PubMed:10202034 JSONTXT

Annnotations TAB JSON ListView MergeView

    jnlpba-st-training

    {"project":"jnlpba-st-training","denotations":[{"id":"T1","span":{"begin":0,"end":34},"obj":"protein"},{"id":"T2","span":{"begin":36,"end":57},"obj":"protein"},{"id":"T3","span":{"begin":63,"end":68},"obj":"protein"},{"id":"T4","span":{"begin":85,"end":95},"obj":"protein"},{"id":"T5","span":{"begin":106,"end":110},"obj":"protein"},{"id":"T6","span":{"begin":211,"end":250},"obj":"protein"},{"id":"T7","span":{"begin":259,"end":293},"obj":"protein"},{"id":"T8","span":{"begin":295,"end":301},"obj":"protein"},{"id":"T9","span":{"begin":309,"end":330},"obj":"protein"},{"id":"T10","span":{"begin":332,"end":335},"obj":"protein"},{"id":"T11","span":{"begin":350,"end":354},"obj":"protein"},{"id":"T12","span":{"begin":374,"end":389},"obj":"cell_type"},{"id":"T13","span":{"begin":429,"end":439},"obj":"protein"},{"id":"T14","span":{"begin":561,"end":573},"obj":"protein"},{"id":"T15","span":{"begin":625,"end":635},"obj":"protein"},{"id":"T16","span":{"begin":690,"end":713},"obj":"protein"},{"id":"T17","span":{"begin":768,"end":772},"obj":"protein"},{"id":"T18","span":{"begin":788,"end":797},"obj":"cell_type"},{"id":"T19","span":{"begin":854,"end":859},"obj":"protein"},{"id":"T20","span":{"begin":863,"end":867},"obj":"protein"},{"id":"T21","span":{"begin":929,"end":933},"obj":"protein"},{"id":"T22","span":{"begin":1006,"end":1012},"obj":"protein"},{"id":"T23","span":{"begin":1055,"end":1065},"obj":"protein"},{"id":"T24","span":{"begin":1129,"end":1139},"obj":"protein"},{"id":"T25","span":{"begin":1174,"end":1184},"obj":"protein"},{"id":"T26","span":{"begin":1241,"end":1254},"obj":"DNA"},{"id":"T27","span":{"begin":1344,"end":1357},"obj":"protein"},{"id":"T28","span":{"begin":1397,"end":1401},"obj":"protein"},{"id":"T29","span":{"begin":1458,"end":1464},"obj":"protein"},{"id":"T30","span":{"begin":1469,"end":1472},"obj":"protein"},{"id":"T31","span":{"begin":1505,"end":1515},"obj":"protein"},{"id":"T32","span":{"begin":1571,"end":1574},"obj":"protein"},{"id":"T33","span":{"begin":1596,"end":1606},"obj":"protein"},{"id":"T34","span":{"begin":1681,"end":1686},"obj":"protein"}],"text":"Extracellular-regulated kinase 1/2, Jun N-terminal kinase, and c-Jun are involved in NF-kappa B-dependent IL-6 expression in human monocytes.\nIn the present study we investigated the possible involvement of the mitogen-activated protein kinase family members extracellular-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) in mediating IL-6 gene expression in human monocytes, in particular their role in enhancing NF-kappa B activity. Freshly isolated monocytes treated with the protein phosphatase inhibitor okadaic acid secreted high levels of IL-6 protein, which coincided with enhanced binding activity of NF-kappa B as well as with phosphorylation and activation of the ERK1/2 and JNK proteins. The ERK pathway-specific inhibitor PD98059 inhibited IL-6 secretion from monocytes. Transient overexpression of inactive mutants of either Raf-1 or JNK1 showed that both pathways were involved in kappa B-dependent IL-6 promoter activity. By using PD98059, we demonstrated that the Raf1/MEK1/ERK1/2 pathway did not affect the DNA binding of NF-kappa B but, rather, acted at the level of transcriptional activity of NF-kappa B. Interestingly, it was shown that NF-kappa B-mediated gene transcription, both in the context of the IL-6 promoter as well as on its own, was dependent on both serine kinase activity and interaction with c-Jun protein. We conclude that okadaic acid-induced IL-6 gene expression is at least partly mediated through the ERK1/2 and JNK pathway-dependent activation of NF-kappa B transcriptional capacity. Our results suggest that the JNK pathway may regulate NF-kappa B-mediated gene transcription through its phosphorylation and activation of c-Jun."}

    semrep-sample

