{"id":"T9","span":{"begin":566,"end":593},"obj":"cell_type"},{"id":"T10","span":{"begin":595,"end":597},"obj":"cell_type"},{"id":"T11","span":{"begin":650,"end":681},"obj":"cell_type"},{"id":"T12","span":{"begin":728,"end":743},"obj":"cell_type"},{"id":"T13","span":{"begin":780,"end":787},"obj":"cell_type"},{"id":"T14","span":{"begin":797,"end":813},"obj":"cell_type"},{"id":"T15","span":{"begin":836,"end":849},"obj":"cell_type"},{"id":"T16","span":{"begin":857,"end":872},"obj":"cell_type"},{"id":"T17","span":{"begin":983,"end":1009},"obj":"protein"},{"id":"T18","span":{"begin":1014,"end":1034},"obj":"cell_type"},{"id":"T19","span":{"begin":1047,"end":1049},"obj":"cell_type"},{"id":"T20","span":{"begin":1105,"end":1124},"obj":"cell_type"},{"id":"T21","span":{"begin":1482,"end":1494},"obj":"protein"},{"id":"T22","span":{"begin":1498,"end":1500},"obj":"cell_type"},{"id":"T23","span":{"begin":1508,"end":1538},"obj":"cell_type"}],"attributes":[{"subj":"T1","pred":"source","obj":"jnlpba-st-training"},{"subj":"T2","pred":"source","obj":"jnlpba-st-training"},{"subj":"T3","pred":"source","obj":"jnlpba-st-training"},{"subj":"T4","pred":"source","obj":"jnlpba-st-training"},{"subj":"T5","pred":"source","obj":"jnlpba-st-training"},{"subj":"T6","pred":"source","obj":"jnlpba-st-training"},{"subj":"T7","pred":"source","obj":"jnlpba-st-training"},{"subj":"T8","pred":"source","obj":"jnlpba-st-training"},{"subj":"T9","pred":"source","obj":"jnlpba-st-training"},{"subj":"T10","pred":"source","obj":"jnlpba-st-training"},{"subj":"T11","pred":"source","obj":"jnlpba-st-training"},{"subj":"T12","pred":"source","obj":"jnlpba-st-training"},{"subj":"T13","pred":"source","obj":"jnlpba-st-training"},{"subj":"T14","pred":"source","obj":"jnlpba-st-training"},{"subj":"T15","pred":"source","obj":"jnlpba-st-training"},{"subj":"T16","pred":"source","obj":"jnlpba-st-training"},{"subj":"T17","pred":"source","obj":"jnlpba-st-training"},{"subj":"T18","pred":"source","obj":"jnlpba-st-training"},{"subj":"T19","pred":"source","obj":"jnlpba-st-training"},{"subj":"T20","pred":"source","obj":"jnlpba-st-training"},{"subj":"T21","pred":"source","obj":"jnlpba-st-training"},{"subj":"T22","pred":"source","obj":"jnlpba-st-training"},{"subj":"T23","pred":"source","obj":"jnlpba-st-training"}]},{"project":"pubmed-sentences-benchmark","denotations":[{"id":"S1","span":{"begin":0,"end":61},"obj":"Sentence"},{"id":"S2","span":{"begin":62,"end":203},"obj":"Sentence"},{"id":"S3","span":{"begin":204,"end":382},"obj":"Sentence"},{"id":"S4","span":{"begin":383,"end":565},"obj":"Sentence"},{"id":"S5","span":{"begin":566,"end":682},"obj":"Sentence"},{"id":"S6","span":{"begin":683,"end":850},"obj":"Sentence"},{"id":"S7","span":{"begin":851,"end":1035},"obj":"Sentence"},{"id":"S8","span":{"begin":1036,"end":1134},"obj":"Sentence"},{"id":"S9","span":{"begin":1135,"end":1234},"obj":"Sentence"},{"id":"S10","span":{"begin":1235,"end":1327},"obj":"Sentence"},{"id":"S11","span":{"begin":1328,"end":1430},"obj":"Sentence"},{"id":"S12","span":{"begin":1431,"end":1599},"obj":"Sentence"},{"id":"S13","span":{"begin":1600,"end":1738},"obj":"Sentence"}],"attributes":[{"subj":"S1","