PubMed:10362836
Annnotations
Glycosmos6-MAT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 104-121 | http://purl.obolibrary.org/obo/MAT_0000301 | denotes | connective tissue |
T2 | 264-281 | http://purl.obolibrary.org/obo/MAT_0000301 | denotes | connective tissue |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
TextSentencer_T1 | 0-136 | Sentence | denotes | NMR and molecular modeling studies on two glycopeptides from the carbohydrate-protein linkage region of connective tissue proteoglycans. |
TextSentencer_T2 | 137-296 | Sentence | denotes | Complete 1H and 13C NMR assignments are reported for two glycopeptides representing the carbohydrate-protein linkage region of connective tissue proteoglycans. |
TextSentencer_T3 | 297-602 | Sentence | denotes | These glycopeptides are the octasaccharide hexapeptide, Ser(GlcpAbeta(1-->3) Galpbeta(1-->3)Galpbeta(1-->4)Xylpbeta)-Gly-Ser-Gly-Se r (GlcpAbeta(1-->3)Galpbeta(1-->3)Galpbeta(1-->4)Xylp beta)-Gly (1), and the tetrasaccharide dipeptide, Ser(GlcpAbeta(1-->3)Galpbeta(1-->3)Galpbeta(1-->4)X ylpbeta)-Gly (2). |
TextSentencer_T4 | 603-707 | Sentence | denotes | The vicinal coupling constant data show that the monosaccharide residues adopt4 C 1 chair conformations. |
TextSentencer_T5 | 708-929 | Sentence | denotes | Distance geometry/simulated annealing calculations using 2D NOESY derived distance constraints yielded a single family of structures for the tetrasaccharide moiety, with well defined interglycosidic linkage conformations. |
TextSentencer_T6 | 930-1199 | Sentence | denotes | The straight phi torsion angles of the glycosidic C1'-O1 bonds showed a strict preference for the -sc range whereas the psi torsion angles (O1-Cn) exhibited dependence upon the interglycosidic linkage position (-ac for beta(1-->3) linkage, +ac for beta(1-->4) linkage). |
TextSentencer_T7 | 1200-1293 | Sentence | denotes | The predominant conformation about the glycopeptide bond is straight phi = -sc and psi = +ac. |
TextSentencer_T8 | 1294-1592 | Sentence | denotes | The presence of strong daN (i, i+1) NOE contacts, and the general absence of dNN (i, i+1) contacts (except for a weak Ser-5/Gly-6 dNN contact) and the dbN (i, i+1) contacts (except for Ser-1/Gly-2) in the ROESY spectrum, suggest that the backbone for 1 is predominantly in an extended conformation. |
TextSentencer_T9 | 1593-1817 | Sentence | denotes | A comparison of the ROESY data for 1 with those obtained from the unglycosylated hexapeptide (3) of the same sequence suggests that glycosylation has only a marginal influence on the backbone conformation of the hexapeptide. |
T1 | 0-136 | Sentence | denotes | NMR and molecular modeling studies on two glycopeptides from the carbohydrate-protein linkage region of connective tissue proteoglycans. |
T2 | 137-296 | Sentence | denotes | Complete 1H and 13C NMR assignments are reported for two glycopeptides representing the carbohydrate-protein linkage region of connective tissue proteoglycans. |
T3 | 297-602 | Sentence | denotes | These glycopeptides are the octasaccharide hexapeptide, Ser(GlcpAbeta(1-->3) Galpbeta(1-->3)Galpbeta(1-->4)Xylpbeta)-Gly-Ser-Gly-Se r (GlcpAbeta(1-->3)Galpbeta(1-->3)Galpbeta(1-->4)Xylp beta)-Gly (1), and the tetrasaccharide dipeptide, Ser(GlcpAbeta(1-->3)Galpbeta(1-->3)Galpbeta(1-->4)X ylpbeta)-Gly (2). |
T4 | 603-707 | Sentence | denotes | The vicinal coupling constant data show that the monosaccharide residues adopt4 C 1 chair conformations. |
