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PubMed:10202034 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-34 protein denotes Extracellular-regulated kinase 1/2
T2 36-57 protein denotes Jun N-terminal kinase
T3 63-68 protein denotes c-Jun
T4 85-95 protein denotes NF-kappa B
T5 106-110 protein denotes IL-6
T6 211-250 protein denotes mitogen-activated protein kinase family
T7 259-293 protein denotes extracellular-regulated kinase 1/2
T8 295-301 protein denotes ERK1/2
T9 309-330 protein denotes Jun N-terminal kinase
T10 332-335 protein denotes JNK
T11 350-354 protein denotes IL-6
T12 374-389 cell_type denotes human monocytes
T13 429-439 protein denotes NF-kappa B
T14 561-573 protein denotes IL-6 protein
T15 625-635 protein denotes NF-kappa B
T16 690-713 protein denotes ERK1/2 and JNK proteins
T17 768-772 protein denotes IL-6
T18 788-797 cell_type denotes monocytes
T19 854-859 protein denotes Raf-1
T20 863-867 protein denotes JNK1
T21 929-933 protein denotes IL-6
T22 1006-1012 protein denotes ERK1/2
T23 1055-1065 protein denotes NF-kappa B
T24 1129-1139 protein denotes NF-kappa B
T25 1174-1184 protein denotes NF-kappa B
T26 1241-1254 DNA denotes IL-6 promoter
T27 1344-1357 protein denotes c-Jun protein
T28 1397-1401 protein denotes IL-6
T29 1458-1464 protein denotes ERK1/2
T30 1469-1472 protein denotes JNK
T31 1505-1515 protein denotes NF-kappa B
T32 1571-1574 protein denotes JNK
T33 1596-1606 protein denotes NF-kappa B
T34 1681-1686 protein denotes c-Jun

semrep-sample

Id Subject Object Predicate Lexical cue
E1-ti-1 0-13 cui:C0521119 denotes Extracellular
E2-ti-1 24-30 cui:C0031727 denotes kinase
E3-ti-1 42-50 cui:C0205088 denotes terminal
E4-ti-1 36-57 cui:C0872053 denotes Jun N-terminal kinase
E5-ti-1 63-68 cui:C0085942 denotes c-Jun
E6-ti-1 85-95 cui:C0079904 denotes NF-kappa B
E7-ti-1 106-110 cui:C0021760 denotes IL-6
E8-ti-1 111-121 cui:C0185117 denotes expression
E9-ti-1 125-130 cui:C0020114 denotes human
E10-ti-1 131-140 cui:C0026473 denotes monocytes
T1 73-81 INTERACTS_WITH denotes involved
T2 73-81 INTERACTS_WITH denotes involved
T3 125-140 PART_OF denotes human monocytes
E1-ab-1 149-156 cui:C0150312 denotes present
E2-ab-1 157-162 cui:C0008972 denotes study
E3-ab-1 183-191 cui:C0332149 denotes possible
E4-ab-1 244-258 cui:C0086282 denotes family members
E5-ab-1 259-272 cui:C0521119 denotes extracellular
E6-ab-1 211-293 cui:C0216471 denotes mitogen-activated protein kinase family members extracellular-regulated kinase 1/2
E7-ab-1 307-330 cui:C0248813 denotes c-Jun N-terminal kinase
E8-ab-1 332-335 cui:C1367731 denotes JNK
E9-ab-1 350-359 cui:C1334122 denotes IL-6 gene
E10-ab-1 360-370 cui:C0185117 denotes expression
E11-ab-1 374-379 cui:C0020114 denotes human
E12-ab-1 380-389 cui:C0026473 denotes monocytes
E13-ab-1 411-415 cui:C0035820 denotes role
E14-ab-1 429-439 cui:C0079904 denotes NF-kappa B
E15-ab-1 440-448 cui:C0439167 denotes activity
T4 340-349 INTERACTS_WITH denotes mediating
T5 374-389 PART_OF denotes human monocytes
