PubMed:10023774
Annnotations
jnlpba-st-training
{"project":"jnlpba-st-training","denotations":[{"id":"T1","span":{"begin":0,"end":7},"obj":"protein"},{"id":"T2","span":{"begin":15,"end":47},"obj":"protein"},{"id":"T3","span":{"begin":63,"end":74},"obj":"DNA"},{"id":"T4","span":{"begin":89,"end":102},"obj":"cell_type"},{"id":"T5","span":{"begin":104,"end":110},"obj":"protein"},{"id":"T6","span":{"begin":112,"end":175},"obj":"protein"},{"id":"T7","span":{"begin":182,"end":206},"obj":"protein"},{"id":"T8","span":{"begin":208,"end":217},"obj":"protein"},{"id":"T9","span":{"begin":318,"end":330},"obj":"cell_type"},{"id":"T10","span":{"begin":332,"end":338},"obj":"protein"},{"id":"T11","span":{"begin":388,"end":401},"obj":"cell_type"},{"id":"T12","span":{"begin":460,"end":504},"obj":"protein"},{"id":"T13","span":{"begin":519,"end":566},"obj":"protein"},{"id":"T14","span":{"begin":569,"end":576},"obj":"protein"},{"id":"T15","span":{"begin":579,"end":586},"obj":"protein"},{"id":"T16","span":{"begin":615,"end":647},"obj":"protein"},{"id":"T17","span":{"begin":669,"end":676},"obj":"cell_type"},{"id":"T18","span":{"begin":718,"end":724},"obj":"protein"},{"id":"T19","span":{"begin":743,"end":755},"obj":"protein"},{"id":"T20","span":{"begin":782,"end":793},"obj":"DNA"},{"id":"T21","span":{"begin":821,"end":828},"obj":"protein"},{"id":"T22","span":{"begin":860,"end":866},"obj":"protein"},{"id":"T23","span":{"begin":870,"end":877},"obj":"cell_type"}],"text":"RFLAT-1: a new zinc finger transcription factor that activates RANTES gene expression in T lymphocytes.\nRANTES (Regulated upon Activation, Normal T cell Expressed and Secreted) is a chemoattractant cytokine (chemokine) important in the generation of inflammatory infiltrate and human immunodeficiency virus entry into immune cells. RANTES is expressed late (3-5 days) after activation in T lymphocytes. Using expression cloning, we identified the first \"late\" T lymphocyte associated transcription factor and named it \"RANTES Factor of Late Activated T Lymphocytes-1\" (RFLAT-1). RFLAT-1 is a novel, phosphorylated, zinc finger transcription factor that is expressed in T cells 3 days after activation, coincident with RANTES expression. While Rel proteins play the dominant role in RANTES gene expression in fibroblasts, RFLAT-1 is a strong transactivator for RANTES in T cells."}
genia-medco-coref
{"project":"genia-medco-coref","denotations":[{"id":"C1","span":{"begin":0,"end":7},"obj":"NP"},{"id":"C3","span":{"begin":9,"end":47},"obj":"NP"},{"id":"C4","span":{"begin":48,"end":52},"obj":"NP"},{"id":"C5","span":{"begin":89,"end":102},"obj":"NP"},{"id":"C2","span":{"begin":9,"end":102},"obj":"NP"},{"id":"C6","span":{"begin":104,"end":176},"obj":"NP"},{"id":"C7","span":{"begin":332,"end":338},"obj":"NP"},{"id":"C8","span":{"begin":388,"end":401},"obj":"NP"},{"id":"C9","span":{"begin":443,"end":504},"obj":"NP"},{"id":"C10","span":{"begin":515,"end":517},"obj":"NP"},{"id":"C11","span":{"begin":518,"end":577},"obj":"NP"},{"id":"C12","span":{"begin":579,"end":586},"obj":"NP"},{"id":"C13","span":{"begin":590,"end":647},"obj":"NP"},{"id":"C14","span":{"begin":648,"end":652},"obj":"NP"},{"id":"C15","span":{"begin":669,"end":676},"obj":"NP"},{"id":"C16","span":{"begin":821,"end":828},"obj":"NP"},{"id":"C17","span":{"begin":860,"end":866},"obj":"NP"},{"id":"C18","span":{"begin":870,"end":877},"obj":"NP"}],"relations":[{"id":"R1","pred":"coref-relat","subj":"C4","obj":"C3"},{"id":"R2","pred":"coref-appos","subj":"C2","obj":"C1"},{"id":"R3","pred":"coref-ident","subj":"C7","obj":"C6"},{"id":"R4","pred":"coref-ident","subj":"C8","obj":"C5"},{"id":"R5","pred":"coref-pron","subj":"C10","obj":"C9"},{"id":"R6","pred":"coref-ident","subj":"C11","obj":"C1"},{"id":"R7","pred":"coref-ident","subj":"C12","obj":"C11"},{"id":"R8","pred":"coref-relat","subj":"C14","obj":"C13"},{"id":"R9","pred":"coref-ident","subj":"C15","obj":"C8"},{"id":"R10","pred":"coref-ident","subj":"C16","obj":"C12"},{"id":"R11","pred":"coref-ident","subj":"C17","obj":"C7"},{"id":"R12","pred":"coref-ident","subj":"C18","obj":"C15"}],"text":"RFLAT-1: a new zinc finger transcription factor that activates RANTES gene expression in T lymphocytes.