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Oryza-OGER

Id Subject Object Predicate Lexical cue
T1 0-4 http://purl.obolibrary.org/obo/SO_0001743 denotes Loss
T2 34-38 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T3 34-38 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T4 34-38 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T5 48-52 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T6 53-58 OSH15 denotes OSH15
T7 110-115 D57 denotes dwarf
T8 110-115 BRD1 denotes dwarf
T9 116-122 http://id.nlm.nih.gov/mesh/D010944 denotes plants
T10 128-132 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T11 128-132 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T12 128-132 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T13 142-146 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T14 147-152 OSH15 denotes OSH15
T15 154-159 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza
T16 154-166 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes Oryza sativa
T17 154-166 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza sativa
T18 219-223 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T19 269-272 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T20 269-272 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T21 295-299 http://purl.obolibrary.org/obo/SO_0001743 denotes loss
T22 312-320 http://purl.obolibrary.org/obo/SO_0000109 denotes mutation
T23 324-329 OSH15 denotes OSH15
T24 348-363 KARMA denotes retrotransposon
T25 348-363 http://id.nlm.nih.gov/mesh/D018626 denotes retrotransposon
T26 348-363 http://purl.obolibrary.org/obo/SO_0000180 denotes retrotransposon
T27 380-384 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T28 380-384 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T29 380-384 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T30 409-412 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T31 409-412 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T32 413-416 http://purl.obolibrary.org/obo/PR_P9WK19 denotes map
T33 413-416 http://www.uniprot.org/uniprot/P56218 denotes map
T34 413-416 http://www.uniprot.org/uniprot/O52353 denotes map
T35 413-416 http://purl.obolibrary.org/obo/CHEBI_145457 denotes map
T36 413-416 http://www.uniprot.org/uniprot/O84859 denotes map
T37 413-416 http://www.uniprot.org/uniprot/P95963 denotes map
T38 413-416 http://www.uniprot.org/uniprot/Q9PL68 denotes map
T39 413-416 http://www.uniprot.org/uniprot/P0A1X7 denotes map
T40 413-416 http://www.uniprot.org/uniprot/Q59509 denotes map
T41 413-416 http://www.uniprot.org/uniprot/P0A1X6 denotes map
T42 413-416 http://purl.obolibrary.org/obo/PR_000014806 denotes map
T43 413-416 http://purl.obolibrary.org/obo/GO_0004239 denotes map
T44 413-416 http://www.uniprot.org/uniprot/B6YTG0 denotes map
T45 413-416 http://www.uniprot.org/uniprot/O83814 denotes map
T46 413-416 http://www.uniprot.org/uniprot/P50614 denotes map
T47 413-416 http://www.uniprot.org/uniprot/Q5HN46 denotes map
T48 413-416 http://www.uniprot.org/uniprot/O51132 denotes map
T49 413-416 http://www.uniprot.org/uniprot/P99121 denotes map
T50 413-416 http://www.uniprot.org/uniprot/P0A5J3 denotes map
T51 413-416 http://www.uniprot.org/uniprot/Q58725 denotes map