    {"project":"semrep-sample","denotations":[{"id":"E1-ti-1","span":{"begin":0,"end":13},"obj":"cui:C0521119"},{"id":"E2-ti-1","span":{"begin":24,"end":30},"obj":"cui:C0031727"},{"id":"E3-ti-1","span":{"begin":42,"end":50},"obj":"cui:C0205088"},{"id":"E4-ti-1","span":{"begin":36,"end":57},"obj":"cui:C0872053"},{"id":"E5-ti-1","span":{"begin":63,"end":68},"obj":"cui:C0085942"},{"id":"E6-ti-1","span":{"begin":85,"end":95},"obj":"cui:C0079904"},{"id":"E7-ti-1","span":{"begin":106,"end":110},"obj":"cui:C0021760"},{"id":"E8-ti-1","span":{"begin":111,"end":121},"obj":"cui:C0185117"},{"id":"E9-ti-1","span":{"begin":125,"end":130},"obj":"cui:C0020114"},{"id":"E10-ti-1","span":{"begin":131,"end":140},"obj":"cui:C0026473"},{"id":"T1","span":{"begin":73,"end":81},"obj":"INTERACTS_WITH"},{"id":"T2","span":{"begin":73,"end":81},"obj":"INTERACTS_WITH"},{"id":"T3","span":{"begin":125,"end":140},"obj":"PART_OF"},{"id":"E1-ab-1","span":{"begin":149,"end":156},"obj":"cui:C0150312"},{"id":"E2-ab-1","span":{"begin":157,"end":162},"obj":"cui:C0008972"},{"id":"E3-ab-1","span":{"begin":183,"end":191},"obj":"cui:C0332149"},{"id":"E4-ab-1","span":{"begin":244,"end":258},"obj":"cui:C0086282"},{"id":"E5-ab-1","span":{"begin":259,"end":272},"obj":"cui:C0521119"},{"id":"E6-ab-1","span":{"begin":211,"end":293},"obj":"cui:C0216471"},{"id":"E7-ab-1","span":{"begin":307,"end":330},"obj":"cui:C0248813"},{"id":"E8-ab-1","span":{"begin":332,"end":335},"obj":"cui:C1367731"},{"id":"E9-ab-1","span":{"begin":350,"end":359},"obj":"cui:C1334122"},{"id":"E10-ab-1","span":{"begin":360,"end":370},"obj":"cui:C0185117"},{"id":"E11-ab-1","span":{"begin":374,"end":379},"obj":"cui:C0020114"},{"id":"E12-ab-1","span":{"begin":380,"end":389},"obj":"cui:C0026473"},{"id":"E13-ab-1","span":{"begin":411,"end":415},"obj":"cui:C0035820"},{"id":"E14-ab-1","span":{"begin":429,"end":439},"obj":"cui:C0079904"},{"id":"E15-ab-1","span":{"begin":440,"end":448},"obj":"cui:C0439167"},{"id":"T4","span":{"begin":340,"end":349},"obj":"INTERACTS_WITH"},{"id":"T5","span":{"begin":374,"end":389},"obj":"PART_OF"},{"id":"T6","span":{"begin":371,"end":373},"obj":"LOCATION_OF"},{"id":"E1-ab-2","span":{"begin":458,"end":466},"obj":"cui:C0205409"},{"id":"E2-ab-2","span":{"begin":467,"end":476},"obj":"cui:C0026473"},{"id":"E3-ab-2","span":{"begin":494,"end":523},"obj":"cui:C1514560"},{"id":"E4-ab-2","span":{"begin":524,"end":536},"obj":"cui:C0069389"},{"id":"E5-ab-2","span":{"begin":546,"end":550},"obj":"cui:C0205250"},{"id":"E6-ab-2","span":{"begin":551,"end":557},"obj":"cui:C0441889"},{"id":"E7-ab-2","span":{"begin":561,"end":565},"obj":"cui:C0021760"},{"id":"E8-ab-2","span":{"begin":566,"end":573},"obj":"cui:C0033684"},{"id":"E9-ab-2","span":{"begin":613,"end":621},"obj":"cui:C0439167"},{"id":"E10-ab-2","span":{"begin":625,"end":635},"obj":"cui:C0079904"},{"id":"E11-ab-2","span":{"begin":652,"end":667},"obj":"cui:C0031715"},{"id":"E12-ab-2","span":{"begin":690,"end":696},"obj":"cui:C0521119"},{"id":"E13-ab-2","span":{"begin":690,"end":696},"obj":"cui:C0031727"},{"id":"E14-ab-2","span":{"begin":701,"end":704},"obj":"cui:C1367731"},{"id":"E15-ab-2","span":{"begin":705,"end":713},"obj":"cui:C0033684"},{"id":"T7","span":{"begin":537,"end":545},"obj":"PRODUCES"},{"id":"E1-ab-3","span":{"begin":719,"end":722},"obj":"entrez:2048,5594"},{"id":"E2-ab-3","span":{"begin":723,"end":730},"obj":"cui:C0243123"},{"id":"E3-ab-3","span":{"begin":740,"end":749},"obj":"cui:C0243077"},{"id":"E4-ab-3","span":{"begin":750,"end":757},"obj":"cui:C0298346"},{"id":"E5-ab-3","span":{"begin":768,"end":772},"obj":"cui:C0021760"},{"id":"E6-ab-3","span":{"begin":773,"end":782},"obj":"cui:C0015283"},{"id":"E7-ab-3","span":{"begin":788,"end":797},"obj":"cui:C0026473"},{"id":"T8","span":{"begin":783,"end":787},"obj":"LOCATION_OF"},{"id":"E1-ab-4","span":{"begin":799,"end":808},"obj":"cui:C0205374"},{"id":"E2-ab-4","span":{"begin":827,"end":835},"obj":"cui:C0205254"},{"id":"E3-ab-4","span":{"begin":836,"end":843},"obj":"cui:C0596988"},{"id":"E4-ab-4","span":{"begin":854,"end":859},"obj":"cui:C0812215"},{"id":"E5-ab-4","span":{"begin":863,"end":867},"obj":"cui:C1367731"},{"id":"E6-ab-4","span":{"begin":911,"end":916},"obj":"cui:C0439099"},{"id":"E7-ab-4","span":{"begin":929,"end":933},"obj":"cui:C0021760"},{"id":"E8-ab-4","span":{"begin":943,"end":951},"obj":"cui:C0439167"},{"id":"T9","span":{"begin":899,"end":907},"obj":"INTERACTS_WITH"},{"id":"E1-ab-5","span":{"begin":962,"end":969},"obj":"cui:C0298346"},{"id":"E2-ab-5","span":{"begin":1001,"end":1005},"obj":"cui:C1334474"},{"id":"E3-ab-5","span":{"begin":1006,"end":1012},"obj":"cui:C0521119"},{"id":"E4-ab-5","span":{"begin":996,"end":1012},"obj":"cui:C0139905"},{"id":"E5-ab-5","span":{"begin":1013,"end":1020},"obj":"cui:C0243123"},{"id":"E6-ab-5","span":{"begin":1025,"end":1028},"obj":"cui:C1518422"},{"id":"E7-ab-5","span":{"begin":1040,"end":1051},"obj":"cui:C1148673"},{"id":"E8-ab-5","span":{"begin