PubMed:10090947
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/10090947","sourcedb":"PubMed","sourceid":"10090947","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/10090947","text":"Constitutive activation of NF-kappaB in primary adult T-cell leukemia cells.\nHuman T-cell leukemia virus type I (HTLV-I) is an etiologic agent of adult T-cell leukemia (ATL). The viral protein Tax induces the activation and nuclear translocalization of transcription factor NF-kappaB, which is proposed to play a crucial role in the transformation of T cells by HTLV-I. However, the HTLV-I genes including Tax are not expressed significantly in primary leukemic cells from ATL patients. In this study, we examined the basis for NF-kappaB activation in freshly isolated leukemic cells from ATL patients. We found that leukemic cells from ATL patients, like HTLV-I-infected T-cell lines, display constitutive NF-kappaB DNA binding activity and increased degradation of IkappaBalpha (an inhibitor of NF-kappaB). Whereas the NF-kappaB binding activity in Tax-expressing T-cell lines consisted mostly of p50/c-Rel, fresh ATL samples contained p50/p50 and p50/p65 heterodimers. One T-cell line derived from ATL leukemic cells, TL-Om1, displayed constitutive NF-kappaB activity, as well as enhanced degradation of IkappaBalpha, despite the lack of detectable Tax expression. Interestingly, the NF-kappaB in TL-Om1 consists of p50/p50 and p50/p65 like that in fresh primary leukemic cells. Our results suggest that activation of NF-kappaB occurs through a Tax-independent mechanism in leukemic cells of ATL patients, possibly due to differential NF-kappaB subunit activation.","tracks":[{"project":"genia-medco-coref","denotations":[{"id":"C1","span":{"begin":27,"end":36},"obj":"NP"},{"id":"C2","span":{"begin":77,"end":120},"obj":"NP"},{"id":"C3","span":{"begin":175,"end":196},"obj":"NP"},{"id":"C5","span":{"begin":253,"end":283},"obj":"NP"},{"id":"C6","span":{"begin":285,"end":290},"obj":"NP"},{"id":"C7","span":{"begin":362,"end":368},"obj":"NP"},{"id":"C4","span":{"begin":253,"end":368},"obj":"NP"},{"id":"C8","span":{"begin":406,"end":409},"obj":"NP"},{"id":"C9","span":{"begin":473,"end":485},"obj":"NP"},{"id":"C10","span":{"begin":589,"end":601},"obj":"NP"},{"id":"C11","span":{"begin":637,"end":649},"obj":"NP"},{"id":"C13","span":{"begin":767,"end":807},"obj":"NP"},{"id":"C12","span":{"begin":752,"end":807},"obj":"NP"},{"id":"C14","span":{"begin":938,"end":970},"obj":"NP"},{"id":"C15","span":{"begin":1001,"end":1019},"obj":"NP"},{"id":"C16","span":{"begin":1021,"end":1027},"obj":"NP"},{"id":"C18","span":{"begin":1107,"end":1119},"obj":"NP"},{"id":"C17","span":{"begin":1092,"end":1119},"obj":"NP"},{"id":"C19","span":{"begin":1183,"end":1196},"obj":"NP"},{"id":"C20","span":{"begin":1200,"end":1206},"obj":"NP"},{"id":"C21","span":{"begin":1219,"end":1238},"obj":"NP"},{"id":"C22","span":{"begin":1244,"end":1248},"obj":"NP"},{"id":"C23","span":{"begin":1321,"end":1330},"obj":"NP"},{"id":"C24","span":{"begin":1395,"end":1407},"obj":"NP"}],"relations":[{"id":"R1","pred":"coref-relat","subj":"C6","obj":"C5"},{"id":"R2","pred":"coref-ident","subj":"C7","obj":"C2"},{"id":"R3","pred":"coref-ident","subj":"C4","obj":"C1"},{"id":"R4","pred":"coref-ident","subj":"C8","obj":"C3"},{"id":"R5","pred":"coref-ident","subj":"C10","obj":"C9"},{"id":"R6","pred":"coref-ident","subj":"C11","obj":"C10"},{"id":"R7","pred":"coref-appos","subj":"C16","obj":"C15"},{"id":"R8","pred":"coref-ident","subj":"C18","obj":"C13"},{"id":"R9","pred":"coref-ident","subj":"C17","obj":"C12"},{"id":"R10","pred":"coref-ident","subj":"C20","obj":"C15"},{"id":"R11","pred":"coref-ident","subj":"C21","obj":"C14"},{"id":"R12","pred":"coref-pron","subj":"C22","obj":"C19"},{"id":"R13","pred":"coref-ident","subj":"C23","obj":"C4"},{"id":"R14","pred":"coref-ident","subj":"C24","obj":"C11"}],"attributes":[{"subj":"C1","pred":"source","obj":"genia-medco-coref"},{"subj":"C2","pred":"source","obj":"genia-medco-coref"},{"subj":"C3","pred":"source","obj":"genia-medco-coref"},{"subj":"C5","pred":"source","obj":"genia-medco-coref"},{"subj":"C6","pred":"source","obj":"genia-medco-coref"},{"subj":"C7","pred":"source","obj":"genia-medco-coref"},{"subj":"C4","pred":"source","obj":"genia-medco-coref"},{"subj":"C8","pred":"source","obj":"genia-medco-coref"},{"subj":"C9","pred":"source","obj":"genia-medco-coref"},{"subj":"C10","pred":"source","obj":"genia-medco-coref"},{"subj":"C11","pred":"source","obj":"genia-medco-coref"},{"subj":"C13","pred":"source","obj":"genia-medco-coref"},{"subj":"C12","pred":"source","obj":"genia-medco-coref"},{"subj":"C14","pred":"source","obj":"genia-medco-coref"},{"subj":"C15","pred":"source","obj":"genia-medco-coref"},{"subj":"C16","pred":"source","obj":"genia-medco-coref"},{"subj":"C18","pred":"source","obj":"genia-medco-coref"},{"subj":"C17","pred":"source","obj":"genia-medco-coref"},{"subj":"C19","pred":"source","obj":"genia-medco-coref"},{"subj":"C20","pred":"source","obj":"genia-medco-coref"},{"subj":"C21","pred":"source","obj":"genia-medco-coref"},{"subj":"C22","pred":"source","obj":"genia-medco-coref"},{"subj":"C23","pred":"source","obj":"genia-medco-coref"},{"subj":"C24","pred":"source","obj":"genia-medco-coref"}]},{"project":"PubmedHPO","denotations":[{"id":"T1","span":{"begin":90,"end":98},"obj":"HP_0001909"},{"id":"T2","span":{"begin":159,"end":167},"obj":"HP_0001909"}],"attributes":[{"subj":"T1","pred":"source","obj":"PubmedHPO"},{"subj":"T2","pred":"source","obj":"PubmedHPO"}]},{"project":"jnlpba-st-training","denotations":[{"id":"T1","span":{"begin":27,"end":36},"obj":"protein"},{"id":"T2","span":{"begin":40,"end":75},"obj":"cell_type"},{"id":"T3","span":{"begin":179,"end":192},"obj":"protein"},{"id":"T4","span":{"begin":193,"end":196},"obj":"protein"},{"id":"T5","span":{"begin":253,"end":273},"obj":"protein"},{"id":"T6","span":{"begin":274,"end":283},"obj":"protein"},{"id":"T7","span":{"begin":351,"end":358},"obj":"cell_type"},{"id":"T8","span":{"begin":383,"end":395},"obj":"DNA"},{"id":"T9","span":{"begin":406,"end":409},"obj":"protein"},{"id":"T10","span":{"begin":445,"end":467},"obj":"cell_type"},{"id":"T11","span":{"begin":528,"end":537},"obj":"protein"},{"id":"T12","span":{"begin":552,"end":583},"obj":"cell_type"},{"id":"T13","span":{"begin":617,"end":631},"obj":"cell_type"},{"id":"T14","span":{"begin":656,"end":684},"obj":"cell_line"},{"id":"T15","span":{"begin":707,"end":716},"obj":"protein"},{"id":"T16","span":{"begin":767,"end":779},"obj":"protein"},{"id":"T17","span":{"begin":797,"end":806},"obj":"protein"},{"id":"T18","span":{"begin":821,"end":830},"obj":"protein"},{"id":"T19","span":{"begin":851,"end":878},"obj":"cell_line"},{"id":"T20","span":{"begin":899,"end":908},"obj":"protein"},{"id":"T21","span":{"begin":938,"end":970},"obj":"protein"},{"id":"T22","span":{"begin":976,"end