T52 413-416 http://www.uniprot.org/uniprot/Q11132 denotes map
T53 413-416 http://purl.obolibrary.org/obo/PR_000029173 denotes map
T54 413-416 http://www.uniprot.org/uniprot/P22624 denotes map
T55 413-416 http://www.uniprot.org/uniprot/Q8K9T1 denotes map
T56 413-416 http://www.uniprot.org/uniprot/P47418 denotes map
T57 413-416 http://www.uniprot.org/uniprot/Q89AP3 denotes map
T58 413-416 http://www.uniprot.org/uniprot/P79263 denotes map
T59 413-416 http://www.uniprot.org/uniprot/Q9UYT4 denotes map
T60 413-416 http://www.uniprot.org/uniprot/Q9ZCD3 denotes map
T61 413-416 http://www.uniprot.org/uniprot/Q9ZJT0 denotes map
T62 413-416 http://www.uniprot.org/uniprot/P41392 denotes map
T63 413-416 http://www.uniprot.org/uniprot/P0AE21 denotes map
T64 413-416 http://www.uniprot.org/uniprot/Q5HEN6 denotes map
T65 413-416 http://www.uniprot.org/uniprot/P0AE19 denotes map
T66 413-416 http://purl.obolibrary.org/obo/PR_P0A078 denotes map
T67 413-416 http://www.uniprot.org/uniprot/O28438 denotes map
T68 413-416 http://www.uniprot.org/uniprot/Q8CRU9 denotes map
T69 413-416 http://www.uniprot.org/uniprot/P57324 denotes map
T70 413-416 http://www.uniprot.org/uniprot/P0AE18 denotes map
T71 413-416 http://www.uniprot.org/uniprot/P44421 denotes map
T72 413-416 http://purl.obolibrary.org/obo/PR_P19994 denotes map
T73 413-416 http://purl.obolibrary.org/obo/PR_000023165 denotes map
T74 413-416 http://purl.obolibrary.org/obo/PR_Q96HU1 denotes map
T75 413-416 http://www.uniprot.org/uniprot/O66489 denotes map
T76 413-416 http://www.uniprot.org/uniprot/P0A078 denotes map
T77 413-416 http://purl.obolibrary.org/obo/PR_P0AE18 denotes map
T78 413-416 http://www.uniprot.org/uniprot/P0A080 denotes map
T79 413-416 http://www.uniprot.org/uniprot/P69000 denotes map
T80 413-416 http://www.uniprot.org/uniprot/Q5JGD1 denotes map
T81 413-416 http://www.uniprot.org/uniprot/O58362 denotes map
T82 413-416 http://www.uniprot.org/uniprot/P0AE20 denotes map
T83 413-416 http://www.uniprot.org/uniprot/P56102 denotes map
T84 413-416 http://www.uniprot.org/uniprot/Q9Z6Q0 denotes map
T85 413-416 http://www.uniprot.org/uniprot/P0A079 denotes map
T86 413-416 http://www.uniprot.org/uniprot/O27355 denotes map
T87 413-416 http://www.uniprot.org/uniprot/P28617 denotes map
T88 413-416 http://www.uniprot.org/uniprot/Q6GFG9 denotes map
T89 413-416 http://www.uniprot.org/uniprot/Q6G846 denotes map
T90 413-416 http://www.uniprot.org/uniprot/Q9Z9J4 denotes map
T91 464-472 http://purl.obolibrary.org/obo/SO_0000159 denotes deletion
T92 536-539 http://purl.obolibrary.org/obo/UBERON_0014899 denotes All
T93 536-539 http://id.nlm.nih.gov/mesh/D054198 denotes All
T94 536-539 http://purl.obolibrary.org/obo/CHEBI_37690 denotes All
T95 576-579 http://purl.obolibrary.org/obo/SO_0001180 denotes are
T96 576-579 http://purl.obolibrary.org/obo/SO_0001853 denotes are
T97 630-639 http://purl.obolibrary.org/obo/GO_0033269 denotes internode
T98 668-672 http://www.uniprot.org/uniprot/P50106 denotes a 14
T99 668-672 http://web.expasy.org/cellosaurus/CVCL_6309 denotes a 14
T100 668-672 http://web.expasy.org/cellosaurus/CVCL_L990 denotes a 14
T101 673-676 http://purl.obolibrary.org/obo/PR_000015935 denotes kbp
T102 673-676 http://purl.obolibrary.org/obo/PR_Q6ZPU9 denotes kbp