":1055,"end":1065},"obj":"cui:C0079904"},{"id":"E9-ab-5","span":{"begin":1101,"end":1116},"obj":"cui:C0040649"},{"id":"E10-ab-5","span":{"begin":1117,"end":1125},"obj":"cui:C0439167"},{"id":"E11-ab-5","span":{"begin":1129,"end":1139},"obj":"cui:C0079904"},{"id":"T10","span":{"begin":1029,"end":1035},"obj":"AFFECTS"},{"id":"E1-ab-6","span":{"begin":1174,"end":1184},"obj":"cui:C0079904"},{"id":"E2-ab-6","span":{"begin":1185,"end":1193},"obj":"cui:C0086597"},{"id":"E3-ab-6","span":{"begin":1194,"end":1212},"obj":"cui:C0040649"},{"id":"E4-ab-6","span":{"begin":1241,"end":1245},"obj":"cui:C0021760"},{"id":"E5-ab-6","span":{"begin":1273,"end":1276},"obj":"cui:C1546511"},{"id":"E6-ab-6","span":{"begin":1300,"end":1306},"obj":"cui:C0036720"},{"id":"E7-ab-6","span":{"begin":1307,"end":1322},"obj":"cui:C1150423"},{"id":"E8-ab-6","span":{"begin":1327,"end":1338},"obj":"cui:C0687133"},{"id":"E9-ab-6","span":{"begin":1344,"end":1357},"obj":"cui:C0085296"},{"id":"T11","span":{"begin":1282,"end":1291},"obj":"STIMULATES"},{"id":"E1-ab-7","span":{"begin":1376,"end":1388},"obj":"cui:C0069389"},{"id":"E2-ab-7","span":{"begin":1389,"end":1396},"obj":"cui:C0205263"},{"id":"E3-ab-7","span":{"begin":1397,"end":1406},"obj":"cui:C1334122"},{"id":"E4-ab-7","span":{"begin":1407,"end":1417},"obj":"cui:C0185117"},{"id":"E5-ab-7","span":{"begin":1458,"end":1464},"obj":"cui:C0521119"},{"id":"E6-ab-7","span":{"begin":1458,"end":1464},"obj":"cui:C0031727"},{"id":"E7-ab-7","span":{"begin":1469,"end":1472},"obj":"cui:C1367731"},{"id":"E8-ab-7","span":{"begin":1473,"end":1480},"obj":"cui:C0243123"},{"id":"E9-ab-7","span":{"begin":1505,"end":1515},"obj":"cui:C0079904"},{"id":"E10-ab-7","span":{"begin":1516,"end":1531},"obj":"cui:C0040649"},{"id":"E11-ab-7","span":{"begin":1532,"end":1540},"obj":"cui:C1516240"},{"id":"E1-ab-8","span":{"begin":1546,"end":1553},"obj":"cui:C1274040"},{"id":"E2-ab-8","span":{"begin":1571,"end":1574},"obj":"cui:C1367731"},{"id":"E3-ab-8","span":{"begin":1575,"end":1582},"obj":"cui:C0243123"},{"id":"E4-ab-8","span":{"begin":1596,"end":1606},"obj":"cui:C0079904"},{"id":"E5-ab-8","span":{"begin":1607,"end":1615},"obj":"cui:C0086597"},{"id":"E6-ab-8","span":{"begin":1616,"end":1634},"obj":"cui:C0040649"},{"id":"E7-ab-8","span":{"begin":1647,"end":1662},"obj":"cui:C0031715"},{"id":"E8-ab-8","span":{"begin":1681,"end":1686},"obj":"cui:C0085942"},{"id":"T12","span":{"begin":1587,"end":1595},"obj":"AFFECTS"}],"relations":[{"id":"R1","pred":"subjectOf","subj":"E5-ti-1","obj":"T1"},{"id":"R2","pred":"objectOf","subj":"E7-ti-1","obj":"T1"},{"id":"R3","pred":"subjectOf","subj":"E4-ti-1","obj":"T2"},{"id":"R4","pred":"objectOf","subj":"E7-ti-1","obj":"T2"},{"id":"R5","pred":"subjectOf","subj":"E10-ti-1","obj":"T3"},{"id":"R6","pred":"objectOf","subj":"E9-ti-1","obj":"T3"},{"id":"R7","pred":"subjectOf","subj":"E7-ab-1","obj":"T4"},{"id":"R8","pred":"objectOf","subj":"E9-ab-1","obj":"T4"},{"id":"R9","pred":"subjectOf","subj":"E12-ab-1","obj":"T5"},{"id":"R10","pred":"objectOf","subj":"E11-ab-1","obj":"T5"},{"id":"R11","pred":"subjectOf","subj":"E12-ab-1","obj":"T6"},{"id":"R12","pred":"objectOf","subj":"E9-ab-1","obj":"T6"},{"id":"R13","pred":"subjectOf","subj":"E2-ab-2","obj":"T7"},{"id":"R14","pred":"objectOf","subj":"E7-ab-2","obj":"T7"},{"id":"R15","pred":"subjectOf","subj":"E7-ab-3","obj":"T8"},{"id":"R16","pred":"objectOf","subj":"E5-ab-3","obj":"T8"},{"id":"R17","pred":"subjectOf","subj":"E5-ab-4","obj":"T9"},{"id":"R18","pred":"objectOf","subj":"E7-ab-4","obj":"T9"},{"id":"R19","pred":"subjectOf","subj":"E1-ab-5","obj":"T10"},{"id":"R20","pred":"objectOf","subj":"E7-ab-5","obj":"T10"},{"id":"R21","pred":"subjectOf","subj":"E4-ab-6","obj":"T11"},{"id":"R22","pred":"objectOf","subj":"E9-ab-6","obj":"T11"},{"id":"R23","pred":"subjectOf","subj":"E2-ab-8","obj":"T12"},{"id":"R24","pred":"objectOf","subj":"E6-ab-8","obj":"T12"}],"text":"Extracellular-regulated kinase 1/2, Jun N-terminal kinase, and c-Jun are involved in NF-kappa B-dependent IL-6 expression in human monocytes.