T6 371-373 LOCATION_OF denotes in
E1-ab-2 458-466 cui:C0205409 denotes isolated
E2-ab-2 467-476 cui:C0026473 denotes monocytes
E3-ab-2 494-523 cui:C1514560 denotes protein phosphatase inhibitor
E4-ab-2 524-536 cui:C0069389 denotes okadaic acid
E5-ab-2 546-550 cui:C0205250 denotes high
E6-ab-2 551-557 cui:C0441889 denotes levels
E7-ab-2 561-565 cui:C0021760 denotes IL-6
E8-ab-2 566-573 cui:C0033684 denotes protein
E9-ab-2 613-621 cui:C0439167 denotes activity
E10-ab-2 625-635 cui:C0079904 denotes NF-kappa B
E11-ab-2 652-667 cui:C0031715 denotes phosphorylation
E12-ab-2 690-696 cui:C0521119 denotes ERK1/2
E13-ab-2 690-696 cui:C0031727 denotes ERK1/2
E14-ab-2 701-704 cui:C1367731 denotes JNK
E15-ab-2 705-713 cui:C0033684 denotes proteins
T7 537-545 PRODUCES denotes secreted
E1-ab-3 719-722 entrez:2048,5594 denotes ERK
E2-ab-3 723-730 cui:C0243123 denotes pathway
E3-ab-3 740-749 cui:C0243077 denotes inhibitor
E4-ab-3 750-757 cui:C0298346 denotes PD98059
E5-ab-3 768-772 cui:C0021760 denotes IL-6
E6-ab-3 773-782 cui:C0015283 denotes secretion
E7-ab-3 788-797 cui:C0026473 denotes monocytes
T8 783-787 LOCATION_OF denotes from
E1-ab-4 799-808 cui:C0205374 denotes Transient
E2-ab-4 827-835 cui:C0205254 denotes inactive
E3-ab-4 836-843 cui:C0596988 denotes mutants
E4-ab-4 854-859 cui:C0812215 denotes Raf-1
E5-ab-4 863-867 cui:C1367731 denotes JNK1
E6-ab-4 911-916 cui:C0439099 denotes kappa
E7-ab-4 929-933 cui:C0021760 denotes IL-6
E8-ab-4 943-951 cui:C0439167 denotes activity
T9 899-907 INTERACTS_WITH denotes involved
E1-ab-5 962-969 cui:C0298346 denotes PD98059
E2-ab-5 1001-1005 cui:C1334474 denotes MEK1
E3-ab-5 1006-1012 cui:C0521119 denotes ERK1/2
E4-ab-5 996-1012 cui:C0139905 denotes Raf1/MEK1/ERK1/2
E5-ab-5 1013-1020 cui:C0243123 denotes pathway
E6-ab-5 1025-1028 cui:C1518422 denotes not
E7-ab-5 1040-1051 cui:C1148673 denotes DNA binding
E8-ab-5 1055-1065 cui:C0079904 denotes NF-kappa B
E9-ab-5 1101-1116 cui:C0040649 denotes transcriptional
E10-ab-5 1117-1125 cui:C0439167 denotes activity
E11-ab-5 1129-1139 cui:C0079904 denotes NF-kappa B
T10 1029-1035 AFFECTS denotes affect
E1-ab-6 1174-1184 cui:C0079904 denotes NF-kappa B
E2-ab-6 1185-1193 cui:C0086597 denotes mediated
E3-ab-6 1194-1212 cui:C0040649 denotes gene transcription
E4-ab-6 1241-1245 cui:C0021760 denotes IL-6
E5-ab-6 1273-1276 cui:C1546511 denotes own
E6-ab-6 1300-1306 cui:C0036720 denotes serine
E7-ab-6 1307-1322 cui:C1150423 denotes kinase activity
E8-ab-6 1327-1338 cui:C0687133 denotes interaction
E9-ab-6 1344-1357 cui:C0085296 denotes c-Jun protein
T11 1282-1291 STIMULATES denotes dependent
E1-ab-7 1376-1388 cui:C0069389 denotes okadaic acid
E2-ab-7 1389-1396 cui:C0205263 denotes induced
E3-ab-7 1397-1406 cui:C1334122 denotes IL-6 gene
E4-ab-7 1407-1417 cui:C0185117 denotes expression
E5-ab-7 1458-1464 cui:C0521119 denotes ERK1/2
E6-ab-7 1458-1464 cui:C0031727 denotes ERK1/2
E7-ab-7 1469-1472 cui:C1367731 denotes JNK
E8-ab-7 1473-1480 cui:C0243123 denotes pathway