\nRANTES (Regulated upon Activation, Normal T cell Expressed and Secreted) is a chemoattractant cytokine (chemokine) important in the generation of inflammatory infiltrate and human immunodeficiency virus entry into immune cells. RANTES is expressed late (3-5 days) after activation in T lymphocytes. Using expression cloning, we identified the first \"late\" T lymphocyte associated transcription factor and named it \"RANTES Factor of Late Activated T Lymphocytes-1\" (RFLAT-1). RFLAT-1 is a novel, phosphorylated, zinc finger transcription factor that is expressed in T cells 3 days after activation, coincident with RANTES expression. While Rel proteins play the dominant role in RANTES gene expression in fibroblasts, RFLAT-1 is a strong transactivator for RANTES in T cells."}
pubmed-sentences-benchmark
{"project":"pubmed-sentences-benchmark","denotations":[{"id":"S1","span":{"begin":0,"end":103},"obj":"Sentence"},{"id":"S2","span":{"begin":104,"end":331},"obj":"Sentence"},{"id":"S3","span":{"begin":332,"end":402},"obj":"Sentence"},{"id":"S4","span":{"begin":403,"end":578},"obj":"Sentence"},{"id":"S5","span":{"begin":579,"end":736},"obj":"Sentence"},{"id":"S6","span":{"begin":737,"end":878},"obj":"Sentence"}],"text":"RFLAT-1: a new zinc finger transcription factor that activates RANTES gene expression in T lymphocytes.\nRANTES (Regulated upon Activation, Normal T cell Expressed and Secreted) is a chemoattractant cytokine (chemokine) important in the generation of inflammatory infiltrate and human immunodeficiency virus entry into immune cells. RANTES is expressed late (3-5 days) after activation in T lymphocytes. Using expression cloning, we identified the first \"late\" T lymphocyte associated transcription factor and named it \"RANTES Factor of Late Activated T Lymphocytes-1\" (RFLAT-1). RFLAT-1 is a novel, phosphorylated, zinc finger transcription factor that is expressed in T cells 3 days after activation, coincident with RANTES expression. While Rel proteins play the dominant role in RANTES gene expression in fibroblasts, RFLAT-1 is a strong transactivator for RANTES in T cells."}
GENIAcorpus
{"project":"GENIAcorpus","denotations":[{"id":"T1","span":{"begin":0,"end":7},"obj":"protein_molecule"},{"id":"T2","span":{"begin":15,"end":47},"obj":"protein_family_or_group"},{"id":"T3","span":{"begin":63,"end":69},"obj":"protein_molecule"},{"id":"T4","span":{"begin":89,"end":102},"obj":"cell_type"},{"id":"T5","span":{"begin":104,"end":110},"obj":"protein_molecule"},{"id":"T6","span":{"begin":112,"end":175},"obj":"protein_molecule"},{"id":"T7","span":{"begin":182,"end":206},"obj":"protein_family_or_group"},{"id":"T8","span":{"begin":208,"end":217},"obj":"protein_family_or_group"},{"id":"T9","span":{"begin":250,"end":273},"obj":"other_name"},{"id":"T10","span":{"begin":278,"end":312},"obj":"other_name"},{"id":"T11","span":{"begin":318,"end":330},"obj":"cell_type"},{"id":"T12","span":{"begin":332,"end":338},"obj":"protein_molecule"},{"id":"T13","span":{"begin":388,"end":401},"obj":"cell_type"},{"id":"T14","span":{"begin":460,"end":504},"obj":"protein_family_or_group"},{"id":"T15","span":{"begin":519,"end":525},"obj":"protein_molecule"},{"id":"T16","span":{"begin":569,"end":576},"obj":"protein_molecule"},{"id":"T17","span":{"begin":579,"end":586},"obj":"protein_molecule"},{"id":"T18","span":{"begin":615,"end":647},"obj":"protein_family_or_group"},{"id":"T19","span":{"begin":669,"end":676},"obj":"cell_type"},{"id":"T20","span":{"begin":718,"end":724},"obj":"protein_molecule"},{"id":"T21","span":{"begin":743,"end":755},"obj":"protein_family_or_group"},{"id":"T22","span":{"begin":782,"end":788},"obj":"protein_molecule"},{"id":"T23","span":{"begin":821,"end":828},"obj":"protein_molecule"},{"id":"T24","span":{"begin":860,"end":866},"obj":"protein_molecule"},{"id":"T25","span":{"begin":870,"end":877},"obj":"cell_type"}],"text":"RFLAT-1: a new zinc finger transcription factor that activates RANTES gene expression in T lymphocytes.\nRANTES (Regulated upon Activation, Normal T cell Expressed and Secreted) is a chemoattractant cytokine (chemokine) important in the generation of inflammatory infiltrate and human immunodeficiency virus entry into immune cells. RANTES is expressed late (3-5 days) after activation in T lymphocytes. Using expression cloning, we identified the first \"late\" T lymphocyte associated transcription factor and named it \"RANTES Factor of Late Activated T Lymphocytes-1\" (RFLAT-1). RFLAT-1 is a novel, phosphorylated, zinc finger transcription factor that is expressed in T cells 3 days after activation, coincident with RANTES expression. While Rel proteins play the dominant role in RANTES gene expression in fibroblasts, RFLAT-1 is a strong transactivator for RANTES in T cells."}
bionlp-st-gro-2013-development
{"project":"bionlp-st-gro-2013-development","denotations":[{"id":"T1","span":{"begin":0,"end":7},"obj":"TranscriptionFactor"},{"id":"T5","span":{"begin":63,"end":69},"obj":"Protein"},{"id":"T7","span":{"begin":89,"end":102},"obj":"Cell"},{"id":"T8","span":{"begin":104,"end":110},"obj":"Protein"},{"id":"T11","span":{"begin":139,"end":152},"obj":"Cell"},{"id":"T14","span":{"begin":208,"end":217},"obj":"Protein"},{"id":"T15","span":{"begin":278,"end":306},"obj":"Virus"},{"id":"T16","span":{"begin":318,"end":330},"obj":"Cell"},{"id":"T17","span":{"begin":332,"end":338},"obj":"Protein"},{"id":"T20","span":{"begin":388,"end":401},"obj":"Cell"},{"id":"T21","span":{"begin":460,"end":472},"obj":"Cell"},{"id":"T22","span":{"begin":484,"end":504},"obj":"TranslationFactor"},{"id":"T23","span":{"begin":519,"end":566},"obj":"TranscriptionFactor"},{"id":"T24","span":{"begin":569,"end":576},"obj":"TranscriptionFactor"},{"id":"T25","span":{"begin":579,"end":586},"obj":"TranscriptionFactor"},{"id":"T30","span":{"begin":669,"end":676},"obj":"Cell"},{"id":"T32","span":{"begin":718,"end":724},"obj":"TranscriptionFactor"},{"id":"T34","span":{"begin":743,"end":755},"obj":"TranscriptionFactor"},{"id":"T35","span":{"begin":782,"end":788},"obj":"Protein"},{"id":"T37","span":{"begin":808,"end":819},"obj":"Cell"},{"id":"T38","span":{"begin":821,"end":828},"obj":"TranscriptionFactor"},{"id":"T40","span":{"begin":860,"end":866},"obj":"Protein"},{"id":"T41","span":{"begin":870,"end":877},"obj":"Cell"},{"id":"T2","span":{"begin":15,"end":47},"obj":"ZincCoordinatingDomainTF"},{"id":"T42","span":{"begin":198,"end":206},"obj":"Protein"},{"id":"T27","span":{"begin":615,"end":647},"obj":"ZincCoordinatingDomainTF"},{"id":"T28","span":{"begin":841,"end":855},"obj":"TranscriptionActivatorActivity"},{"id":"E1","span":{"begin":53,"end":62},"obj":"PositiveRegulation"},{"id":"E2","span":{"begin":70,"end":85},"obj":"GeneExpression"},{"id":"E3","span":{"begin":112,"end":121},"obj":"RegulatoryProcess"},{"id":"E4","span":{"begin":127,"end":137},"obj":"PositiveRegulation"},{"id":"E5","span":{"begin":153,"end":162},"obj":"GeneExpression"},{"id":"E6","span":{"begin":342,"end":