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PubMed:10090947 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 27-36 protein denotes NF-kappaB
T2 40-75 cell_type denotes primary adult T-cell leukemia cells
T3 179-192 protein denotes viral protein
T4 193-196 protein denotes Tax
T5 253-273 protein denotes transcription factor
T6 274-283 protein denotes NF-kappaB
T7 351-358 cell_type denotes T cells
T8 383-395 DNA denotes HTLV-I genes
T9 406-409 protein denotes Tax
T10 445-467 cell_type denotes primary leukemic cells
T11 528-537 protein denotes NF-kappaB
T12 552-583 cell_type denotes freshly isolated leukemic cells
T13 617-631 cell_type denotes leukemic cells
T14 656-684 cell_line denotes HTLV-I-infected T-cell lines
T15 707-716 protein denotes NF-kappaB
T16 767-779 protein denotes IkappaBalpha
T17 797-806 protein denotes NF-kappaB
T18 821-830 protein denotes NF-kappaB
T19 851-878 cell_line denotes Tax-expressing T-cell lines
T20 899-908 protein denotes p50/c-Rel
T21 938-970 protein denotes p50/p50 and p50/p65 heterodimers
T22 976-987 cell_line denotes T-cell line
T23 1005-1019 cell_type denotes leukemic cells
T24 1052-1061 protein denotes NF-kappaB
T25 1107-1119 protein denotes IkappaBalpha
T26 1152-1155 protein denotes Tax
T27 1187-1196 protein denotes NF-kappaB
T28 1219-1226 protein denotes p50/p50
T29 1231-1238 protein denotes p50/p65
T30 1258-1280 cell_type denotes primary leukemic cells
T31 1321-1330 protein denotes NF-kappaB
T32 1348-1351 protein denotes Tax
T33 1377-1391 cell_type denotes leukemic cells
T34 1438-1447 protein denotes NF-kappaB

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-76 Sentence denotes Constitutive activation of NF-kappaB in primary adult T-cell leukemia cells.
S2 77-174 Sentence denotes Human T-cell leukemia virus type I (HTLV-I) is an etiologic agent of adult T-cell leukemia (ATL).
S3 175-369 Sentence denotes The viral protein Tax induces the activation and nuclear translocalization of transcription factor NF-kappaB, which is proposed to play a crucial role in the transformation of T cells by HTLV-I.
S4 370-486 Sentence denotes However, the HTLV-I genes including Tax are not expressed significantly in primary leukemic cells from ATL patients.
S5 487-602 Sentence denotes In this study, we examined the basis for NF-kappaB activation in freshly isolated leukemic cells from ATL patients.
S6 603-808 Sentence denotes We found that leukemic cells from ATL patients, like HTLV-I-infected T-cell lines, display constitutive NF-kappaB DNA binding activity and increased degradation of IkappaBalpha (an inhibitor of NF-kappaB).
S7 809-971 Sentence denotes Whereas the NF-kappaB binding activity in Tax-expressing T-cell lines consisted mostly of p50/c-Rel, fresh ATL samples contained p50/p50 and p50/p65 heterodimers.
S8 972-1167 Sentence denotes One T-cell line derived from ATL leukemic cells, TL-Om1, displayed constitutive NF-kappaB activity, as well as enhanced degradation of IkappaBalpha, despite the lack of detectable Tax expression.
S9 1168-1281 Sentence denotes Interestingly, the NF-kappaB in TL-Om1 consists of p50/p50 and p50/p65 like that in fresh primary leukemic cells.
S10 1282-1467 Sentence denotes Our results suggest that activation of NF-kappaB occurs through a Tax-independent mechanism in leukemic cells of ATL patients, possibly due to differential NF-kappaB subunit activation.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 27-36 NP denotes NF-kappaB
C2 77-120 NP denotes Human T-cell leukemia virus type I (HTLV-I)
C3 175-196 NP denotes The viral protein Tax
C5 253-283 NP denotes transcription factor NF-kappaB
C6 285-290 NP denotes which
C7 362-368 NP denotes HTLV-I
C4 253-368 NP denotes transcription factor NF-kappaB, which is proposed to play a crucial role in the transformation of T cells by HTLV-I
C8 406-409 NP denotes Tax
C9 473-485 NP denotes ATL patients
C10 589-601 NP denotes ATL patients
C11 637-649 NP denotes ATL patients
C13 767-807 NP denotes IkappaBalpha (an inhibitor of NF-kappaB)
C12 752-807 NP denotes degradation of IkappaBalpha (an inhibitor of NF-kappaB)
C14 938-970 NP denotes p50/p50 and p50/p65 heterodimers
C15 1001-1019 NP denotes ATL leukemic cells
C16 1021-1027 NP denotes TL-Om1
C18 1107-1119 NP denotes IkappaBalpha
C17 1092-1119 NP denotes degradation of IkappaBalpha
C19 1183-1196 NP denotes the NF-kappaB
C20 1200-1206 NP denotes TL-Om1
C21 1219-1238 NP denotes p50/p50 and p50/p65
C22 1244-1248 NP denotes that
C23 1321-1330 NP denotes NF-kappaB
C24 1395-1407 NP denotes ATL patients
R1 C6 C5 coref-relat which,transcription factor NF-kappaB
R2 C7 C2 coref-ident HTLV-I,Human T-cell leukemia virus type I (HTLV-I)
R3 C4 C1 coref-ident "transcription factor NF-kappaB, which is proposed to play a crucial role in the transformation of T cells by HTLV-I",NF-kappaB
R4 C8 C3 coref-ident Tax,The viral protein Tax
R5 C10 C9 coref-ident ATL patients,ATL patients
R6 C11 C10 coref-ident ATL patients,ATL patients
R7 C16 C15 coref-appos TL-Om1,ATL leukemic cells
R8 C18 C13 coref-ident IkappaBalpha,IkappaBalpha (an inhibitor of NF-kappaB)
R9 C17 C12 coref-ident degradation of IkappaBalpha,degradation of IkappaBalpha (an inhibitor of NF-kappaB)
R10 C20 C15 coref-ident TL-Om1,ATL leukemic cells
R11 C21 C14 coref-ident p50/p50 and p50/p65,p50/p50 and p50/p65 heterodimers
R12 C22 C19 coref-pron that,the NF-kappaB
R13 C23 C4 coref-ident NF-kappaB,"transcription factor NF-kappaB, which is proposed to play a crucial role in the transformation of T cells by HTLV-I"
R14 C24 C11 coref-ident ATL patients,ATL patients