T103 673-676 http://purl.obolibrary.org/obo/PR_Q54SU1 denotes kbp
T104 673-676 http://purl.obolibrary.org/obo/PR_Q4G074 denotes kbp
T105 673-676 http://www.uniprot.org/uniprot/P05545 denotes kbp
T106 673-676 http://purl.obolibrary.org/obo/PR_P0ADE6 denotes kbp
T107 673-676 http://purl.obolibrary.org/obo/PR_000009599 denotes kbp
T108 673-676 http://purl.obolibrary.org/obo/PR_A8WE67 denotes kbp
T109 673-676 http://purl.obolibrary.org/obo/PR_Q96EK5 denotes kbp
T110 673-676 http://purl.obolibrary.org/obo/PR_P19439 denotes kbp
T111 673-676 http://www.uniprot.org/uniprot/P29621 denotes kbp
T112 673-676 http://www.uniprot.org/uniprot/P20262 denotes kbp
T113 673-676 http://purl.obolibrary.org/obo/PR_Q5ZIL9 denotes kbp
T114 677-688 http://purl.obolibrary.org/obo/SO_0000991 denotes genomic DNA
T115 685-688 http://id.nlm.nih.gov/mesh/D004247 denotes DNA
T116 685-688 http://purl.obolibrary.org/obo/SO_0000352 denotes DNA
T117 685-688 http://purl.obolibrary.org/obo/GO_0005574 denotes DNA
T118 685-688 http://purl.obolibrary.org/obo/CHEBI_16991 denotes DNA
T119 689-697 http://purl.obolibrary.org/obo/SO_0000731 denotes fragment
T120 712-715 http://purl.obolibrary.org/obo/UBERON_0014899 denotes all
T121 712-715 http://id.nlm.nih.gov/mesh/D054198 denotes all
T122 712-715 http://purl.obolibrary.org/obo/CHEBI_37690 denotes all
T123 731-734 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T124 731-734 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T125 739-742 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T126 739-742 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T127 739-744 http://web.expasy.org/cellosaurus/CVCL_B528 denotes and 3
T128 743-744 AMT1;2 denotes 3
T129 769-774 OSH15 denotes OSH15
T130 803-812 http://purl.obolibrary.org/obo/GO_0033269 denotes internode
T131 865-869 http://purl.obolibrary.org/obo/SO_0001743 denotes loss
T132 885-890 OSH15 denotes OSH15
T133 918-921 http://www.uniprot.org/uniprot/P0CL87 denotes had
T134 918-921 http://www.uniprot.org/uniprot/Q5LSJ4 denotes had
T135 918-921 http://www.uniprot.org/uniprot/Q2HD63 denotes had
T136 918-921 http://www.uniprot.org/uniprot/B4EFS7 denotes had
T137 918-921 http://purl.obolibrary.org/obo/PR_Q16836 denotes had
T138 918-921 http://www.uniprot.org/uniprot/Q39LI1 denotes had
T139 918-921 http://www.uniprot.org/uniprot/Q78JT3 denotes had
T140 918-921 http://www.uniprot.org/uniprot/B1KJM7 denotes had
T141 918-921 http://www.uniprot.org/uniprot/A7RIT9 denotes had
T142 918-921 http://www.uniprot.org/uniprot/Q8PM31 denotes had
T143 918-921 http://www.uniprot.org/uniprot/A3LP72 denotes had
T144 918-921 http://www.uniprot.org/uniprot/A4REV8 denotes had
T145 918-921 http://www.uniprot.org/uniprot/Q6P7I0 denotes had
T146 918-921 http://www.uniprot.org/uniprot/Q2P320 denotes had
T147 918-921 http://www.uniprot.org/uniprot/Q739J0 denotes had
T148 918-921 http://www.uniprot.org/uniprot/Q7SDX3 denotes had
T149 918-921 http://www.uniprot.org/uniprot/P47096 denotes had
T150 918-921 http://www.uniprot.org/uniprot/C1ERL1 denotes had
T151 918-921 http://www.uniprot.org/uniprot/Q60W34 denotes had
T152 918-921 http://www.uniprot.org/uniprot/Q4P2Q7 denotes had
T153 918-921 http://purl.obolibrary.org/obo/PR_Q9WVK7 denotes had
