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PubMed:10023774 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-7 protein denotes RFLAT-1
T2 15-47 protein denotes zinc finger transcription factor
T3 63-74 DNA denotes RANTES gene
T4 89-102 cell_type denotes T lymphocytes
T5 104-110 protein denotes RANTES
T6 112-175 protein denotes Regulated upon Activation, Normal T cell Expressed and Secreted
T7 182-206 protein denotes chemoattractant cytokine
T8 208-217 protein denotes chemokine
T9 318-330 cell_type denotes immune cells
T10 332-338 protein denotes RANTES
T11 388-401 cell_type denotes T lymphocytes
T12 460-504 protein denotes T lymphocyte associated transcription factor
T13 519-566 protein denotes RANTES Factor of Late Activated T Lymphocytes-1
T14 569-576 protein denotes RFLAT-1
T15 579-586 protein denotes RFLAT-1
T16 615-647 protein denotes zinc finger transcription factor
T17 669-676 cell_type denotes T cells
T18 718-724 protein denotes RANTES
T19 743-755 protein denotes Rel proteins
T20 782-793 DNA denotes RANTES gene
T21 821-828 protein denotes RFLAT-1
T22 860-866 protein denotes RANTES
T23 870-877 cell_type denotes T cells

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 0-7 NP denotes RFLAT-1
C3 9-47 NP denotes a new zinc finger transcription factor
C4 48-52 NP denotes that
C5 89-102 NP denotes T lymphocytes
C2 9-102 NP denotes a new zinc finger transcription factor that activates RANTES gene expression in T lymphocytes
C6 104-176 NP denotes RANTES (Regulated upon Activation, Normal T cell Expressed and Secreted)
C7 332-338 NP denotes RANTES
C8 388-401 NP denotes T lymphocytes
C9 443-504 NP denotes the first "late" T lymphocyte associated transcription factor
C10 515-517 NP denotes it
C11 518-577 NP denotes "RANTES Factor of Late Activated T Lymphocytes-1" (RFLAT-1)
C12 579-586 NP denotes RFLAT-1
C13 590-647 NP denotes a novel, phosphorylated, zinc finger transcription factor
C14 648-652 NP denotes that
C15 669-676 NP denotes T cells
C16 821-828 NP denotes RFLAT-1
C17 860-866 NP denotes RANTES
C18 870-877 NP denotes T cells
R1 C4 C3 coref-relat that,a new zinc finger transcription factor
R2 C2 C1 coref-appos a new zinc finger transcription factor that activates RANTES gene expression in T lymphocytes,RFLAT-1
R3 C7 C6 coref-ident RANTES,"RANTES (Regulated upon Activation, Normal T cell Expressed and Secreted)"
R4 C8 C5 coref-ident T lymphocytes,T lymphocytes
R5 C10 C9 coref-pron it,"the first ""late"" T lymphocyte associated transcription factor"
R6 C11 C1 coref-ident """RANTES Factor of Late Activated T Lymphocytes-1"" (RFLAT-1)",RFLAT-1
R7 C12 C11 coref-ident RFLAT-1,"""RANTES Factor of Late Activated T Lymphocytes-1"" (RFLAT-1)"
R8 C14 C13 coref-relat that,"a novel, phosphorylated, zinc finger transcription factor"
R9 C15 C8 coref-ident T cells,T lymphocytes
R10 C16 C12 coref-ident RFLAT-1,RFLAT-1
R11 C17 C7 coref-ident RANTES,RANTES
R12 C18 C15 coref-ident T cells,T cells

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-103 Sentence denotes RFLAT-1: a new zinc finger transcription factor that activates RANTES gene expression in T lymphocytes.
S2 104-331 Sentence denotes RANTES (Regulated upon Activation, Normal T cell Expressed and Secreted) is a chemoattractant cytokine (chemokine) important in the generation of inflammatory infiltrate and human immunodeficiency virus entry into immune cells.
S3 332-402 Sentence denotes RANTES is expressed late (3-5 days) after activation in T lymphocytes.
S4 403-578 Sentence denotes Using expression cloning, we identified the first "late" T lymphocyte associated transcription factor and named it "RANTES Factor of Late Activated T Lymphocytes-1" (RFLAT-1).
S5 579-736 Sentence denotes RFLAT-1 is a novel, phosphorylated, zinc finger transcription factor that is expressed in T cells 3 days after activation, coincident with RANTES expression.
S6 737-878 Sentence denotes While Rel proteins play the dominant role in RANTES gene expression in fibroblasts, RFLAT-1 is a strong transactivator for RANTES in T cells.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-7 protein_molecule denotes RFLAT-1
T2 15-47 protein_family_or_group denotes zinc finger transcription factor
T3 63-69 protein_molecule denotes RANTES
T4 89-102 cell_type denotes T lymphocytes
T5 104-110 protein_molecule denotes RANTES
T6 112-175 protein_molecule denotes Regulated upon Activation, Normal T cell Expressed and Secreted
T7 182-206 protein_family_or_group denotes chemoattractant cytokine
T8 208-217 protein_family_or_group denotes chemokine
T9 250-273 other_name denotes inflammatory infiltrate
T10 278-312 other_name denotes human immunodeficiency virus entry
T11 318-330 cell_type denotes immune cells
T12 332-338 protein_molecule denotes RANTES
T13 388-401 cell_type denotes T lymphocytes
T14 460-504 protein_family_or_group denotes T lymphocyte associated transcription factor
T15 519-525 protein_molecule denotes RANTES
T16 569-576 protein_molecule denotes RFLAT-1
T17 579-586 protein_molecule denotes RFLAT-1
T18 615-647 protein_family_or_group denotes zinc finger transcription factor
T19 669-676 cell_type denotes T cells
T20 718-724 protein_molecule denotes RANTES
T21 743-755 protein_family_or_group denotes Rel proteins
T22 782-788 protein_molecule denotes RANTES
T23 821-828 protein_molecule denotes RFLAT-1
T24 860-866 protein_molecule denotes RANTES
T25 870-877 cell_type denotes T cells

