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PubMed:10362836 JSONTXT

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Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 104-121 http://purl.obolibrary.org/obo/MAT_0000301 denotes connective tissue
T2 264-281 http://purl.obolibrary.org/obo/MAT_0000301 denotes connective tissue

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-136 Sentence denotes NMR and molecular modeling studies on two glycopeptides from the carbohydrate-protein linkage region of connective tissue proteoglycans.
TextSentencer_T2 137-296 Sentence denotes Complete 1H and 13C NMR assignments are reported for two glycopeptides representing the carbohydrate-protein linkage region of connective tissue proteoglycans.
TextSentencer_T3 297-602 Sentence denotes These glycopeptides are the octasaccharide hexapeptide, Ser(GlcpAbeta(1-->3) Galpbeta(1-->3)Galpbeta(1-->4)Xylpbeta)-Gly-Ser-Gly-Se r (GlcpAbeta(1-->3)Galpbeta(1-->3)Galpbeta(1-->4)Xylp beta)-Gly (1), and the tetrasaccharide dipeptide, Ser(GlcpAbeta(1-->3)Galpbeta(1-->3)Galpbeta(1-->4)X ylpbeta)-Gly (2).
TextSentencer_T4 603-707 Sentence denotes The vicinal coupling constant data show that the monosaccharide residues adopt4 C 1 chair conformations.
TextSentencer_T5 708-929 Sentence denotes Distance geometry/simulated annealing calculations using 2D NOESY derived distance constraints yielded a single family of structures for the tetrasaccharide moiety, with well defined interglycosidic linkage conformations.
TextSentencer_T6 930-1199 Sentence denotes The straight phi torsion angles of the glycosidic C1'-O1 bonds showed a strict preference for the -sc range whereas the psi torsion angles (O1-Cn) exhibited dependence upon the interglycosidic linkage position (-ac for beta(1-->3) linkage, +ac for beta(1-->4) linkage).
TextSentencer_T7 1200-1293 Sentence denotes The predominant conformation about the glycopeptide bond is straight phi = -sc and psi = +ac.
TextSentencer_T8 1294-1592 Sentence denotes The presence of strong daN (i, i+1) NOE contacts, and the general absence of dNN (i, i+1) contacts (except for a weak Ser-5/Gly-6 dNN contact) and the dbN (i, i+1) contacts (except for Ser-1/Gly-2) in the ROESY spectrum, suggest that the backbone for 1 is predominantly in an extended conformation.
TextSentencer_T9 1593-1817 Sentence denotes A comparison of the ROESY data for 1 with those obtained from the unglycosylated hexapeptide (3) of the same sequence suggests that glycosylation has only a marginal influence on the backbone conformation of the hexapeptide.
T1 0-136 Sentence denotes NMR and molecular modeling studies on two glycopeptides from the carbohydrate-protein linkage region of connective tissue proteoglycans.
T2 137-296 Sentence denotes Complete 1H and 13C NMR assignments are reported for two glycopeptides representing the carbohydrate-protein linkage region of connective tissue proteoglycans.
T3 297-602 Sentence denotes These glycopeptides are the octasaccharide hexapeptide, Ser(GlcpAbeta(1-->3) Galpbeta(1-->3)Galpbeta(1-->4)Xylpbeta)-Gly-Ser-Gly-Se r (GlcpAbeta(1-->3)Galpbeta(1-->3)Galpbeta(1-->4)Xylp beta)-Gly (1), and the tetrasaccharide dipeptide, Ser(GlcpAbeta(1-->3)Galpbeta(1-->3)Galpbeta(1-->4)X ylpbeta)-Gly (2).
T4 603-707 Sentence denotes The vicinal coupling constant data show that the monosaccharide residues adopt4 C 1 chair conformations.
T5 708-929 Sentence denotes Distance geometry/simulated annealing calculations using 2D NOESY derived distance constraints yielded a single family of structures for the tetrasaccharide moiety, with well defined interglycosidic linkage conformations.
T6 930-1199 Sentence denotes The straight phi torsion angles of the glycosidic C1'-O1 bonds showed a strict preference for the -sc range whereas the psi torsion angles (O1-Cn) exhibited dependence upon the interglycosidic linkage position (-ac for beta(1-->3) linkage, +ac for beta(1-->4) linkage).
T7 1200-1293 Sentence denotes The predominant conformation about the glycopeptide bond is straight phi = -sc and psi = +ac.
T8 1294-1592 Sentence denotes The presence of strong daN (i, i+1) NOE contacts, and the general absence of dNN (i, i+1) contacts (except for a weak Ser-5/Gly-6 dNN contact) and the dbN (i, i+1) contacts (except for Ser-1/Gly-2) in the ROESY spectrum, suggest that the backbone for 1 is predominantly in an extended conformation.
T9 1593-1817 Sentence denotes A comparison of the ROESY data for 1 with those obtained from the unglycosylated hexapeptide (3) of the same sequence suggests that glycosylation has only a marginal influence on the backbone conformation of the hexapeptide.
T1 0-136 Sentence denotes NMR and molecular modeling studies on two glycopeptides from the carbohydrate-protein linkage region of connective tissue proteoglycans.
T2 137-296 Sentence denotes Complete 1H and 13C NMR assignments are reported for two glycopeptides representing the carbohydrate-protein linkage region of connective tissue proteoglycans.
T3 297-602 Sentence denotes These glycopeptides are the octasaccharide hexapeptide, Ser(GlcpAbeta(1-->3) Galpbeta(1-->3)Galpbeta(1-->4)Xylpbeta)-Gly-Ser-Gly-Se r (GlcpAbeta(1-->3)Galpbeta(1-->3)Galpbeta(1-->4)Xylp beta)-Gly (1), and the tetrasaccharide dipeptide, Ser(GlcpAbeta(1-->3)Galpbeta(1-->3)Galpbeta(1-->4)X ylpbeta)-Gly (2).
T4 603-707 Sentence denotes The vicinal coupling constant data show that the monosaccharide residues adopt4 C 1 chair conformations.
T5 708-929 Sentence denotes Distance geometry/simulated annealing calculations using 2D NOESY derived distance constraints yielded a single family of structures for the tetrasaccharide moiety, with well defined interglycosidic linkage conformations.
T6 930-1199 Sentence denotes The straight phi torsion angles of the glycosidic C1'-O1 bonds showed a strict preference for the -sc range whereas the psi torsion angles (O1-Cn) exhibited dependence upon the interglycosidic linkage position (-ac for beta(1-->3) linkage, +ac for beta(1-->4) linkage).
T7 1200-1293 Sentence denotes The predominant conformation about the glycopeptide bond is straight phi = -sc and psi = +ac.
T8 1294-1592 Sentence denotes The presence of strong daN (i, i+1) NOE contacts, and the general absence of dNN (i, i+1) contacts (except for a weak Ser-5/Gly-6 dNN contact) and the dbN (i, i+1) contacts (except for Ser-1/Gly-2) in the ROESY spectrum, suggest that the backbone for 1 is predominantly in an extended conformation.
T9 1593-1817 Sentence denotes A comparison of the ROESY data for 1 with those obtained from the unglycosylated hexapeptide (3) of the same sequence suggests that glycosylation has only a marginal influence on the backbone conformation of the hexapeptide.