T154 918-921 http://www.uniprot.org/uniprot/A6X798 denotes had
T155 918-921 http://www.uniprot.org/uniprot/Q3BV37 denotes had
T156 918-921 http://www.uniprot.org/uniprot/Q6DIZ0 denotes had
T157 918-921 http://www.uniprot.org/uniprot/A5DLW3 denotes had
T158 918-921 http://www.uniprot.org/uniprot/B2T2S5 denotes had
T159 918-921 http://www.uniprot.org/uniprot/Q46PT7 denotes had
T160 918-921 http://www.uniprot.org/uniprot/P46953 denotes had
T161 918-921 http://www.uniprot.org/uniprot/B0RUZ7 denotes had
T162 918-921 http://www.uniprot.org/uniprot/Q59K86 denotes had
T163 918-921 http://www.uniprot.org/uniprot/Q28SE8 denotes had
T164 918-921 http://www.uniprot.org/uniprot/Q1E5I0 denotes had
T165 918-921 http://www.uniprot.org/uniprot/Q54S02 denotes had
T166 918-921 http://www.uniprot.org/uniprot/B2AAJ5 denotes had
T167 918-921 http://www.uniprot.org/uniprot/Q8PAD0 denotes had
T168 918-921 http://www.uniprot.org/uniprot/Q83V26 denotes had
T169 918-921 http://www.uniprot.org/uniprot/Q0D1U6 denotes had
T170 918-921 http://www.uniprot.org/uniprot/Q6CFX1 denotes had
T171 918-921 http://www.uniprot.org/uniprot/Q5U3F8 denotes had
T172 918-921 http://www.uniprot.org/uniprot/P46952 denotes had
T173 918-921 http://www.uniprot.org/uniprot/Q19341 denotes had
T174 918-921 http://www.uniprot.org/uniprot/A5E0Z9 denotes had
T175 918-921 http://www.uniprot.org/uniprot/A1DB76 denotes had
T176 918-921 http://www.uniprot.org/uniprot/Q75CP6 denotes had
T177 918-921 http://www.uniprot.org/uniprot/P0CL86 denotes had
T178 918-921 http://www.uniprot.org/uniprot/A0RD64 denotes had
T179 918-921 http://www.uniprot.org/uniprot/Q4UT95 denotes had
T180 918-921 http://www.uniprot.org/uniprot/A2R8S7 denotes had
T181 918-921 http://purl.obolibrary.org/obo/PR_000008432 denotes had
T182 918-921 http://purl.obolibrary.org/obo/PR_000008427 denotes had
T183 918-921 http://www.uniprot.org/uniprot/Q5H043 denotes had
T184 918-921 http://www.uniprot.org/uniprot/Q1LCS4 denotes had
T185 918-921 http://www.uniprot.org/uniprot/Q0VCA8 denotes had
T186 948-951 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T187 948-951 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T188 969-972 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T189 969-972 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T190 1006-1011 SDG725 denotes small
T191 1060-1064 http://purl.obolibrary.org/obo/UBERON_2002175 denotes role
T192 1060-1064 http://purl.obolibrary.org/obo/CHEBI_50906 denotes role
T193 1065-1068 http://purl.obolibrary.org/obo/PR_Q9NZC7 denotes for
T194 1065-1068 http://purl.obolibrary.org/obo/PR_000001036 denotes for
T195 1069-1074 OSH15 denotes OSH15
T196 1082-1093 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T197 1097-1101 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T198 1097-1101 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T199 1097-1101 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T200 1114-1118 http://purl.obolibrary.org/obo/PR_000024065 denotes This
T201 1114-1118 http://purl.obolibrary.org/obo/PR_O32583 denotes This
T202 1190-1195 http://www.ncbi.nlm.nih.gov/taxonomy/32644 denotes other