E9-ab-7 1505-1515 cui:C0079904 denotes NF-kappa B
E10-ab-7 1516-1531 cui:C0040649 denotes transcriptional
E11-ab-7 1532-1540 cui:C1516240 denotes capacity
E1-ab-8 1546-1553 cui:C1274040 denotes results
E2-ab-8 1571-1574 cui:C1367731 denotes JNK
E3-ab-8 1575-1582 cui:C0243123 denotes pathway
E4-ab-8 1596-1606 cui:C0079904 denotes NF-kappa B
E5-ab-8 1607-1615 cui:C0086597 denotes mediated
E6-ab-8 1616-1634 cui:C0040649 denotes gene transcription
E7-ab-8 1647-1662 cui:C0031715 denotes phosphorylation
E8-ab-8 1681-1686 cui:C0085942 denotes c-Jun
T12 1587-1595 AFFECTS denotes regulate
R1 E5-ti-1 T1 subjectOf c-Jun,involved
R2 E7-ti-1 T1 objectOf IL-6,involved
R3 E4-ti-1 T2 subjectOf Jun N-terminal kinase,involved
R4 E7-ti-1 T2 objectOf IL-6,involved
R5 E10-ti-1 T3 subjectOf monocytes,human monocytes
R6 E9-ti-1 T3 objectOf human,human monocytes
R7 E7-ab-1 T4 subjectOf c-Jun N-terminal kinase,mediating
R8 E9-ab-1 T4 objectOf IL-6 gene,mediating
R9 E12-ab-1 T5 subjectOf monocytes,human monocytes
R10 E11-ab-1 T5 objectOf human,human monocytes
R11 E12-ab-1 T6 subjectOf monocytes,in
R12 E9-ab-1 T6 objectOf IL-6 gene,in
R13 E2-ab-2 T7 subjectOf monocytes,secreted
R14 E7-ab-2 T7 objectOf IL-6,secreted
R15 E7-ab-3 T8 subjectOf monocytes,from
R16 E5-ab-3 T8 objectOf IL-6,from
R17 E5-ab-4 T9 subjectOf JNK1,involved
R18 E7-ab-4 T9 objectOf IL-6,involved
R19 E1-ab-5 T10 subjectOf PD98059,affect
R20 E7-ab-5 T10 objectOf DNA binding,affect
R21 E4-ab-6 T11 subjectOf IL-6,dependent
R22 E9-ab-6 T11 objectOf c-Jun protein,dependent
R23 E2-ab-8 T12 subjectOf JNK,regulate
R24 E6-ab-8 T12 objectOf gene transcription,regulate

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-141 Sentence denotes Extracellular-regulated kinase 1/2, Jun N-terminal kinase, and c-Jun are involved in NF-kappa B-dependent IL-6 expression in human monocytes.
S2 142-449 Sentence denotes In the present study we investigated the possible involvement of the mitogen-activated protein kinase family members extracellular-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) in mediating IL-6 gene expression in human monocytes, in particular their role in enhancing NF-kappa B activity.
S3 450-714 Sentence denotes Freshly isolated monocytes treated with the protein phosphatase inhibitor okadaic acid secreted high levels of IL-6 protein, which coincided with enhanced binding activity of NF-kappa B as well as with phosphorylation and activation of the ERK1/2 and JNK proteins.
S4 715-798 Sentence denotes The ERK pathway-specific inhibitor PD98059 inhibited IL-6 secretion from monocytes.
S5 799-952 Sentence denotes Transient overexpression of inactive mutants of either Raf-1 or JNK1 showed that both pathways were involved in kappa B-dependent IL-6 promoter activity.
S6 953-1140 Sentence denotes By using PD98059, we demonstrated that the Raf1/MEK1/ERK1/2 pathway did not affect the DNA binding of NF-kappa B but, rather, acted at the level of transcriptional activity of NF-kappa B.