":987},"obj":"cell_line"},{"id":"T23","span":{"begin":1005,"end":1019},"obj":"cell_type"},{"id":"T24","span":{"begin":1052,"end":1061},"obj":"protein"},{"id":"T25","span":{"begin":1107,"end":1119},"obj":"protein"},{"id":"T26","span":{"begin":1152,"end":1155},"obj":"protein"},{"id":"T27","span":{"begin":1187,"end":1196},"obj":"protein"},{"id":"T28","span":{"begin":1219,"end":1226},"obj":"protein"},{"id":"T29","span":{"begin":1231,"end":1238},"obj":"protein"},{"id":"T30","span":{"begin":1258,"end":1280},"obj":"cell_type"},{"id":"T31","span":{"begin":1321,"end":1330},"obj":"protein"},{"id":"T32","span":{"begin":1348,"end":1351},"obj":"protein"},{"id":"T33","span":{"begin":1377,"end":1391},"obj":"cell_type"},{"id":"T34","span":{"begin":1438,"end":1447},"obj":"protein"}],"attributes":[{"subj":"T1","pred":"source","obj":"jnlpba-st-training"},{"subj":"T2","pred":"source","obj":"jnlpba-st-training"},{"subj":"T3","pred":"source","obj":"jnlpba-st-training"},{"subj":"T4","pred":"source","obj":"jnlpba-st-training"},{"subj":"T5","pred":"source","obj":"jnlpba-st-training"},{"subj":"T6","pred":"source","obj":"jnlpba-st-training"},{"subj":"T7","pred":"source","obj":"jnlpba-st-training"},{"subj":"T8","pred":"source","obj":"jnlpba-st-training"},{"subj":"T9","pred":"source","obj":"jnlpba-st-training"},{"subj":"T10","pred":"source","obj":"jnlpba-st-training"},{"subj":"T11","pred":"source","obj":"jnlpba-st-training"},{"subj":"T12","pred":"source","obj":"jnlpba-st-training"},{"subj":"T13","pred":"source","obj":"jnlpba-st-training"},{"subj":"T14","pred":"source","obj":"jnlpba-st-training"},{"subj":"T15","pred":"source","obj":"jnlpba-st-training"},{"subj":"T16","pred":"source","obj":"jnlpba-st-training"},{"subj":"T17","pred":"source","obj":"jnlpba-st-training"},{"subj":"T18","pred":"source","obj":"jnlpba-st-training"},{"subj":"T19","pred":"source","obj":"jnlpba-st-training"},{"subj":"T20","pred":"source","obj":"jnlpba-st-training"},{"subj":"T21","pred":"source","obj":"jnlpba-st-training"},{"subj":"T22","pred":"source","obj":"jnlpba-st-training"},{"subj":"T23","pred":"source","obj":"jnlpba-st-training"},{"subj":"T24","pred":"source","obj":"jnlpba-st-training"},{"subj":"T25","pred":"source","obj":"jnlpba-st-training"},{"subj":"T26","pred":"source","obj":"jnlpba-st-training"},{"subj":"T27","pred":"source","obj":"jnlpba-st-training"},{"subj":"T28","pred":"source","obj":"jnlpba-st-training"},{"subj":"T29","pred":"source","obj":"jnlpba-st-training"},{"subj":"T30","pred":"source","obj":"jnlpba-st-training"},{"subj":"T31","pred":"source","obj":"jnlpba-st-training"},{"subj":"T32","pred":"source","obj":"jnlpba-st-training"},{"subj":"T33","pred":"source","obj":"jnlpba-st-training"},{"subj":"T34","pred":"source","obj":"jnlpba-st-training"}]},{"project":"pubmed-sentences-benchmark","denotations":[{"id":"S1","span":{"begin":0,"end":76},"obj":"Sentence"},{"id":"S2","span":{"begin":77,"end":174},"obj":"Sentence"},{"id":"S3","span":{"begin":175,"end":369},"obj":"Sentence"},{"id":"S4","span":{"begin":370,"end":486},"obj":"Sentence"},{"id":"S5","span":{"begin":487,"end":602},"obj":"Sentence"},{"id":"S6","span":{"begin":603,"end":808},"obj":"Sentence"},{"id":"S7","span":{"begin":809,"end":971},"obj":"Sentence"},{"id":"S8","span":{"begin":972,"end":1167},"obj":"Sentence"},{"id":"S9","span":{"begin":1168,"end":1281},"obj":"Sentence"},{"id":"S10","span":{"begin":1282,"end":1467},"obj":"Sentence"}],"attributes