T203 1223-1232 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T204 1233-1236 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T205 1233-1236 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T206 1255-1260 http://id.nlm.nih.gov/mesh/D010944 denotes plant
T207 1261-1272 http://purl.obolibrary.org/obo/GO_0032502 denotes development

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 1201-1222 PO:0020148, funRiceGene:166, xzyao:10549 denotes shoot apical meristem
M_1 399-408 WTO:0000005 denotes phenotype
M_2 1207-1222 xzyao:10616 denotes apical meristem
M_3 133-146 funRiceGene:51, xzyao:3252 denotes homeobox gene
M_4 210-223 funRiceGene:51, xzyao:3252 denotes homeobox gene
M_5 1207-1222 PO:0020144, xzyao:6713 denotes apical meristem
M_6 1214-1222 funRiceGene:300 denotes meristem
M_7 1082-1093 WTO:0000011, funRiceGene:359 denotes development
M_8 1201-1232 xzyao:17835 denotes shoot apical meristem formation
M_9 1201-1206 funRiceGene:87 denotes shoot
M_10 154-175 hunflair:NA:Gene denotes Oryza sativa homeobox
M_11 154-166 hunflair:NA:Species denotes Oryza sativa
M_12 34-38 hunflair:NA:Species denotes rice
M_13 128-132 hunflair:NA:Species denotes rice
M_14 380-384 hunflair:NA:Species denotes rice
M_15 1097-1101 hunflair:NA:Species denotes rice
M_16 196-230 hunflair:NA:Gene denotes knotted1-type homeobox gene family
M_17 196-209 hunflair:NA:Gene denotes knotted1-type
M_18 1150-1163 hunflair:NA:Gene denotes knotted1-type
M_19 53-58 hunflair:NA:Gene denotes OSH15
M_20 147-152 hunflair:NA:Gene denotes OSH15
M_21 324-329 hunflair:NA:Gene denotes OSH15
M_22 769-774 hunflair:NA:Gene denotes OSH15
M_23 885-890 hunflair:NA:Gene denotes OSH15
M_24 1069-1074 hunflair:NA:Gene denotes OSH15
M_25 154-166 pubtator:4530:Species denotes Oryza sativa
M_26 34-38 pubtator:4530:Species denotes rice
M_27 128-132 pubtator:4530:Species denotes rice
M_28 380-384 pubtator:4530:Species denotes rice
M_29 1097-1101 pubtator:4530:Species denotes rice

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 110-115 http://identifiers.org/oryzabase.gene/846 denotes dwarf
T2 348-363 http://identifiers.org/oryzabase.gene/2983 denotes retrotransposon

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 1207-1232 cand:PO:0020144-apical meristem denotes apical meristem formation
M_1 1207-1232 cand:TO:0006020-shoot apical meristem development denotes apical meristem formation
M_2 1207-1232 cand:funRiceGene:237-shoot apical meristem denotes apical meristem formation
M_3 1207-1232 cand:PO:0009108-inflorescence apical meristem denotes apical meristem formation
M_4 1207-1232 cand:PO:0006081-primary root apical meristem denotes apical meristem formation
M_5 1207-1232 cand:PO:0006362-embryo shoot apical meristem denotes apical meristem formation
M_6 1207-1232 cand:funRiceGene:467-pollen exine formation denotes apical meristem formation
M_7 1207-1232 cand:TO:0002767-rhizome formation denotes apical meristem formation
M_8 1207-1232 cand:TO:0006030-spikelet meristem identity denotes apical meristem formation
M_9 1207-1232 cand:PO:0007527-2 root meristem formation stage denotes apical meristem formation
M_10 1150-1163 GeneID:NA denotes knotted1-type
M_12 110-115 funRiceGene:135 denotes dwarf
M_13 399-408 WTO:0000005 denotes phenotype
M_14 39-52 funRiceGene:51 denotes homeobox gene