\nIn the present study we investigated the possible involvement of the mitogen-activated protein kinase family members extracellular-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) in mediating IL-6 gene expression in human monocytes, in particular their role in enhancing NF-kappa B activity. Freshly isolated monocytes treated with the protein phosphatase inhibitor okadaic acid secreted high levels of IL-6 protein, which coincided with enhanced binding activity of NF-kappa B as well as with phosphorylation and activation of the ERK1/2 and JNK proteins. The ERK pathway-specific inhibitor PD98059 inhibited IL-6 secretion from monocytes. Transient overexpression of inactive mutants of either Raf-1 or JNK1 showed that both pathways were involved in kappa B-dependent IL-6 promoter activity. By using PD98059, we demonstrated that the Raf1/MEK1/ERK1/2 pathway did not affect the DNA binding of NF-kappa B but, rather, acted at the level of transcriptional activity of NF-kappa B. Interestingly, it was shown that NF-kappa B-mediated gene transcription, both in the context of the IL-6 promoter as well as on its own, was dependent on both serine kinase activity and interaction with c-Jun protein. We conclude that okadaic acid-induced IL-6 gene expression is at least partly mediated through the ERK1/2 and JNK pathway-dependent activation of NF-kappa B transcriptional capacity. Our results suggest that the JNK pathway may regulate NF-kappa B-mediated gene transcription through its phosphorylation and activation of c-Jun."}

    pubmed-sentences-benchmark

    {"project":"pubmed-sentences-benchmark","denotations":[{"id":"S1","span":{"begin":0,"end":141},"obj":"Sentence"},{"id":"S2","span":{"begin":142,"end":449},"obj":"Sentence"},{"id":"S3","span":{"begin":450,"end":714},"obj":"Sentence"},{"id":"S4","span":{"begin":715,"end":798},"obj":"Sentence"},{"id":"S5","span":{"begin":799,"end":952},"obj":"Sentence"},{"id":"S6","span":{"begin":953,"end":1140},"obj":"Sentence"},{"id":"S7","span":{"begin":1141,"end":1358},"obj":"Sentence"},{"id":"S8","span":{"begin":1359,"end":1541},"obj":"Sentence"},{"id":"S9","span":{"begin":1542,"end":1687},"obj":"Sentence"}],"text":"Extracellular-regulated kinase 1/2, Jun N-terminal kinase, and c-Jun are involved in NF-kappa B-dependent IL-6 expression in human monocytes.\nIn the present study we investigated the possible involvement of the mitogen-activated protein kinase family members extracellular-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) in mediating IL-6 gene expression in human monocytes, in particular their role in enhancing NF-kappa B activity. Freshly isolated monocytes treated with the protein phosphatase inhibitor okadaic acid secreted high levels of IL-6 protein, which coincided with enhanced binding activity of NF-kappa B as well as with phosphorylation and activation of the ERK1/2 and JNK proteins. The ERK pathway-specific inhibitor PD98059 inhibited IL-6 secretion from monocytes. Transient overexpression of inactive mutants of either Raf-1 or JNK1 showed that both pathways were involved in kappa B-dependent IL-6 promoter activity. By using PD98059, we demonstrated that the Raf1/MEK1/ERK1/2 pathway did not affect the DNA binding of NF-kappa B but, rather, acted at the level of transcriptional activity of NF-kappa B. Interestingly, it was shown that NF-kappa B-mediated gene transcription, both in the context of the IL-6 promoter as well as on its own, was dependent on both serine kinase activity and interaction with c-Jun protein. We conclude that okadaic acid-induced IL-6 gene expression is at least partly mediated through the ERK1/2 and JNK pathway-dependent activation of NF-kappa B transcriptional capacity. Our results suggest that the JNK pathway may regulate NF-kappa B-mediated gene transcription through its phosphorylation and activation of c-Jun."}

    genia-medco-coref

    {"project":"genia-medco-coref","denotations":[{"id":"C1","span":{"begin":36,"end":57},"obj":"NP"},{"id":"C2","span":{"begin":63,"end":68},"obj":"NP"},{"id":"C3","span":{"begin":125,"end":140},"obj":"NP"},{"id":"C4","span":{"begin":207,"end":336},"obj":"NP"},{"id":"C5","span":{"begin":374,"end":389},"obj":"NP"},{"id":"C6","span":{"begin":405,"end":410},"obj":"NP"},{"id":"C7","span":{"begin":546,"end":573},"obj":"NP"},{"id":"C8","span":{"begin":575,"end":580},"obj":"NP"},{"id":"C9","span":{"begin":625,"end":635},"obj":"NP"},{"id":"C10","span":{"begin":686,"end":713},"obj":"NP"},{"id":"C11","span":{"begin":719,"end":757},"obj":"NP"},{"id":"C12","span":{"begin":788,"end":797},"obj":"NP"},{"id":"C13","span":{"begin":962,"end":969},"obj":"NP"},{"id":"C14","span":{"begin":1055,"end":1065},"obj":"NP"},{"id":"C15","span":{"begin":1129,"end":1139},"obj":"NP"},{"id":"C16","span":{"begin":1174,"end":1212},"