bionlp-st-gro-2013-development

Id Subject Object Predicate Lexical cue
T1 0-7 TranscriptionFactor denotes RFLAT-1
T5 63-69 Protein denotes RANTES
T7 89-102 Cell denotes T lymphocytes
T8 104-110 Protein denotes RANTES
T11 139-152 Cell denotes Normal T cell
T14 208-217 Protein denotes chemokine
T15 278-306 Virus denotes human immunodeficiency virus
T16 318-330 Cell denotes immune cells
T17 332-338 Protein denotes RANTES
T20 388-401 Cell denotes T lymphocytes
T21 460-472 Cell denotes T lymphocyte
T22 484-504 TranslationFactor denotes transcription factor
T23 519-566 TranscriptionFactor denotes RANTES Factor of Late Activated T Lymphocytes-1
T24 569-576 TranscriptionFactor denotes RFLAT-1
T25 579-586 TranscriptionFactor denotes RFLAT-1
T30 669-676 Cell denotes T cells
T32 718-724 TranscriptionFactor denotes RANTES
T34 743-755 TranscriptionFactor denotes Rel proteins
T35 782-788 Protein denotes RANTES
T37 808-819 Cell denotes fibroblasts
T38 821-828 TranscriptionFactor denotes RFLAT-1
T40 860-866 Protein denotes RANTES
T41 870-877 Cell denotes T cells
T2 15-47 ZincCoordinatingDomainTF denotes zinc finger transcription factor
T42 198-206 Protein denotes cytokine
T27 615-647 ZincCoordinatingDomainTF denotes zinc finger transcription factor
T28 841-855 TranscriptionActivatorActivity denotes transactivator
E1 53-62 PositiveRegulation denotes activates
E2 70-85 GeneExpression denotes gene expression
E3 112-121 RegulatoryProcess denotes Regulated
E4 127-137 PositiveRegulation denotes Activation
E5 153-162 GeneExpression denotes Expressed
E6 342-351 GeneExpression denotes expressed
E7 374-384 PositiveRegulation denotes activation
E8 599-613 Phosphorylation denotes phosphorylated
E9 656-665 GeneExpression denotes expressed
E10 690-700 PositiveRegulation denotes activation
E11 725-735 GeneExpression denotes expression
E12 789-804 GeneExpression denotes gene expression
E14 167-175 Transport denotes Secreted
E15 182-197 ResponseToChemicalStimulus denotes chemoattractant
R2 E2 T7 locatedIn gene expression,T lymphocytes
R3 E5 T11 locatedIn Expressed,Normal T cell
R4 E7 T20 locatedIn activation,T lymphocytes
R5 E7 E6 precedes activation,expressed
R7 E9 T30 locatedIn expressed,T cells
R8 E10 E9 precedes activation,expressed
R9 E12 T37 locatedIn gene expression,fibroblasts
R1 T40 T41 locatedIn RANTES,T cells
R10 T38 T28 hasFunction RFLAT-1,transactivator
R12 T1 E1 hasAgent RFLAT-1,activates
R13 E2 E1 hasPatient gene expression,activates
R14 T5 E2 hasPatient RANTES,gene expression
R15 E4 E3 hasAgent Activation,Regulated
R16 T8 E3 hasPatient RANTES,Regulated
R17 T8 E5 hasPatient RANTES,Expressed
R18 T17 E6 hasPatient RANTES,expressed
R19 T25 E8 hasPatient RFLAT-1,phosphorylated
R20 T25 E9 hasPatient RFLAT-1,expressed
R21 T32 E11 hasPatient RANTES,expression
R22 T34 E12 hasAgent Rel proteins,gene expression
R23 T35 E12 hasPatient RANTES,gene expression
R24 T8 E14 hasPatient RANTES,Secreted

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 284-300 HP_0002721 denotes immunodeficiency