":[{"subj":"S1","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S2","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S3","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S4","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S5","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S6","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S7","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S8","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S9","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S10","pred":"source","obj":"pubmed-sentences-benchmark"}]},{"project":"GENIAcorpus","denotations":[{"id":"T1","span":{"begin":27,"end":36},"obj":"protein_complex"},{"id":"T2","span":{"begin":40,"end":75},"obj":"cell_type"},{"id":"T3","span":{"begin":77,"end":111},"obj":"virus"},{"id":"T4","span":{"begin":113,"end":119},"obj":"virus"},{"id":"T5","span":{"begin":146,"end":167},"obj":"other_name"},{"id":"T6","span":{"begin":169,"end":172},"obj":"other_name"},{"id":"T7","span":{"begin":179,"end":192},"obj":"protein_family_or_group"},{"id":"T8","span":{"begin":193,"end":196},"obj":"protein_molecule"},{"id":"T9","span":{"begin":253,"end":273},"obj":"protein_family_or_group"},{"id":"T10","span":{"begin":274,"end":283},"obj":"protein_complex"},{"id":"T11","span":{"begin":351,"end":358},"obj":"cell_type"},{"id":"T12","span":{"begin":362,"end":368},"obj":"virus"},{"id":"T13","span":{"begin":383,"end":389},"obj":"virus"},{"id":"T14","span":{"begin":406,"end":409},"obj":"protein_molecule"},{"id":"T15","span":{"begin":445,"end":467},"obj":"cell_type"},{"id":"T16","span":{"begin":473,"end":476},"obj":"other_name"},{"id":"T17","span":{"begin":477,"end":485},"obj":"multi_cell"},{"id":"T18","span":{"begin":528,"end":537},"obj":"protein_complex"},{"id":"T19","span":{"begin":552,"end":583},"obj":"cell_type"},{"id":"T20","span":{"begin":589,"end":592},"obj":"other_name"},{"id":"T21","span":{"begin":593,"end":601},"obj":"multi_cell"},{"id":"T22","span":{"begin":617,"end":631},"obj":"cell_type"},{"id":"T23","span":{"begin":637,"end":640},"obj":"other_name"},{"id":"T24","span":{"begin":641,"end":649},"obj":"multi_cell"},{"id":"T25","span":{"begin":656,"end":662},"obj":"virus"},{"id":"T26","span":{"begin":707,"end":716},"obj":"protein_complex"},{"id":"T27","span":{"begin":717,"end":737},"obj":"other_name"},{"id":"T28","span":{"begin":767,"end":779},"obj":"protein_molecule"},{"id":"T29","span":{"begin":797,"end":806},"obj":"protein_complex"},{"id":"T30","span":{"begin":821,"end":830},"obj":"protein_complex"},{"id":"T31","span":{"begin":851,"end":854},"obj":"protein_molecule"},{"id":"T32","span":{"begin":899,"end":908},"obj":"protein_complex"},{"id":"T33","span":{"begin":916,"end":919},"obj":"other_name"},{"id":"T34","span":{"begin":976,"end":987},"obj":"cell_line"},{"id":"T35","span":{"begin":1001,"end":1004},"obj":"other_name"},{"id":"T36","span":{"begin":1005,"end":1019},"obj":"cell_type"},{"id":"T37","span":{"begin":1039,"end":1051},"obj":"other_name"},{"id":"T38","span":{"begin":1052,"end":1061},"obj":"protein_complex"},{"id":"T39","span":{"begin":1107,"end":1119},"obj":"protein_molecule"},{"id":"T40","span":{"begin":1152,"end":1155},"obj":"protein_molecule"},{"id":"T41","span":{"begin":1187,"end":1196},"obj":"protein_complex"},{"id":"T42","span":{"begin":1219,"end":1226},"obj":"protein_complex"},{"id":"T43","span":{"begin":1231,"end":1238},"obj":"protein_complex