obj":"NP"},{"id":"C17","span":{"begin":1269,"end":1272},"obj":"NP"},{"id":"C18","span":{"begin":1344,"end":1357},"obj":"NP"},{"id":"C19","span":{"begin":1596,"end":1634},"obj":"NP"},{"id":"C20","span":{"begin":1643,"end":1646},"obj":"NP"},{"id":"C21","span":{"begin":1681,"end":1686},"obj":"NP"}],"relations":[{"id":"R1","pred":"coref-ident","subj":"C5","obj":"C3"},{"id":"R2","pred":"coref-pron","subj":"C6","obj":"C4"},{"id":"R3","pred":"coref-relat","subj":"C8","obj":"C7"},{"id":"R4","pred":"coref-ident","subj":"C10","obj":"C4"},{"id":"R5","pred":"coref-ident","subj":"C12","obj":"C5"},{"id":"R6","pred":"coref-ident","subj":"C13","obj":"C11"},{"id":"R7","pred":"coref-ident","subj":"C14","obj":"C9"},{"id":"R8","pred":"coref-ident","subj":"C15","obj":"C14"},{"id":"R9","pred":"coref-pron","subj":"C17","obj":"C16"},{"id":"R10","pred":"coref-ident","subj":"C18","obj":"C2"},{"id":"R11","pred":"coref-ident","subj":"C19","obj":"C16"},{"id":"R12","pred":"coref-pron","subj":"C20","obj":"C1"},{"id":"R13","pred":"coref-ident","subj":"C21","obj":"C18"}],"text":"Extracellular-regulated kinase 1/2, Jun N-terminal kinase, and c-Jun are involved in NF-kappa B-dependent IL-6 expression in human monocytes.\nIn the present study we investigated the possible involvement of the mitogen-activated protein kinase family members extracellular-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) in mediating IL-6 gene expression in human monocytes, in particular their role in enhancing NF-kappa B activity. Freshly isolated monocytes treated with the protein phosphatase inhibitor okadaic acid secreted high levels of IL-6 protein, which coincided with enhanced binding activity of NF-kappa B as well as with phosphorylation and activation of the ERK1/2 and JNK proteins. The ERK pathway-specific inhibitor PD98059 inhibited IL-6 secretion from monocytes. Transient overexpression of inactive mutants of either Raf-1 or JNK1 showed that both pathways were involved in kappa B-dependent IL-6 promoter activity. By using PD98059, we demonstrated that the Raf1/MEK1/ERK1/2 pathway did not affect the DNA binding of NF-kappa B but, rather, acted at the level of transcriptional activity of NF-kappa B. Interestingly, it was shown that NF-kappa B-mediated gene transcription, both in the context of the IL-6 promoter as well as on its own, was dependent on both serine kinase activity and interaction with c-Jun protein. We conclude that okadaic acid-induced IL-6 gene expression is at least partly mediated through the ERK1/2 and JNK pathway-dependent activation of NF-kappa B transcriptional capacity. Our results suggest that the JNK pathway may regulate NF-kappa B-mediated gene transcription through its phosphorylation and activation of c-Jun."}

    GENIAcorpus

    {"project":"GENIAcorpus","denotations":[{"id":"T1","span":{"begin":0,"end":34},"obj":"protein_molecule"},{"id":"T2","span":{"begin":36,"end":57},"obj":"protein_molecule"},{"id":"T3","span":{"begin":63,"end":68},"obj":"protein_molecule"},{"id":"T4","span":{"begin":85,"end":95},"obj":"protein_complex"},{"id":"T5","span":{"begin":106,"end":110},"obj":"protein_molecule"},{"id":"T6","span":{"begin":211,"end":250},"obj":"protein_family_or_group"},{"id":"T7","span":{"begin":259,"end":293},"obj":"protein_molecule"},{"id":"T8","span":{"begin":295,"end":301},"obj":"protein_molecule"},{"id":"T9","span":{"begin":309,"end":330},"obj":"protein_molecule"},{"id":"T10","span":{"begin":332,"end":335},"obj":"protein_molecule"},{"id":"T11","span":{"begin":350,"end":354},"obj":"protein_molecule"},{"id":"T12","span":{"begin":355,"end":370},"obj":"other_name"},{"id":"T13","span":{"begin":374,"end":389},"obj":"cell_type"},{"id":"T14","span":{"begin":429,"end":439},"obj":"protein_complex"},{"id":"T15","span":{"begin":494,"end":523},"obj":"other_organic_compound"},{"id":"T16","span":{"begin":524,"end":536},"obj":"other_organic_compound"},{"id":"T17","span":{"begin":561,"end":565},"obj":"protein_molecule"},{"id":"T18","span":{"begin":625,"end":635},"obj":"protein_complex"},{"id":"T19","span":{"begin":652,"end":667},"obj":"other_name"},{"id":"T20","span":{"begin":672,"end":682},"obj":"other_name"},{"id":"T21","span":{"begin":719,"end":749},"obj":"other_organic_compound"},{"id":"T22","span":{"begin":750,"end":757},"obj":"other_organic_compound"},{"id":"T23","span":{"begin":768,"end":772},"obj":"protein_molecule"},{"id":"T24","span":{"begin":788,"end":797},"obj":"cell_type"},{"id":"T25","span":{"begin":854,"end":859},"obj":"protein_molecule"},{"id":"T26","span":{"begin":863,"end":867},"obj":"protein_molecule"},{"id":"T27","span":{"begin":911,"end":928},"obj":"other_name"},{"id":"T28","span":{"begin":929,"end":933},"obj":"protein_molecule"},{"id":"T29","span":{"begin":962,"end":969},"obj":"other_organic_compound"},{"id":"T30","span":{"begin":996,"end":1006},"obj":"other_name"},{"id":"T31","span":{"begin":1006,"end":1012},"obj":"protein_molecule"},{"id":"T32","span":{"begin":1055,"end":1065},"obj":"protein_complex"},{"id":"T33","span":{"begin":1101,"end":1125},"obj":"other_name"},{"id":"T34","span":{"begin":1129,"end":1139},"obj":"protein_complex"},{"id":"T35","span":{"begin":1174,"end":1184},"obj":"protein_complex"},{"id":"T36","span":{"begin":1241,"end":1245},"obj":"protein_molecule"},{"id":"T37","span":{"begin":1300,"end":1306},"obj":"amino_acid_monomer"},{"id":"T38","span":{"begin":1344,"end":1349},"obj":"protein_molecule"},{"id":"T39","span":{"begin":1376,"end":1388},"obj":"other_organic_compound"},{"id":"T40","span":{"begin":1397,"end":1401},"obj":"protein_molecule"},{"id":"T41","span":{"begin":1402,"end":1417},"obj":"other_name"},{"id":"T42","span":{"begin":1458,"end":1464},"obj":"protein_molecule"},{"id":"T43","span":{"begin":1469,"end":1472},"obj":"protein_molecule"},{"id":"T44","span":{"begin":1491,"end":1501},"obj":"other_name"},{"id":"T45","span":{"begin":1505,"end":1515},"obj":"protein_complex"},{"id":"T46","span":{"begin":1516,"end":1540},"obj":"other_name"},{"id":"T47","span":{"begin":1571,"end":1574},"obj":"protein_molecule"},{"id":"T48","span":{"begin":1596,"end":1606},"obj":"protein_complex"},{"id":"T49","span":{"begin":1647,"end":1662},"obj":"other_name"},{"id":"T50","span":{"begin":1667,"end":1677},"obj":"other_name"},{"id":"T51","span":{"begin":1681,"end":1686},"obj":"protein_molecule"}],"text":"Extracellular-regulated kinase 1/2, Jun N-terminal kinase, and c-Jun are involved in NF-kappa B-dependent IL-6 expression in human monocytes.\nIn the present study we investigated the possible involvement of the mitogen-activated protein kinase family members extracellular-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) in mediating IL-6 gene expression in human monocytes, in particular their role in enhancing NF-kappa B activity. Freshly isolated monocytes treated with the protein phosphatase inhibitor okadaic acid secreted high levels of IL-6 protein, which coincided with enhanced binding activity of NF-kappa B as well as with phosphorylation and activation of the ERK1/2 and JNK proteins. The ERK pathway-specific inhibitor PD98059 inhibited IL-6 secretion from monocytes. Transient overexpression of inactive mutants of either Raf-1 or JNK1 showed that both pathways were involved in kappa B-dependent IL-6 promoter activity. By using PD98059, we demonstrated that the Raf1/MEK1/ERK1/2 pathway did not affect the DNA binding of NF-kappa B but, rather, acted at the level of transcriptional activity of NF-kappa B. Interestingly, it was shown that NF-kappa B-mediated gene transcription, both in the context of the IL-6 promoter as well as on its own, was dependent on both serine kinase activity and interaction with c-Jun protein. We conclude that okadaic acid-induced IL-6 gene expression is at least partly mediated through the ERK1/2 and JNK pathway-dependent activation of NF-kappa B transcriptional capacity. Our results suggest that the JNK pathway may regulate NF-kappa B-mediated gene transcription through its phosphorylation and activation of c-Jun."}

    metamap-sample

    {"project":"metamap-sample","denotations":[{"id":"T1","span":{"begin":375,"end":380},"obj":"C0086418"},{"id":"T2","span":{"begin":126,"end":131},"obj":"C0086418"},{"id":"T3","span":{"begin":789,"end":798},"obj":"C0026473"},{"id":"T4","span":{"begin":468,"end":477},"obj":"C0026473"},{"id":"T5","span":{"begin":381,"end":390},"obj":"C0026473"},{"id":"T6","span":{"begin":132,"end":141},"obj":"C0026473"},{"id":"T7","span":{"begin":1459,"end":1465},"obj":"C0031727"},{"id":"T8","span":{"begin":691,"end":697},"obj":"C0031727"},{"id":"T9","span":{"begin":25,"end":31},"obj":"C0031727"},{"id":"T10","span":{"begin":1175,"end":1185},"obj":"C0079904"},{"id":"T11","span":{"begin":626,"end":636},"obj":"C0079904"},{"id":"T12","span":{"begin":430,"end":440},"obj":"C0079904"},{"id":"T13","span":{"begin":86,"end":96},