S7 1141-1358 Sentence denotes Interestingly, it was shown that NF-kappa B-mediated gene transcription, both in the context of the IL-6 promoter as well as on its own, was dependent on both serine kinase activity and interaction with c-Jun protein.
S8 1359-1541 Sentence denotes We conclude that okadaic acid-induced IL-6 gene expression is at least partly mediated through the ERK1/2 and JNK pathway-dependent activation of NF-kappa B transcriptional capacity.
S9 1542-1687 Sentence denotes Our results suggest that the JNK pathway may regulate NF-kappa B-mediated gene transcription through its phosphorylation and activation of c-Jun.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 36-57 NP denotes Jun N-terminal kinase
C2 63-68 NP denotes c-Jun
C3 125-140 NP denotes human monocytes
C4 207-336 NP denotes the mitogen-activated protein kinase family members extracellular-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK)
C5 374-389 NP denotes human monocytes
C6 405-410 NP denotes their
C7 546-573 NP denotes high levels of IL-6 protein
C8 575-580 NP denotes which
C9 625-635 NP denotes NF-kappa B
C10 686-713 NP denotes the ERK1/2 and JNK proteins
C11 719-757 NP denotes ERK pathway-specific inhibitor PD98059
C12 788-797 NP denotes monocytes
C13 962-969 NP denotes PD98059
C14 1055-1065 NP denotes NF-kappa B
C15 1129-1139 NP denotes NF-kappa B
C16 1174-1212 NP denotes NF-kappa B-mediated gene transcription
C17 1269-1272 NP denotes its
C18 1344-1357 NP denotes c-Jun protein
C19 1596-1634 NP denotes NF-kappa B-mediated gene transcription
C20 1643-1646 NP denotes its
C21 1681-1686 NP denotes c-Jun
R1 C5 C3 coref-ident human monocytes,human monocytes
R2 C6 C4 coref-pron their,the mitogen-activated protein kinase family members extracellular-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK)
R3 C8 C7 coref-relat which,high levels of IL-6 protein
R4 C10 C4 coref-ident the ERK1/2 and JNK proteins,the mitogen-activated protein kinase family members extracellular-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK)
R5 C12 C5 coref-ident monocytes,human monocytes
R6 C13 C11 coref-ident PD98059,ERK pathway-specific inhibitor PD98059
R7 C14 C9 coref-ident NF-kappa B,NF-kappa B
R8 C15 C14 coref-ident NF-kappa B,NF-kappa B
R9 C17 C16 coref-pron its,NF-kappa B-mediated gene transcription
R10 C18 C2 coref-ident c-Jun protein,c-Jun
R11 C19 C16 coref-ident NF-kappa B-mediated gene transcription,NF-kappa B-mediated gene transcription
R12 C20 C1 coref-pron its,Jun N-terminal kinase
R13 C21 C18 coref-ident c-Jun,c-Jun protein

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-34 protein_molecule denotes Extracellular-regulated kinase 1/2
T2 36-57 protein_molecule denotes Jun N-terminal kinase
T3 63-68 protein_molecule denotes c-Jun
T4 85-95 protein_complex denotes NF-kappa B
T5 106-110 protein_molecule denotes IL-6
T6 211-250 protein_family_or_group denotes mitogen-activated protein kinase family
T7 259-293 protein_molecule denotes extracellular-regulated kinase 1/2
T8 295-301 protein_molecule denotes ERK1/2
T9 309-330 protein_molecule denotes Jun N-terminal kinase
T10 332-335 protein_molecule denotes JNK
T11 350-354 protein_molecule denotes IL-6
T12 355-370 other_name denotes gene expression
T13 374-389 cell_type denotes human monocytes
T14 429-439 protein_complex denotes NF-kappa B
T15 494-523 other_organic_compound denotes protein phosphatase inhibitor