"},{"id":"T44","span":{"begin":1258,"end":1265},"obj":"cell_type"},{"id":"T45","span":{"begin":1266,"end":1280},"obj":"cell_type"},{"id":"T46","span":{"begin":1321,"end":1330},"obj":"protein_complex"},{"id":"T47","span":{"begin":1348,"end":1351},"obj":"protein_molecule"},{"id":"T48","span":{"begin":1377,"end":1391},"obj":"cell_type"},{"id":"T49","span":{"begin":1395,"end":1398},"obj":"other_name"},{"id":"T50","span":{"begin":1399,"end":1407},"obj":"multi_cell"},{"id":"T51","span":{"begin":1438,"end":1447},"obj":"protein_complex"}],"attributes":[{"subj":"T1","pred":"source","obj":"GENIAcorpus"},{"subj":"T2","pred":"source","obj":"GENIAcorpus"},{"subj":"T3","pred":"source","obj":"GENIAcorpus"},{"subj":"T4","pred":"source","obj":"GENIAcorpus"},{"subj":"T5","pred":"source","obj":"GENIAcorpus"},{"subj":"T6","pred":"source","obj":"GENIAcorpus"},{"subj":"T7","pred":"source","obj":"GENIAcorpus"},{"subj":"T8","pred":"source","obj":"GENIAcorpus"},{"subj":"T9","pred":"source","obj":"GENIAcorpus"},{"subj":"T10","pred":"source","obj":"GENIAcorpus"},{"subj":"T11","pred":"source","obj":"GENIAcorpus"},{"subj":"T12","pred":"source","obj":"GENIAcorpus"},{"subj":"T13","pred":"source","obj":"GENIAcorpus"},{"subj":"T14","pred":"source","obj":"GENIAcorpus"},{"subj":"T15","pred":"source","obj":"GENIAcorpus"},{"subj":"T16","pred":"source","obj":"GENIAcorpus"},{"subj":"T17","pred":"source","obj":"GENIAcorpus"},{"subj":"T18","pred":"source","obj":"GENIAcorpus"},{"subj":"T19","pred":"source","obj":"GENIAcorpus"},{"subj":"T20","pred":"source","obj":"GENIAcorpus"},{"subj":"T21","pred":"source","obj":"GENIAcorpus"},{"subj":"T22","pred":"source","obj":"GENIAcorpus"},{"subj":"T23","pred":"source","obj":"GENIAcorpus"},{"subj":"T24","pred":"source","obj":"GENIAcorpus"},{"subj":"T25","pred":"source","obj":"GENIAcorpus"},{"subj":"T26","pred":"source","obj":"GENIAcorpus"},{"subj":"T27","pred":"source","obj":"GENIAcorpus"},{"subj":"T28","pred":"source","obj":"GENIAcorpus"},{"subj":"T29","pred":"source","obj":"GENIAcorpus"},{"subj":"T30","pred":"source","obj":"GENIAcorpus"},{"subj":"T31","pred":"source","obj":"GENIAcorpus"},{"subj":"T32","pred":"source","obj":"GENIAcorpus"},{"subj":"T33","pred":"source","obj":"GENIAcorpus"},{"subj":"T34","pred":"source","obj":"GENIAcorpus"},{"subj":"T35","pred":"source","obj":"GENIAcorpus"},{"subj":"T36","pred":"source","obj":"GENIAcorpus"},{"subj":"T37","pred":"source","obj":"GENIAcorpus"},{"subj":"T38","pred":"source","obj":"GENIAcorpus"},{"subj":"T39","pred":"source","obj":"GENIAcorpus"},{"subj":"T40","pred":"source","obj":"GENIAcorpus"},{"subj":"T41","pred":"source","obj":"GENIAcorpus"},{"subj":"T42","pred":"source","obj":"GENIAcorpus"},{"subj":"T43","pred":"source","obj":"GENIAcorpus"},{"subj":"T44","pred":"source","obj":"GENIAcorpus"},{"subj":"T45","pred":"source","obj":"GENIAcorpus"},{"subj":"T46","pred":"source","obj":"GENIAcorpus"},{"subj":"T47","pred":"source","obj":"GENIAcorpus"},{"subj":"T48","pred":"source","obj":"GENIAcorpus"},{"subj":"T49","pred":"source","obj":"GENIAcorpus"},{"subj":"T50","pred":"source","obj":"GENIAcorpus"},{"subj":"T51","pred":"source","obj":"GENIAcorpus"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"genia-medco-coref","color":"#93beec","default":true},{"id":"PubmedHPO","color":"#d8ec93"},{"id":"jnlpba-st-training","color":"#e693ec"},{"id":"pubmed-sentences-benchmark","color":"#93eccc"},{"id":"GENIAcorpus","color":"#ecb293"}]}]}}