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 27-36 protein_complex denotes NF-kappaB
T2 40-75 cell_type denotes primary adult T-cell leukemia cells
T3 77-111 virus denotes Human T-cell leukemia virus type I
T4 113-119 virus denotes HTLV-I
T5 146-167 other_name denotes adult T-cell leukemia
T6 169-172 other_name denotes ATL
T7 179-192 protein_family_or_group denotes viral protein
T8 193-196 protein_molecule denotes Tax
T9 253-273 protein_family_or_group denotes transcription factor
T10 274-283 protein_complex denotes NF-kappaB
T11 351-358 cell_type denotes T cells
T12 362-368 virus denotes HTLV-I
T13 383-389 virus denotes HTLV-I
T14 406-409 protein_molecule denotes Tax
T15 445-467 cell_type denotes primary leukemic cells
T16 473-476 other_name denotes ATL
T17 477-485 multi_cell denotes patients
T18 528-537 protein_complex denotes NF-kappaB
T19 552-583 cell_type denotes freshly isolated leukemic cells
T20 589-592 other_name denotes ATL
T21 593-601 multi_cell denotes patients
T22 617-631 cell_type denotes leukemic cells
T23 637-640 other_name denotes ATL
T24 641-649 multi_cell denotes patients
T25 656-662 virus denotes HTLV-I
T26 707-716 protein_complex denotes NF-kappaB
T27 717-737 other_name denotes DNA binding activity
T28 767-779 protein_molecule denotes IkappaBalpha
T29 797-806 protein_complex denotes NF-kappaB
T30 821-830 protein_complex denotes NF-kappaB
T31 851-854 protein_molecule denotes Tax
T32 899-908 protein_complex denotes p50/c-Rel
T33 916-919 other_name denotes ATL
T34 976-987 cell_line denotes T-cell line
T35 1001-1004 other_name denotes ATL
T36 1005-1019 cell_type denotes leukemic cells
T37 1039-1051 other_name denotes constitutive
T38 1052-1061 protein_complex denotes NF-kappaB
T39 1107-1119 protein_molecule denotes IkappaBalpha
T40 1152-1155 protein_molecule denotes Tax
T41 1187-1196 protein_complex denotes NF-kappaB
T42 1219-1226 protein_complex denotes p50/p50
T43 1231-1238 protein_complex denotes p50/p65
T44 1258-1265 cell_type denotes primary
T45 1266-1280 cell_type denotes leukemic cells
T46 1321-1330 protein_complex denotes NF-kappaB
T47 1348-1351 protein_molecule denotes Tax
T48 1377-1391 cell_type denotes leukemic cells
T49 1395-1398 other_name denotes ATL
T50 1399-1407 multi_cell denotes patients
T51 1438-1447 protein_complex denotes NF-kappaB

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 90-98 HP_0001909 denotes leukemia
T2 159-167 HP_0001909 denotes leukemia