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S2","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S3","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S4","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S5","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S6","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S7","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S8","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S9","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S10","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S11","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S12","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S13","pred":"source","obj":"pubmed-sentences-benchmark"}]},{"project":"GENIAcorpus","denotations":[{"id":"T1","span":{"begin":0,"end":15},"obj":"cell_type"},{"id":"T2","span":{"begin":62,"end":82},"obj":"other_name"},{"id":"T3","span":{"begin":84,"end":86},"obj":"other_name"},{"id":"T4","span":{"begin":93,"end":132},"obj":"other_name"},{"id":"T5","span":{"begin":150,"end":173},"obj":"protein_molecule"},{"id":"T6","span":{"begin":190,"end":193},"obj":"protein_molecule"},{"id":"T7","span":{"begin":250,"end":257},"obj":"protein_domain_or_region"},{"id":"T8","span":{"begin":269,"end":281},"obj":"protein_subunit"},{"id":"T9","span":{"begin":316,"end":323},"obj":"protein_molecule"},{"id":"T10","span":{"begin":328,"end":331},"obj":"protein_molecule"},{"id":"T11","span":{"begin":361,"end":381},"obj":"other_name"},{"id":"T12","span":{"begin":432,"end":447},"obj":"tissue"},{"id":"T13","span":{"begin":476,"end":488},"obj":"cell_type"},{"id":"T14","span":{"begin":489,"end":496},"obj":"cell_type"},{"id":"T15","span":{"begin":534,"end":554},"obj":"tissue"},{"id":"T16","span":{"begin":559,"end":564},"obj":"tissue"},{"id":"T17","span":{"begin":566,"end":593},"obj":"cell_type"},{"id":"T18","span":{"begin":595,"end":597},"obj":"cell_type"},{"id":"T19","span":{"begin":650,"end":673},"obj":"tissue"},{"id":"T20","span":{"begin":675,"end":677},"obj":"tissue"},{"id":"T21","span":{"begin":679,"end":681},"obj":"cell_type"},{"id":"T22","span":{"begin":690,"end":705},"obj":"tissue"},{"id":"T23","span":{"begin":728,"end":743},"obj":"cell_type"},{"id":"T24","span":{"begin":780,"end":787},"obj":"cell_type"},{"id":"T25","span":{"begin":797,"end":813},"obj":"cell_type"},{"id":"T26","span":{"begin":836,"end":849},"obj":"cell_type"},{"id":"T27","span":{"begin":857,"end":872},"obj":"cell_type"},{"id":"T28","span":{"begin":892,"end":913},"obj":"tissue"},{"id":"T29","span":{"begin":919,"end":924},"obj":"tissue"},{"id":"T30","span":{"begin":983,"end":1009},"obj":"protein_family_or_group"},{"id":"T31","span":{"begin":1014,"end":1018},"obj":"protein_molecule"},{"id":"T32","span":{"begin":1027,"end":1034},"obj":"cell_type"},{"id":"T33","span":{"begin":1047,"end":1049},"obj":"cell_type"},{"id":"T34","span":{"begin":1105,"end":1124},"obj":"cell_type"},{"id":"T35","span":{"begin":1142,"end":1180},"obj":"other_name"},{"id":"T36","span":{"begin":1186,"end":1205},"obj":"tissue"},{"id":"T37","span":{"begin":1294,"end":1306},"obj":"other_name"},{"id":"T38","span":{"begin":1311,"end":1326