M_15 133-146 funRiceGene:51 denotes homeobox gene
M_16 210-223 funRiceGene:51 denotes homeobox gene
M_17 1006-1028 xzyao:43645 denotes small vascular bundles
M_18 677-697 xzyao:23182 denotes genomic DNA fragment
M_19 34-52 xzyao:6995 denotes rice homeobox gene
M_20 128-146 xzyao:6995 denotes rice homeobox gene
M_21 1164-1178 xzyao:21804 denotes homeobox genes
M_22 1150-1178 xzyao:26506 denotes knotted1-type homeobox genes
T94003 413-425 xzyao:41109 denotes map position
T97137 1214-1222 funRiceGene:300 denotes meristem
T78347 70-82 funRiceGene:351 denotes architecture
M_11 1201-1206 funRiceGene:87 denotes shoot
T50057 1255-1272 funRiceGene:374, xzyao:18955 denotes plant development
T44255 154-166 xzyao:1553 denotes Oryza sativa
T13297 1082-1093 WTO:0000011, funRiceGene:359 denotes development
T50950 1261-1272 WTO:0000011, funRiceGene:359 denotes development
T64766 1207-1232 xzyao:8087 denotes apical meristem formation
T99144 1207-1222 PO:0020144, xzyao:14070 denotes apical meristem
T28030 110-122 xzyao:27984 denotes dwarf plants
T5092 1012-1028 xzyao:32640 denotes vascular bundles
M_23 630-650 funRiceGene:333, xzyao:23240 denotes internode elongation
M_24 803-823 funRiceGene:333, xzyao:23240 denotes internode elongation
M_25 1201-1222 PO:0020148, funRiceGene:166, xzyao:41020 denotes shoot apical meristem
M_26 1214-1232 xzyao:25972 denotes meristem formation
M_27 34-58 xzyao:7228 denotes rice homeobox gene OSH15
M_28 128-152 xzyao:7228 denotes rice homeobox gene OSH15
M_29 1097-1112 xzyao:29975 denotes rice internodes
M_30 685-697 xzyao:40212 denotes DNA fragment
M_31 53-58 hunflair:NA:Gene denotes OSH15
M_32 147-152 hunflair:NA:Gene denotes OSH15
M_33 324-329 hunflair:NA:Gene denotes OSH15
M_34 769-774 hunflair:NA:Gene denotes OSH15
M_35 885-890 hunflair:NA:Gene denotes OSH15
M_36 1069-1074 hunflair:NA:Gene denotes OSH15
M_37 196-209 hunflair:NA:Gene denotes knotted1-type
M_38 1150-1163 hunflair:NA:Gene denotes knotted1-type
M_39 154-166 hunflair:NA:Species denotes Oryza sativa
M_40 196-230 hunflair:NA:Gene denotes knotted1-type homeobox gene family
M_41 34-38 hunflair:NA:Species denotes rice
M_42 128-132 hunflair:NA:Species denotes rice
M_43 380-384 hunflair:NA:Species denotes rice
M_44 1097-1101 hunflair:NA:Species denotes rice
M_45 154-175 hunflair:NA:Gene denotes Oryza sativa homeobox
M_46 154-166 pubtator:4530:Species denotes Oryza sativa
M_47 34-38 pubtator:4530:Species denotes rice
M_48 128-132 pubtator:4530:Species denotes rice
M_49 380-384 pubtator:4530:Species denotes rice
M_50 1097-1101 pubtator:4530:Species denotes rice

PMID_GLOBAL

Id Subject Object Predicate Lexical cue
T1 0-123 Sentence denotes Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
T2 124-231 Sentence denotes The rice homeobox gene OSH15 (Oryza sativa homeobox) is a member of the knotted1-type homeobox gene family.
T3 232-385 Sentence denotes We report here on the identification and characterization of a loss-of-function mutation in OSH15 from a library of retrotransposon-tagged lines of rice.
T4 386-535 Sentence denotes Based on the phenotype and map position, we have identified three independent deletion alleles of the locus among conventional morphological mutants.