"obj":"C0079904"},{"id":"T14","span":{"begin":1459,"end":1465},"obj":"C0851285"},{"id":"T15","span":{"begin":1007,"end":1013},"obj":"C0851285"},{"id":"T16","span":{"begin":691,"end":697},"obj":"C0851285"},{"id":"T17","span":{"begin":274,"end":283},"obj":"C0851285"},{"id":"T18","span":{"begin":15,"end":24},"obj":"C0851285"},{"id":"T19","span":{"begin":64,"end":69},"obj":"C0162508"},{"id":"T20","span":{"begin":864,"end":868},"obj":"C1367731"},{"id":"T21","span":{"begin":702,"end":705},"obj":"C1367731"},{"id":"T22","span":{"begin":333,"end":336},"obj":"C1367731"},{"id":"T23","span":{"begin":37,"end":58},"obj":"C1367731"},{"id":"T24","span":{"begin":900,"end":908},"obj":"C1314939"},{"id":"T25","span":{"begin":193,"end":204},"obj":"C1314939"},{"id":"T26","span":{"begin":74,"end":81},"obj":"C1314939"},{"id":"T27","span":{"begin":1408,"end":1418},"obj":"C0185117"},{"id":"T28","span":{"begin":361,"end":371},"obj":"C0185117"},{"id":"T29","span":{"begin":112,"end":122},"obj":"C0185117"},{"id":"T30","span":{"begin":1398,"end":1402},"obj":"C1334122"},{"id":"T31","span":{"begin":1398,"end":1407},"obj":"C1334122"},{"id":"T32","span":{"begin":1242,"end":1246},"obj":"C1334122"},{"id":"T33","span":{"begin":930,"end":934},"obj":"C1334122"},{"id":"T34","span":{"begin":351,"end":355},"obj":"C1334122"},{"id":"T35","span":{"begin":351,"end":360},"obj":"C1334122"},{"id":"T36","span":{"begin":107,"end":111},"obj":"C1334122"},{"id":"T37","span":{"begin":1398,"end":1402},"obj":"C2983957"},{"id":"T38","span":{"begin":1242,"end":1246},"obj":"C2983957"},{"id":"T39","span":{"begin":930,"end":934},"obj":"C2983957"},{"id":"T40","span":{"begin":351,"end":355},"obj":"C2983957"},{"id":"T41","span":{"begin":107,"end":111},"obj":"C2983957"},{"id":"T42","span":{"begin":1459,"end":1465},"obj":"C0521119"},{"id":"T43","span":{"begin":1007,"end":1013},"obj":"C0521119"},{"id":"T44","span":{"begin":691,"end":697},"obj":"C0521119"},{"id":"T45","span":{"begin":260,"end":273},"obj":"C0521119"},{"id":"T46","span":{"begin":1,"end":14},"obj":"C0521119"},{"id":"T47","span":{"begin":1482,"end":1491},"obj":"C0851827"},{"id":"T48","span":{"begin":1283,"end":1292},"obj":"C0851827"},{"id":"T49","span":{"begin":920,"end":928},"obj":"C0851827"},{"id":"T50","span":{"begin":97,"end":106},"obj":"C0851827"},{"id":"T51","span":{"begin":1617,"end":1635},"obj":"C0040649"},{"id":"T52","span":{"begin":1517,"end":1531},"obj":"C0040649"},{"id":"T53","span":{"begin":1195,"end":1213},"obj":"C0040649"},{"id":"T54","span":{"begin":1102,"end":1117},"obj":"C0040649"},{"id":"T55","span":{"begin":1572,"end":1583},"obj":"C1621396"},{"id":"T56","span":{"begin":1470,"end":1481},"obj":"C1621396"},{"id":"T57","span":{"begin":308,"end":331},"obj":"C0380051"},{"id":"T58","span":{"begin":1363,"end":1371},"obj":"C0917903"},{"id":"T59","span":{"begin":1377,"end":1389},"obj":"C0069389"},{"id":"T60","span":{"begin":1648,"end":1663},"obj":"C0031715"},{"id":"T61","span":{"begin":653,"end":668},"obj":"C0031715"},{"id":"T62","span":{"begin":1080,"end":1085},"obj":"C0079613"},{"id":"T63","span":{"begin":1403,"end":1418},"obj":"C0017262"},{"id":"T64","span":{"begin":356,"end":371},"obj":"C0017262"},{"id":"T65","span":{"begin":562,"end":574},"obj":"C0021760"},{"id":"T66","span":{"begin":720,"end":731},"obj":"C3179234"},{"id":"T67","span":{"begin":1030,"end":1036},"obj":"C0001721"},{"id":"T68","span":{"begin":1608,"end":1616},"obj":"C0127400"},{"id":"T69","span":{"begin":1438,"end":1446},"obj":"C0127400"},{"id":"T70","span":{"begin":1186,"end":1194},"obj":"C0127400"},{"id":"T71","span":{"begin":1164,"end":1169},"obj":"C1547282"},{"id":"T72","span":{"begin":869,"end":875},"obj":"C1547282"},{"id":"T73","span":{"begin":963,"end":970},"obj":"C0298346"},{"id":"T74","span":{"begin":751,"end":758},"obj":"C0298346"},{"id":"T75","span":{"begin":1014,"end":1021},"obj":"C1704259"},{"id":"T76","span":{"begin":886,"end":894},"obj":"C1704259"},{"id":"T77","span":{"begin":1398,"end":1407},"obj":"C1704829"},{"id":"T78","span":{"begin":351,"end":360},"obj":"C1704829"},{"id":"T79","span":{"begin":1668,"end":1678},"obj":"C1879547"},{"id":"T80","span":{"begin":673,"end":683},"obj":"C1879547"},{"id":"T81","span":{"begin":1259,"end":1263},"obj":"C0205170"},{"id":"T82","span":{"begin":640,"end":644},"obj":"C0205170"},{"id":"T83","span":{"begin":1247,"end":1255},"obj":"C0086860"},{"id":"T84","span":{"begin":935,"end":943},"obj":"C0086860"},{"id":"T85","span