T16 524-536 other_organic_compound denotes okadaic acid
T17 561-565 protein_molecule denotes IL-6
T18 625-635 protein_complex denotes NF-kappa B
T19 652-667 other_name denotes phosphorylation
T20 672-682 other_name denotes activation
T21 719-749 other_organic_compound denotes ERK pathway-specific inhibitor
T22 750-757 other_organic_compound denotes PD98059
T23 768-772 protein_molecule denotes IL-6
T24 788-797 cell_type denotes monocytes
T25 854-859 protein_molecule denotes Raf-1
T26 863-867 protein_molecule denotes JNK1
T27 911-928 other_name denotes kappa B-dependent
T28 929-933 protein_molecule denotes IL-6
T29 962-969 other_organic_compound denotes PD98059
T30 996-1006 other_name denotes Raf1/MEK1/
T31 1006-1012 protein_molecule denotes ERK1/2
T32 1055-1065 protein_complex denotes NF-kappa B
T33 1101-1125 other_name denotes transcriptional activity
T34 1129-1139 protein_complex denotes NF-kappa B
T35 1174-1184 protein_complex denotes NF-kappa B
T36 1241-1245 protein_molecule denotes IL-6
T37 1300-1306 amino_acid_monomer denotes serine
T38 1344-1349 protein_molecule denotes c-Jun
T39 1376-1388 other_organic_compound denotes okadaic acid
T40 1397-1401 protein_molecule denotes IL-6
T41 1402-1417 other_name denotes gene expression
T42 1458-1464 protein_molecule denotes ERK1/2
T43 1469-1472 protein_molecule denotes JNK
T44 1491-1501 other_name denotes activation
T45 1505-1515 protein_complex denotes NF-kappa B
T46 1516-1540 other_name denotes transcriptional capacity
T47 1571-1574 protein_molecule denotes JNK
T48 1596-1606 protein_complex denotes NF-kappa B
T49 1647-1662 other_name denotes phosphorylation
T50 1667-1677 other_name denotes activation
T51 1681-1686 protein_molecule denotes c-Jun

metamap-sample

Id Subject Object Predicate Lexical cue
T1 375-380 C0086418 denotes uman
T2 126-131 C0086418 denotes uman
T3 789-798 C0026473 denotes onocytes.
T4 468-477 C0026473 denotes onocytes
T5 381-390 C0026473 denotes onocytes,
T6 132-141 C0026473 denotes onocytes.
T7 1459-1465 C0031727 denotes RK1/2
T8 691-697 C0031727 denotes RK1/2
T9 25-31 C0031727 denotes inase
T10 1175-1185 C0079904 denotes F-kappa B-
T11 626-636 C0079904 denotes F-kappa B
T12 430-440 C0079904 denotes F-kappa B
T13 86-96 C0079904 denotes F-kappa B-
T14 1459-1465 C0851285 denotes RK1/2
T15 1007-1013 C0851285 denotes RK1/2
T16 691-697 C0851285 denotes RK1/2
T17 274-283 C0851285 denotes egulated
T18 15-24 C0851285 denotes egulated
T19 64-69 C0162508 denotes -Jun
T20 864-868 C1367731 denotes NK1
T21 702-705 C1367731 denotes NK
T22 333-336 C1367731 denotes NK)
T23 37-58 C1367731 denotes un N-terminal kinase,
T24 900-908 C1314939 denotes nvolved
T25 193-204 C1314939 denotes nvolvement
T26 74-81 C1314939 denotes nvolved
T27 1408-1418 C0185117 denotes xpression
T28 361-371 C0185117 denotes xpression
T29 112-122 C0185117 denotes xpression
T30 1398-1402 C1334122 denotes L-6
T31 1398-1407 C1334122 denotes L-6 gene
T32 1242-1246 C1334122 denotes L-6
T33 930-934 C1334122 denotes L-6
T34 351-355 C1334122 denotes L-6
T35 351-360 C1334122 denotes L-6 gene
T36 107-111 C1334122 denotes L-6
T37 1398-1402 C2983957 denotes L-6
T38 1242-1246 C2983957 denotes L-6
T39 930-934 C2983957 denotes L-6
T40 351-355 C2983957 denotes L-6
T41 107-111 C2983957 denotes L-6
T42 1459-1465 C0521119 denotes RK1/2
T43 1007-1013 C0521119 denotes RK1/2