},"obj":"other_name"},{"id":"T39","span":{"begin":1403,"end":1405},"obj":"other_name"},{"id":"T40","span":{"begin":1482,"end":1494},"obj":"protein_molecule"},{"id":"T41","span":{"begin":1498,"end":1500},"obj":"cell_type"},{"id":"T42","span":{"begin":1508,"end":1530},"obj":"cell_type"},{"id":"T43","span":{"begin":1531,"end":1538},"obj":"cell_type"},{"id":"T44","span":{"begin":1579,"end":1598},"obj":"other_name"},{"id":"T45","span":{"begin":1663,"end":1684},"obj":"other_organic_compound"},{"id":"T46","span":{"begin":1688,"end":1701},"obj":"other_name"},{"id":"T47","span":{"begin":1727,"end":1737},"obj":"other_name"}],"attributes":[{"subj":"T1","pred":"source","obj":"GENIAcorpus"},{"subj":"T2","pred":"source","obj":"GENIAcorpus"},{"subj":"T3","pred":"source","obj":"GENIAcorpus"},{"subj":"T4","pred":"source","obj":"GENIAcorpus"},{"subj":"T5","pred":"source","obj":"GENIAcorpus"},{"subj":"T6","pred":"source","obj":"GENIAcorpus"},{"subj":"T7","pred":"source","obj":"GENIAcorpus"},{"subj":"T8","pred":"source","obj":"GENIAcorpus"},{"subj":"T9","pred":"source","obj":"GENIAcorpus"},{"subj":"T10","pred":"source","obj":"GENIAcorpus"},{"subj":"T11","pred":"source","obj":"GENIAcorpus"},{"subj":"T12","pred":"source","obj":"GENIAcorpus"},{"subj":"T13","pred":"source","obj":"GENIAcorpus"},{"subj":"T14","pred":"source","obj":"GENIAcorpus"},{"subj":"T15","pred":"source","obj":"GENIAcorpus"},{"subj":"T16","pred":"source","obj":"GENIAcorpus"},{"subj":"T17","pred":"source","obj":"GENIAcorpus"},{"subj":"T18","pred":"source","obj":"GENIAcorpus"},{"subj":"T19","pred":"source","obj":"GENIAcorpus"},{"subj":"T20","pred":"source","obj":"GENIAcorpus"},{"subj":"T21","pred":"source","obj":"GENIAcorpus"},{"subj":"T22","pred":"source","obj":"GENIAcorpus"},{"subj":"T23","pred":"source","obj":"GENIAcorpus"},{"subj":"T24","pred":"source","obj":"GENIAcorpus"},{"subj":"T25","pred":"source","obj":"GENIAcorpus"},{"subj":"T26","pred":"source","obj":"GENIAcorpus"},{"subj":"T27","pred":"source","obj":"GENIAcorpus"},{"subj":"T28","pred":"source","obj":"GENIAcorpus"},{"subj":"T29","pred":"source","obj":"GENIAcorpus"},{"subj":"T30","pred":"source","obj":"GENIAcorpus"},{"subj":"T31","pred":"source","obj":"GENIAcorpus"},{"subj":"T32","pred":"source","obj":"GENIAcorpus"},{"subj":"T33","pred":"source","obj":"GENIAcorpus"},{"subj":"T34","pred":"source","obj":"GENIAcorpus"},{"subj":"T35","pred":"source","obj":"GENIAcorpus"},{"subj":"T36","pred":"source","obj":"GENIAcorpus"},{"subj":"T37","pred":"source","obj":"GENIAcorpus"},{"subj":"T38","pred":"source","obj":"GENIAcorpus"},{"subj":"T39","pred":"source","obj":"GENIAcorpus"},{"subj":"T40","pred":"source","obj":"GENIAcorpus"},{"subj":"T41","pred":"source","obj":"GENIAcorpus"},{"subj":"T42","pred":"source","obj":"GENIAcorpus"},{"subj":"T43","pred":"source","obj":"GENIAcorpus"},{"subj":"T44","pred":"source","obj":"GENIAcorpus"},{"subj":"T45","pred":"source","obj":"GENIAcorpus"},{"subj":"T46","pred":"source","obj":"GENIAcorpus"},{"subj":"T47","pred":"source","obj":"GENIAcorpus"}]},{"project":"Inflammaging","denotations":[{"id":"T1","span":{"begin":0,"end":61},"obj":"Sentence"},{"id":"T2","span":{"begin":62,"end":203