GlycoBiology-cGGDB

Id Subject Object Predicate Lexical cue
_T1 1418-1423 http://jcggdb.jp/cggdb/entry.action?jcg_id=JCEG216 denotes Gly-6
_T2 1485-1490 http://jcggdb.jp/cggdb/entry.action?jcg_id=JCEG085 denotes Gly-2

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 42-55 FMAID:196778 denotes glycopeptides
_T2 42-55 FMAID:82784 denotes glycopeptides
_T3 65-77 FMAID:82737 denotes carbohydrate
_T4 65-77 FMAID:197276 denotes carbohydrate
_T5 78-85 FMAID:67257 denotes protein
_T6 78-85 FMAID:165447 denotes protein
_T7 94-121 FMAID:97547 denotes region of connective tissue
_T8 94-121 FMAID:9640 denotes region of connective tissue
_T9 101-121 FMAID:162348 denotes of connective tissue
_T10 104-121 FMAID:256072 denotes connective tissue
_T11 115-121 FMAID:256050 denotes tissue
_T12 122-135 FMAID:167397 denotes proteoglycans
_T13 122-135 FMAID:63015 denotes proteoglycans
_T14 194-207 FMAID:82784 denotes glycopeptides
_T15 194-207 FMAID:196778 denotes glycopeptides
_T16 225-237 FMAID:82737 denotes carbohydrate
_T17 225-237 FMAID:197276 denotes carbohydrate
_T18 238-245 FMAID:165447 denotes protein
_T19 238-245 FMAID:67257 denotes protein
_T20 254-281 FMAID:9640 denotes region of connective tissue
_T21 254-281 FMAID:97547 denotes region of connective tissue
_T22 261-281 FMAID:162348 denotes of connective tissue
_T23 264-281 FMAID:256072 denotes connective tissue
_T24 275-281 FMAID:256050 denotes tissue
_T25 282-295 FMAID:63015 denotes proteoglycans
_T26 282-295 FMAID:167397 denotes proteoglycans
_T27 303-316 FMAID:196778 denotes glycopeptides
_T28 303-316 FMAID:82784 denotes glycopeptides
_T29 652-666 FMAID:196730 denotes monosaccharide
_T30 652-666 FMAID:82741 denotes monosaccharide
_T31 980-982 FMAID:167718 denotes C1
_T32 980-982 FMAID:63493 denotes C1
_T33 1239-1251 FMAID:196778 denotes glycopeptide
_T34 1239-1251 FMAID:82784 denotes glycopeptide
_T35 1532-1540 FMAID:102867 denotes backbone
_T36 1776-1784 FMAID:102867 denotes backbone

uniprot-human

Id Subject Object Predicate Lexical cue
T1 1149-1155 http://www.uniprot.org/uniprot/Q92988 denotes beta(1
T2 1178-1184 http://www.uniprot.org/uniprot/Q92988 denotes beta(1