T5 536-651 Sentence denotes All of these recessive mutations, which are considered to be null alleles, exhibit defects in internode elongation.
T6 652-891 Sentence denotes Introduction of a 14 kbp genomic DNA fragment that includes all exons, introns and 5'- and 3'- flanking sequences of OSH15 complemented the defects in internode elongation, confirming that they were caused by the loss-of-function of OSH15.
T7 892-1029 Sentence denotes Internodes of the mutants had abnormal-shaped epidermal and hypodermal cells and showed an unusual arrangement of small vascular bundles.
T8 1030-1113 Sentence denotes These mutations demonstrate a role for OSH15 in the development of rice internodes.
T9 1114-1273 Sentence denotes This is the first evidence that the knotted1-type homeobox genes have roles other than shoot apical meristem formation and/or maintenance in plant development.

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 53-58 http://identifiers.org/oryzabase.gene/2975 denotes OSH15
T2 147-152 http://identifiers.org/oryzabase.gene/2975 denotes OSH15
T3 324-329 http://identifiers.org/oryzabase.gene/2975 denotes OSH15
T4 769-774 http://identifiers.org/oryzabase.gene/2975 denotes OSH15
T5 885-890 http://identifiers.org/oryzabase.gene/2975 denotes OSH15
T6 1069-1074 http://identifiers.org/oryzabase.gene/2975 denotes OSH15
T94302 53-58 http://identifiers.org/rapdb.locus/Os07g0129700 denotes OSH15
T46491 147-152 http://identifiers.org/rapdb.locus/Os07g0129700 denotes OSH15
T26654 324-329 http://identifiers.org/rapdb.locus/Os07g0129700 denotes OSH15
T34743 769-774 http://identifiers.org/rapdb.locus/Os07g0129700 denotes OSH15
T15755 885-890 http://identifiers.org/rapdb.locus/Os07g0129700 denotes OSH15
T75028 1069-1074 http://identifiers.org/rapdb.locus/Os07g0129700 denotes OSH15

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 196-230 hunflair:NA:Gene denotes knotted1-type homeobox gene family
M_1 154-166 hunflair:NA:Species denotes Oryza sativa
M_2 196-209 hunflair:NA:Gene denotes knotted1-type
M_3 1150-1163 hunflair:NA:Gene denotes knotted1-type
M_4 34-38 hunflair:NA:Species denotes rice
M_5 128-132 hunflair:NA:Species denotes rice
M_6 380-384 hunflair:NA:Species denotes rice
M_7 1097-1101 hunflair:NA:Species denotes rice
M_8 53-58 hunflair:NA:Gene denotes OSH15
M_9 147-152 hunflair:NA:Gene denotes OSH15
M_10 324-329 hunflair:NA:Gene denotes OSH15
M_11 769-774 hunflair:NA:Gene denotes OSH15
M_12 885-890 hunflair:NA:Gene denotes OSH15
M_13 1069-1074 hunflair:NA:Gene denotes OSH15
M_14 154-175 hunflair:NA:Gene denotes Oryza sativa homeobox

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 53-58 http://identifiers.org/oryzabase.gene/2975 denotes OSH15
T2 110-115 http://identifiers.org/oryzabase.gene/846 denotes dwarf
T3 110-115 http://identifiers.org/oryzabase.gene/3037 denotes dwarf
T4 147-152 http://identifiers.org/oryzabase.gene/2975 denotes OSH15
T5 324-329 http://identifiers.org/oryzabase.gene/2975 denotes OSH15
T6 348-363 http://identifiers.org/oryzabase.gene/2983 denotes retrotransposon
T7 413-416 http://identifiers.org/oryzabase.gene/12401 denotes map