T44 691-697 C0521119 denotes RK1/2
T45 260-273 C0521119 denotes xtracellular-
T46 1-14 C0521119 denotes xtracellular-
T47 1482-1491 C0851827 denotes ependent
T48 1283-1292 C0851827 denotes ependent
T49 920-928 C0851827 denotes ependent
T50 97-106 C0851827 denotes ependent
T51 1617-1635 C0040649 denotes ene transcription
T52 1517-1531 C0040649 denotes ranscriptional
T53 1195-1213 C0040649 denotes ene transcription,
T54 1102-1117 C0040649 denotes ranscriptional
T55 1572-1583 C1621396 denotes NK pathway
T56 1470-1481 C1621396 denotes NK pathway-
T57 308-331 C0380051 denotes -Jun N-terminal kinase
T58 1363-1371 C0917903 denotes onclude
T59 1377-1389 C0069389 denotes kadaic acid-
T60 1648-1663 C0031715 denotes hosphorylation
T61 653-668 C0031715 denotes hosphorylation
T62 1080-1085 C0079613 denotes cted
T63 1403-1418 C0017262 denotes ene expression
T64 356-371 C0017262 denotes ene expression
T65 562-574 C0021760 denotes L-6 protein,
T66 720-731 C3179234 denotes RK pathway-
T67 1030-1036 C0001721 denotes ffect
T68 1608-1616 C0127400 denotes ediated
T69 1438-1446 C0127400 denotes ediated
T70 1186-1194 C0127400 denotes ediated
T71 1164-1169 C1547282 denotes hown
T72 869-875 C1547282 denotes howed
T73 963-970 C0298346 denotes D98059,
T74 751-758 C0298346 denotes D98059
T75 1014-1021 C1704259 denotes athway
T76 886-894 C1704259 denotes athways
T77 1398-1407 C1704829 denotes L-6 gene
T78 351-360 C1704829 denotes L-6 gene
T79 1668-1678 C1879547 denotes ctivation
T80 673-683 C1879547 denotes ctivation
T81 1259-1263 C0205170 denotes ell
T82 640-644 C0205170 denotes ell
T83 1247-1255 C0086860 denotes romoter
T84 935-943 C0086860 denotes romoter
T85 944-952 C1561536 denotes ctivity.
T86 441-449 C1561536 denotes ctivity.
T87 597-605 C2349975 denotes nhanced
T88 420-429 C2349975 denotes nhancing
T89 1684-1687 C3536909 denotes un.
T90 1347-1350 C3536909 denotes un
T91 706-714 C0033684 denotes roteins.
T92 538-546 C1327616 denotes ecreted
T93 759-767 C0311403 denotes nhibited
T94 167-179 C1292732 denotes nvestigated
T95 341-350 C0086597 denotes ediating
T96 1026-1029 C1518422 denotes ot
T97 957-962 C1524063 denotes sing
T98 1555-1562 C1705535 denotes uggest
T99 1547-1554 C2825142 denotes esults
T100 769-783 C3156665 denotes L-6 secretion
T101 150-157 C0150312 denotes resent
T102 158-163 C2603343 denotes tudy
T103 1492-1516 C1749855 denotes ctivation of NF-kappa B
T104 245-259 C0086282 denotes amily members
T105 495-524 C1514560 denotes rotein phosphatase inhibitor
T106 1041-1052 C1148673 denotes NA binding
T107 478-490 C0332293 denotes reated with
T108 1328-1339 C1704675 denotes nteraction
T109 552-558 C0441889 denotes evels
T110 412-416 C1705810 denotes ole
T111 1215-1219 C0238767 denotes oth
T112 606-613 C1167622 denotes inding
T113 1227-1234 C0449255 denotes ontext
T114 912-917 C0439099 denotes appa
T115 810-824 C1514559 denotes verexpression
T116 184-192 C2362652 denotes ossible
T117 1301-1323 C2261503 denotes erine kinase activity
T118 459-467 C0205409 denotes solated
T119 741-750 C1999216 denotes nhibitor
T120 732-740 C0205369 denotes pecific
T121 1390-1397 C0205263 denotes nduced
T122 1002-1006 C1334474 denotes EK1/
T123 855-860 C1706586 denotes af-1
T124 547-551 C1299351 denotes igh
T125 837-844 C0596988 denotes utants
T126 828-836 C0205254 denotes nactive
T127 800-809 C0205374 denotes ransient
T128 1533-1541 C1516240 denotes apacity.