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 1029-1031 http://www.uniprot.org/uniprot/Q9JLI6 denotes sc
T2 1276-1278 http://www.uniprot.org/uniprot/Q9JLI6 denotes sc
T3 1142-1144 http://www.uniprot.org/uniprot/Q91V92 denotes ac
T4 1171-1173 http://www.uniprot.org/uniprot/Q91V92 denotes ac
T5 1290-1292 http://www.uniprot.org/uniprot/Q91V92 denotes ac

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 115-121 http://purl.bioontology.org/ontology/STY/T024 denotes tissue
T2 275-281 http://purl.bioontology.org/ontology/STY/T024 denotes tissue
T3 483-487 http://purl.bioontology.org/ontology/NCBITAXON/158455 denotes beta
T4 483-487 http://purl.bioontology.org/ontology/NCBITAXON/3554 denotes beta
T5 717-725 http://purl.bioontology.org/ontology/NCBITAXON/1369226 denotes geometry
T6 1149-1153 http://purl.bioontology.org/ontology/NCBITAXON/3554 denotes beta
T7 1149-1153 http://purl.bioontology.org/ontology/NCBITAXON/158455 denotes beta
T8 1178-1182 http://purl.bioontology.org/ontology/NCBITAXON/158455 denotes beta
T9 1178-1182 http://purl.bioontology.org/ontology/NCBITAXON/3554 denotes beta

GO-BP

Id Subject Object Predicate Lexical cue
T1 1142-1144 http://purl.obolibrary.org/obo/GO_0003987 denotes ac
T2 1142-1144 http://purl.obolibrary.org/obo/GO_0043884 denotes ac
T3 1171-1173 http://purl.obolibrary.org/obo/GO_0003987 denotes ac
T4 1171-1173 http://purl.obolibrary.org/obo/GO_0043884 denotes ac
T5 1290-1292 http://purl.obolibrary.org/obo/GO_0003987 denotes ac
T6 1290-1292 http://purl.obolibrary.org/obo/GO_0043884 denotes ac
T7 1725-1738 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

GO-CC

Id Subject Object Predicate Lexical cue
T1 353-356 http://purl.obolibrary.org/obo/GO_0005790 denotes Ser
T2 418-421 http://purl.obolibrary.org/obo/GO_0005790 denotes Ser
T3 533-536 http://purl.obolibrary.org/obo/GO_0005790 denotes Ser
T4 1412-1415 http://purl.obolibrary.org/obo/GO_0005790 denotes Ser
T5 1479-1482 http://purl.obolibrary.org/obo/GO_0005790 denotes Ser

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 104-121 http://purl.obolibrary.org/obo/UBERON_0002384 denotes connective tissue
T2 264-281 http://purl.obolibrary.org/obo/UBERON_0002384 denotes connective tissue
T3 115-121 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
T4 275-281 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue

GlycoBiology-MAT

Id Subject Object Predicate Lexical cue
T1 104-121 http://purl.obolibrary.org/obo/MAT_0000301 denotes connective tissue
T2 264-281 http://purl.obolibrary.org/obo/MAT_0000301 denotes connective tissue

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 115-121 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
PD-UBERON-AE-B_T2 275-281 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
PD-UBERON-AE-B_T3 104-121 http://purl.obolibrary.org/obo/UBERON_0002384 denotes connective tissue
PD-UBERON-AE-B_T4 264-281 http://purl.obolibrary.org/obo/UBERON_0002384 denotes connective tissue

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 104-121 Body_part denotes connective tissue http://purl.obolibrary.org/obo/MAT_0000301
T2 264-281 Body_part denotes connective tissue http://purl.obolibrary.org/obo/MAT_0000301

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 104-121 Body_part denotes connective tissue http://purl.obolibrary.org/obo/UBERON_0002384
T2 264-281 Body_part denotes connective tissue http://purl.obolibrary.org/obo/UBERON_0002384
T3 1532-1540 Body_part denotes backbone http://purl.obolibrary.org/obo/UBERON_0001130
T4 1776-1784 Body_part denotes backbone http://purl.obolibrary.org/obo/UBERON_0001130