":{"begin":944,"end":952},"obj":"C1561536"},{"id":"T86","span":{"begin":441,"end":449},"obj":"C1561536"},{"id":"T87","span":{"begin":597,"end":605},"obj":"C2349975"},{"id":"T88","span":{"begin":420,"end":429},"obj":"C2349975"},{"id":"T89","span":{"begin":1684,"end":1687},"obj":"C3536909"},{"id":"T90","span":{"begin":1347,"end":1350},"obj":"C3536909"},{"id":"T91","span":{"begin":706,"end":714},"obj":"C0033684"},{"id":"T92","span":{"begin":538,"end":546},"obj":"C1327616"},{"id":"T93","span":{"begin":759,"end":767},"obj":"C0311403"},{"id":"T94","span":{"begin":167,"end":179},"obj":"C1292732"},{"id":"T95","span":{"begin":341,"end":350},"obj":"C0086597"},{"id":"T96","span":{"begin":1026,"end":1029},"obj":"C1518422"},{"id":"T97","span":{"begin":957,"end":962},"obj":"C1524063"},{"id":"T98","span":{"begin":1555,"end":1562},"obj":"C1705535"},{"id":"T99","span":{"begin":1547,"end":1554},"obj":"C2825142"},{"id":"T100","span":{"begin":769,"end":783},"obj":"C3156665"},{"id":"T101","span":{"begin":150,"end":157},"obj":"C0150312"},{"id":"T102","span":{"begin":158,"end":163},"obj":"C2603343"},{"id":"T103","span":{"begin":1492,"end":1516},"obj":"C1749855"},{"id":"T104","span":{"begin":245,"end":259},"obj":"C0086282"},{"id":"T105","span":{"begin":495,"end":524},"obj":"C1514560"},{"id":"T106","span":{"begin":1041,"end":1052},"obj":"C1148673"},{"id":"T107","span":{"begin":478,"end":490},"obj":"C0332293"},{"id":"T108","span":{"begin":1328,"end":1339},"obj":"C1704675"},{"id":"T109","span":{"begin":552,"end":558},"obj":"C0441889"},{"id":"T110","span":{"begin":412,"end":416},"obj":"C1705810"},{"id":"T111","span":{"begin":1215,"end":1219},"obj":"C0238767"},{"id":"T112","span":{"begin":606,"end":613},"obj":"C1167622"},{"id":"T113","span":{"begin":1227,"end":1234},"obj":"C0449255"},{"id":"T114","span":{"begin":912,"end":917},"obj":"C0439099"},{"id":"T115","span":{"begin":810,"end":824},"obj":"C1514559"},{"id":"T116","span":{"begin":184,"end":192},"obj":"C2362652"},{"id":"T117","span":{"begin":1301,"end":1323},"obj":"C2261503"},{"id":"T118","span":{"begin":459,"end":467},"obj":"C0205409"},{"id":"T119","span":{"begin":741,"end":750},"obj":"C1999216"},{"id":"T120","span":{"begin":732,"end":740},"obj":"C0205369"},{"id":"T121","span":{"begin":1390,"end":1397},"obj":"C0205263"},{"id":"T122","span":{"begin":1002,"end":1006},"obj":"C1334474"},{"id":"T123","span":{"begin":855,"end":860},"obj":"C1706586"},{"id":"T124","span":{"begin":547,"end":551},"obj":"C1299351"},{"id":"T125","span":{"begin":837,"end":844},"obj":"C0596988"},{"id":"T126","span":{"begin":828,"end":836},"obj":"C0205254"},{"id":"T127","span":{"begin":800,"end":809},"obj":"C0205374"},{"id":"T128","span":{"begin":1533,"end":1541},"obj":"C1516240"}],"text":"Extracellular-regulated kinase 1/2, Jun N-terminal kinase, and c-Jun are involved in NF-kappa B-dependent IL-6 expression in human monocytes.\nIn the present study we investigated the possible involvement of the mitogen-activated protein kinase family members extracellular-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) in mediating IL-6 gene expression in human monocytes, in particular their role in enhancing NF-kappa B activity. Freshly isolated monocytes treated with the protein phosphatase inhibitor okadaic acid secreted high levels of IL-6 protein, which coincided with enhanced binding activity of NF-kappa B as well as with phosphorylation and activation of the ERK1/2 and JNK proteins. The ERK pathway-specific inhibitor PD98059 inhibited IL-6 secretion from monocytes. Transient overexpression of inactive mutants of either Raf-1 or JNK1 showed that both pathways were involved in kappa B-dependent IL-6 promoter activity. By using PD98059, we demonstrated that the Raf1/MEK1/ERK1/2 pathway did not affect the DNA binding of NF-kappa B but, rather, acted at the level of transcriptional activity of NF-kappa B. Interestingly, it was shown that NF-kappa B-mediated gene transcription, both in the context of the IL-6 promoter as well as on its own, was dependent on both serine kinase activity and interaction with c-Jun protein. We conclude that okadaic acid-induced IL-6 gene expression is at least partly mediated through the ERK1/2 and JNK pathway-dependent activation of NF-kappa B transcriptional capacity. Our results suggest that the JNK pathway may regulate NF-kappa B-mediated gene transcription through its phosphorylation and activation of c-Jun."}