T5 | 708-929 | Sentence | denotes | Distance geometry/simulated annealing calculations using 2D NOESY derived distance constraints yielded a single family of structures for the tetrasaccharide moiety, with well defined interglycosidic linkage conformations. |
T6 | 930-1199 | Sentence | denotes | The straight phi torsion angles of the glycosidic C1'-O1 bonds showed a strict preference for the -sc range whereas the psi torsion angles (O1-Cn) exhibited dependence upon the interglycosidic linkage position (-ac for beta(1-->3) linkage, +ac for beta(1-->4) linkage). |
T7 | 1200-1293 | Sentence | denotes | The predominant conformation about the glycopeptide bond is straight phi = -sc and psi = +ac. |
T8 | 1294-1592 | Sentence | denotes | The presence of strong daN (i, i+1) NOE contacts, and the general absence of dNN (i, i+1) contacts (except for a weak Ser-5/Gly-6 dNN contact) and the dbN (i, i+1) contacts (except for Ser-1/Gly-2) in the ROESY spectrum, suggest that the backbone for 1 is predominantly in an extended conformation. |
T9 | 1593-1817 | Sentence | denotes | A comparison of the ROESY data for 1 with those obtained from the unglycosylated hexapeptide (3) of the same sequence suggests that glycosylation has only a marginal influence on the backbone conformation of the hexapeptide. |
T1 | 0-136 | Sentence | denotes | NMR and molecular modeling studies on two glycopeptides from the carbohydrate-protein linkage region of connective tissue proteoglycans. |
T2 | 137-296 | Sentence | denotes | Complete 1H and 13C NMR assignments are reported for two glycopeptides representing the carbohydrate-protein linkage region of connective tissue proteoglycans. |
T3 | 297-602 | Sentence | denotes | These glycopeptides are the octasaccharide hexapeptide, Ser(GlcpAbeta(1-->3) Galpbeta(1-->3)Galpbeta(1-->4)Xylpbeta)-Gly-Ser-Gly-Se r (GlcpAbeta(1-->3)Galpbeta(1-->3)Galpbeta(1-->4)Xylp beta)-Gly (1), and the tetrasaccharide dipeptide, Ser(GlcpAbeta(1-->3)Galpbeta(1-->3)Galpbeta(1-->4)X ylpbeta)-Gly (2). |
T4 | 603-707 | Sentence | denotes | The vicinal coupling constant data show that the monosaccharide residues adopt4 C 1 chair conformations. |
T5 | 708-929 | Sentence | denotes | Distance geometry/simulated annealing calculations using 2D NOESY derived distance constraints yielded a single family of structures for the tetrasaccharide moiety, with well defined interglycosidic linkage conformations. |
T6 | 930-1199 | Sentence | denotes | The straight phi torsion angles of the glycosidic C1'-O1 bonds showed a strict preference for the -sc range whereas the psi torsion angles (O1-Cn) exhibited dependence upon the interglycosidic linkage position (-ac for beta(1-->3) linkage, +ac for beta(1-->4) linkage). |
T7 | 1200-1293 | Sentence | denotes | The predominant conformation about the glycopeptide bond is straight phi = -sc and psi = +ac. |
T8 | 1294-1592 | Sentence | denotes | The presence of strong daN (i, i+1) NOE contacts, and the general absence of dNN (i, i+1) contacts (except for a weak Ser-5/Gly-6 dNN contact) and the dbN (i, i+1) contacts (except for Ser-1/Gly-2) in the ROESY spectrum, suggest that the backbone for 1 is predominantly in an extended conformation. |
T9 | 1593-1817 | Sentence | denotes | A comparison of the ROESY data for 1 with those obtained from the unglycosylated hexapeptide (3) of the same sequence suggests that glycosylation has only a marginal influence on the backbone conformation of the hexapeptide. |