},"obj":"Sentence"},{"id":"T3","span":{"begin":204,"end":382},"obj":"Sentence"},{"id":"T4","span":{"begin":383,"end":565},"obj":"Sentence"},{"id":"T5","span":{"begin":566,"end":682},"obj":"Sentence"},{"id":"T6","span":{"begin":683,"end":850},"obj":"Sentence"},{"id":"T7","span":{"begin":851,"end":1035},"obj":"Sentence"},{"id":"T8","span":{"begin":1036,"end":1134},"obj":"Sentence"},{"id":"T9","span":{"begin":1135,"end":1234},"obj":"Sentence"},{"id":"T10","span":{"begin":1235,"end":1327},"obj":"Sentence"},{"id":"T11","span":{"begin":1328,"end":1430},"obj":"Sentence"},{"id":"T12","span":{"begin":1431,"end":1599},"obj":"Sentence"},{"id":"T13","span":{"begin":1600,"end":1738},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":61},"obj":"Sentence"},{"id":"T2","span":{"begin":62,"end":203},"obj":"Sentence"},{"id":"T3","span":{"begin":204,"end":382},"obj":"Sentence"},{"id":"T4","span":{"begin":383,"end":565},"obj":"Sentence"},{"id":"T5","span":{"begin":566,"end":682},"obj":"Sentence"},{"id":"T6","span":{"begin":683,"end":850},"obj":"Sentence"},{"id":"T7","span":{"begin":851,"end":1035},"obj":"Sentence"},{"id":"T8","span":{"begin":1036,"end":1134},"obj":"Sentence"},{"id":"T9","span":{"begin":1135,"end":1234},"obj":"Sentence"},{"id":"T10","span":{"begin":1235,"end":1327},"obj":"Sentence"},{"id":"T11","span":{"begin":1328,"end":1430},"obj":"Sentence"},{"id":"T12","span":{"begin":1431,"end":1599},"obj":"Sentence"},{"id":"T13","span":{"begin":1600,"end":1738},"obj":"Sentence"}],"attributes":[{"subj":"T1","pred":"source","obj":"Inflammaging"},{"subj":"T2","pred":"source","obj":"Inflammaging"},{"subj":"T3","pred":"source","obj":"Inflammaging"},{"subj":"T4","pred":"source","obj":"Inflammaging"},{"subj":"T5","pred":"source","obj":"Inflammaging"},{"subj":"T6","pred":"source","obj":"Inflammaging"},{"subj":"T7","pred":"source","obj":"Inflammaging"},{"subj":"T8","pred":"source","obj":"Inflammaging"},{"subj":"T9","pred":"source","obj":"Inflammaging"},{"subj":"T10","pred":"source","obj":"Inflammaging"},{"subj":"T11","pred":"source","obj":"Inflammaging"},{"subj":"T12","pred":"source","obj":"Inflammaging"},{"subj":"T13","pred":"source","obj":"Inflammaging"},{"subj":"T1","pred":"source","obj":"Inflammaging"},{"subj":"T2","pred":"source","obj":"Inflammaging"},{"subj":"T3","pred":"source","obj":"Inflammaging"},{"subj":"T4","pred":"source","obj":"Inflammaging"},{"subj":"T5","pred":"source","obj":"Inflammaging"},{"subj":"T6","pred":"source","obj":"Inflammaging"},{"subj":"T7","pred":"source","obj":"Inflammaging"},{"subj":"T8","pred":"source","obj":"Inflammaging"},{"subj":"T9","pred":"source","obj":"Inflammaging"},{"subj":"T10","pred":"source","obj":"Inflammaging"},{"subj":"T11","pred":"source","obj":"Inflammaging"},{"subj":"T12","pred":"source","obj":"Inflammaging"},{"subj":"T13","pred":"source","obj":"Inflammaging"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"genia-medco-coref","color":"#93bdec","default":true},{"id":"PubmedHPO","color":"#d7ec93"},{"id":"jnlpba-st-training","color":"#e793ec"},{"id":"pubmed-sentences-benchmark","color":"#93eccd"},{"id":"GENIAcorpus","color":"#ecb393"},{"id":"Inflammaging","color":"#9993ec"}]}]}}