351},"obj":"GeneExpression"},{"id":"E7","span":{"begin":374,"end":384},"obj":"PositiveRegulation"},{"id":"E8","span":{"begin":599,"end":613},"obj":"Phosphorylation"},{"id":"E9","span":{"begin":656,"end":665},"obj":"GeneExpression"},{"id":"E10","span":{"begin":690,"end":700},"obj":"PositiveRegulation"},{"id":"E11","span":{"begin":725,"end":735},"obj":"GeneExpression"},{"id":"E12","span":{"begin":789,"end":804},"obj":"GeneExpression"},{"id":"E14","span":{"begin":167,"end":175},"obj":"Transport"},{"id":"E15","span":{"begin":182,"end":197},"obj":"ResponseToChemicalStimulus"}],"relations":[{"id":"R2","pred":"locatedIn","subj":"E2","obj":"T7"},{"id":"R3","pred":"locatedIn","subj":"E5","obj":"T11"},{"id":"R4","pred":"locatedIn","subj":"E7","obj":"T20"},{"id":"R5","pred":"precedes","subj":"E7","obj":"E6"},{"id":"R7","pred":"locatedIn","subj":"E9","obj":"T30"},{"id":"R8","pred":"precedes","subj":"E10","obj":"E9"},{"id":"R9","pred":"locatedIn","subj":"E12","obj":"T37"},{"id":"R1","pred":"locatedIn","subj":"T40","obj":"T41"},{"id":"R10","pred":"hasFunction","subj":"T38","obj":"T28"},{"id":"R12","pred":"hasAgent","subj":"T1","obj":"E1"},{"id":"R13","pred":"hasPatient","subj":"E2","obj":"E1"},{"id":"R14","pred":"hasPatient","subj":"T5","obj":"E2"},{"id":"R15","pred":"hasAgent","subj":"E4","obj":"E3"},{"id":"R16","pred":"hasPatient","subj":"T8","obj":"E3"},{"id":"R17","pred":"hasPatient","subj":"T8","obj":"E5"},{"id":"R18","pred":"hasPatient","subj":"T17","obj":"E6"},{"id":"R19","pred":"hasPatient","subj":"T25","obj":"E8"},{"id":"R20","pred":"hasPatient","subj":"T25","obj":"E9"},{"id":"R21","pred":"hasPatient","subj":"T32","obj":"E11"},{"id":"R22","pred":"hasAgent","subj":"T34","obj":"E12"},{"id":"R23","pred":"hasPatient","subj":"T35","obj":"E12"},{"id":"R24","pred":"hasPatient","subj":"T8","obj":"E14"}],"text":"RFLAT-1: a new zinc finger transcription factor that activates RANTES gene expression in T lymphocytes.\nRANTES (Regulated upon Activation, Normal T cell Expressed and Secreted) is a chemoattractant cytokine (chemokine) important in the generation of inflammatory infiltrate and human immunodeficiency virus entry into immune cells. RANTES is expressed late (3-5 days) after activation in T lymphocytes. Using expression cloning, we identified the first \"late\" T lymphocyte associated transcription factor and named it \"RANTES Factor of Late Activated T Lymphocytes-1\" (RFLAT-1). RFLAT-1 is a novel, phosphorylated, zinc finger transcription factor that is expressed in T cells 3 days after activation, coincident with RANTES expression. While Rel proteins play the dominant role in RANTES gene expression in fibroblasts, RFLAT-1 is a strong transactivator for RANTES in T cells."}
PubmedHPO
{"project":"PubmedHPO","denotations":[{"id":"T1","span":{"begin":284,"end":300},"obj":"HP_0002721"}],"text":"RFLAT-1: a new zinc finger transcription factor that activates RANTES gene expression in T lymphocytes.\nRANTES (Regulated upon Activation, Normal T cell Expressed and Secreted) is a chemoattractant cytokine (chemokine) important in the generation of inflammatory infiltrate and human immunodeficiency virus entry into immune cells. RANTES is expressed late (3-5 days) after activation in T lymphocytes. Using expression cloning, we identified the first \"late\" T lymphocyte associated transcription factor and named it \"RANTES Factor of Late Activated T Lymphocytes-1\" (RFLAT-1). RFLAT-1 is a novel, phosphorylated, zinc finger transcription factor that is expressed in T cells 3 days after activation, coincident with RANTES expression. While Rel proteins play the dominant role in RANTES gene expression in fibroblasts, RFLAT-1 is a strong transactivator for RANTES in T cells."}