GlycoBiology-cGGDB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
_T1 | 1418-1423 | http://jcggdb.jp/cggdb/entry.action?jcg_id=JCEG216 | denotes | Gly-6 |
_T2 | 1485-1490 | http://jcggdb.jp/cggdb/entry.action?jcg_id=JCEG085 | denotes | Gly-2 |
GlycoBiology-FMA
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
_T1 | 42-55 | FMAID:196778 | denotes | glycopeptides |
_T2 | 42-55 | FMAID:82784 | denotes | glycopeptides |
_T3 | 65-77 | FMAID:82737 | denotes | carbohydrate |
_T4 | 65-77 | FMAID:197276 | denotes | carbohydrate |
_T5 | 78-85 | FMAID:67257 | denotes | protein |
_T6 | 78-85 | FMAID:165447 | denotes | protein |
_T7 | 94-121 | FMAID:97547 | denotes | region of connective tissue |
_T8 | 94-121 | FMAID:9640 | denotes | region of connective tissue |
_T9 | 101-121 | FMAID:162348 | denotes | of connective tissue |
_T10 | 104-121 | FMAID:256072 | denotes | connective tissue |
_T11 | 115-121 | FMAID:256050 | denotes | tissue |
_T12 | 122-135 | FMAID:167397 | denotes | proteoglycans |
_T13 | 122-135 | FMAID:63015 | denotes | proteoglycans |
_T14 | 194-207 | FMAID:82784 | denotes | glycopeptides |
_T15 | 194-207 | FMAID:196778 | denotes | glycopeptides |
_T16 | 225-237 | FMAID:82737 | denotes | carbohydrate |
_T17 | 225-237 | FMAID:197276 | denotes | carbohydrate |
_T18 | 238-245 | FMAID:165447 | denotes | protein |
_T19 | 238-245 | FMAID:67257 | denotes | protein |
_T20 | 254-281 | FMAID:9640 | denotes | region of connective tissue |
_T21 | 254-281 | FMAID:97547 | denotes | region of connective tissue |
_T22 | 261-281 | FMAID:162348 | denotes | of connective tissue |
_T23 | 264-281 | FMAID:256072 | denotes | connective tissue |
_T24 | 275-281 | FMAID:256050 | denotes | tissue |
_T25 | 282-295 | FMAID:63015 | denotes | proteoglycans |
_T26 | 282-295 | FMAID:167397 | denotes | proteoglycans |
_T27 | 303-316 | FMAID:196778 | denotes | glycopeptides |
_T28 | 303-316 | FMAID:82784 | denotes | glycopeptides |
_T29 | 652-666 | FMAID:196730 | denotes | monosaccharide |
_T30 | 652-666 | FMAID:82741 | denotes | monosaccharide |
_T31 | 980-982 | FMAID:167718 | denotes | C1 |
_T32 | 980-982 | FMAID:63493 | denotes | C1 |
_T33 | 1239-1251 | FMAID:196778 | denotes | glycopeptide |
_T34 | 1239-1251 | FMAID:82784 | denotes | glycopeptide |
_T35 | 1532-1540 | FMAID:102867 | denotes | backbone |
_T36 | 1776-1784 | FMAID:102867 | denotes | backbone |
uniprot-human
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 1149-1155 | http://www.uniprot.org/uniprot/Q92988 | denotes | beta(1 |
T2 | 1178-1184 | http://www.uniprot.org/uniprot/Q92988 | denotes | beta(1 |
uniprot-mouse
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 1029-1031 | http://www.uniprot.org/uniprot/Q9JLI6 | denotes | sc |
T2 | 1276-1278 | http://www.uniprot.org/uniprot/Q9JLI6 | denotes | sc |
T3 | 1142-1144 | http://www.uniprot.org/uniprot/Q91V92 | denotes | ac |
T4 | 1171-1173 | http://www.uniprot.org/uniprot/Q91V92 | denotes | ac |
T5 | 1290-1292 | http://www.uniprot.org/uniprot/Q91V92 | denotes | ac |
GlycoBiology-NCBITAXON
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 115-121 | http://purl.bioontology.org/ontology/STY/T024 | denotes | tissue |
T2 | 275-281 | http://purl.bioontology.org/ontology/STY/T024 | denotes | tissue |
T3 | 483-487 | http://purl.bioontology.org/ontology/NCBITAXON/158455 | denotes | beta |
T4 | 483-487 | http://purl.bioontology.org/ontology/NCBITAXON/3554 | denotes | beta |
T5 | 717-725 | http://purl.bioontology.org/ontology/NCBITAXON/1369226 | denotes | geometry |
T6 | 1149-1153 | http://purl.bioontology.org/ontology/NCBITAXON/3554 | denotes | beta |
T7 | 1149-1153 | http://purl.bioontology.org/ontology/NCBITAXON/158455 | denotes | beta |
T8 | 1178-1182 | http://purl.bioontology.org/ontology/NCBITAXON/158455 | denotes | beta |
T9 | 1178-1182 | http://purl.bioontology.org/ontology/NCBITAXON/3554 | denotes | beta |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 1142-1144 | http://purl.obolibrary.org/obo/GO_0003987 | denotes | ac |
T2 | 1142-1144 | http://purl.obolibrary.org/obo/GO_0043884 | denotes | ac |
T3 | 1171-1173 | http://purl.obolibrary.org/obo/GO_0003987 | denotes | ac |
T4 | 1171-1173 | http://purl.obolibrary.org/obo/GO_0043884 | denotes | ac |
T5 | 1290-1292 | http://purl.obolibrary.org/obo/GO_0003987 | denotes | ac |
T6 | 1290-1292 | http://purl.obolibrary.org/obo/GO_0043884 | denotes | ac |
T7 | 1725-1738 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 353-356 | http://purl.obolibrary.org/obo/GO_0005790 | denotes | Ser |
T2 | 418-421 | http://purl.obolibrary.org/obo/GO_0005790 | denotes | Ser |
T3 | 533-536 | http://purl.obolibrary.org/obo/GO_0005790 | denotes | Ser |
T4 | 1412-1415 | http://purl.obolibrary.org/obo/GO_0005790 | denotes | Ser |
T5 | 1479-1482 | http://purl.obolibrary.org/obo/GO_0005790 | denotes | Ser |
UBERON-AE
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 104-121 | http://purl.obolibrary.org/obo/UBERON_0002384 | denotes | connective tissue |
T2 | 264-281 | http://purl.obolibrary.org/obo/UBERON_0002384 | denotes | connective tissue |
T3 | 115-121 | http://purl.obolibrary.org/obo/UBERON_0000479 | denotes | tissue |
T4 | 275-281 | http://purl.obolibrary.org/obo/UBERON_0000479 | denotes | tissue |
GlycoBiology-MAT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 104-121 | http://purl.obolibrary.org/obo/MAT_0000301 | denotes | connective tissue |
T2 | 264-281 | http://purl.obolibrary.org/obo/MAT_0000301 | denotes | connective tissue |
performance-test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
PD-UBERON-AE-B_T1 | 115-121 | http://purl.obolibrary.org/obo/UBERON_0000479 | denotes | tissue |
PD-UBERON-AE-B_T2 | 275-281 | http://purl.obolibrary.org/obo/UBERON_0000479 | denotes | tissue |
PD-UBERON-AE-B_T3 | 104-121 | http://purl.obolibrary.org/obo/UBERON_0002384 | denotes | connective tissue |
PD-UBERON-AE-B_T4 | 264-281 | http://purl.obolibrary.org/obo/UBERON_0002384 | denotes | connective tissue |
Anatomy-MAT
Id | Subject | Object | Predicate | Lexical cue | mat_id |
---|---|---|---|---|---|
T1 | 104-121 | Body_part | denotes | connective tissue | http://purl.obolibrary.org/obo/MAT_0000301 |
T2 | 264-281 | Body_part | denotes | connective tissue | http://purl.obolibrary.org/obo/MAT_0000301 |
Anatomy-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T1 | 104-121 | Body_part | denotes | connective tissue | http://purl.obolibrary.org/obo/UBERON_0002384 |
T2 | 264-281 | Body_part | denotes | connective tissue | http://purl.obolibrary.org/obo/UBERON_0002384 |
T3 | 1532-1540 | Body_part | denotes | backbone | http://purl.obolibrary.org/obo/UBERON_0001130 |
T4 | 1776-1784 | Body_part | denotes | backbone | http://purl.obolibrary.org/obo/UBERON_0001130 |