T8 769-774 http://identifiers.org/oryzabase.gene/2975 denotes OSH15
T9 885-890 http://identifiers.org/oryzabase.gene/2975 denotes OSH15
T10 1006-1011 http://identifiers.org/oryzabase.gene/11165 denotes small
T11 1069-1074 http://identifiers.org/oryzabase.gene/2975 denotes OSH15
T51922 53-58 http://identifiers.org/ricegap/LOC_Os07g03770 denotes OSH15
T93832 110-115 http://identifiers.org/ricegap/LOC_Os03g40540 denotes dwarf
T32428 147-152 http://identifiers.org/ricegap/LOC_Os07g03770 denotes OSH15
T26503 324-329 http://identifiers.org/ricegap/LOC_Os07g03770 denotes OSH15
T31208 413-416 http://identifiers.org/ricegap/LOC_Os08g40620 denotes map
T87686 769-774 http://identifiers.org/ricegap/LOC_Os07g03770 denotes OSH15
T43239 885-890 http://identifiers.org/ricegap/LOC_Os07g03770 denotes OSH15
T10731 1006-1011 http://identifiers.org/ricegap/LOC_Os02g34850 denotes small
T44768 1069-1074 http://identifiers.org/ricegap/LOC_Os07g03770 denotes OSH15
T4343 1207-1222 http://identifiers.org/ricegap/LOC_Os12g29330 denotes apical meristem
T50035 1207-1222 http://identifiers.org/ricegap/LOC_Os11g03370 denotes apical meristem
T12 1207-1222 http://identifiers.org/ricegap/LOC_Os06g23650 denotes apical meristem
T13 1207-1222 http://identifiers.org/ricegap/LOC_Os06g04090 denotes apical meristem
T75447 53-58 http://identifiers.org/rapdb.locus/Os07g0129700 denotes OSH15
T3190 110-115 http://identifiers.org/rapdb.locus/Os03g0602300 denotes dwarf
T16362 147-152 http://identifiers.org/rapdb.locus/Os07g0129700 denotes OSH15
T70717 324-329 http://identifiers.org/rapdb.locus/Os07g0129700 denotes OSH15
T29320 413-416 http://identifiers.org/rapdb.locus/Os08g0518100 denotes map
T93788 769-774 http://identifiers.org/rapdb.locus/Os07g0129700 denotes OSH15
T30449 885-890 http://identifiers.org/rapdb.locus/Os07g0129700 denotes OSH15
T90828 1006-1011 http://identifiers.org/rapdb.locus/Os02g0554000 denotes small
T60152 1069-1074 http://identifiers.org/rapdb.locus/Os07g0129700 denotes OSH15
T21351 1207-1222 http://identifiers.org/rapdb.locus/Os12g0477400 denotes apical meristem
T81860 1207-1222 http://identifiers.org/rapdb.locus/Os11g0127600 denotes apical meristem
T45348 1207-1222 http://identifiers.org/rapdb.locus/Os06g0344900 denotes apical meristem
T22223 1207-1222 http://identifiers.org/rapdb.locus/Os06g0131700 denotes apical meristem
T42816 53-58 http://identifiers.org/uniprot/O80416 denotes OSH15
T11916 147-152 http://identifiers.org/uniprot/O80416 denotes OSH15
T17067 324-329 http://identifiers.org/uniprot/O80416 denotes OSH15
T33155 769-774 http://identifiers.org/uniprot/O80416 denotes OSH15
T78884 885-890 http://identifiers.org/uniprot/O80416 denotes OSH15
T34546 1069-1074 http://identifiers.org/uniprot/O80416 denotes OSH15
M_0 196-230 hunflair:NA:Gene denotes knotted1-type homeobox gene family
M_1 154-166 hunflair:NA:Species denotes Oryza sativa
M_2 196-209 hunflair:NA:Gene denotes knotted1-type
M_3 1150-1163 hunflair:NA:Gene denotes knotted1-type
M_4 34-38 hunflair:NA:Species denotes rice
M_5 128-132 hunflair:NA:Species denotes rice
M_6 380-384 hunflair:NA:Species denotes rice
M_7 1097-1101 hunflair:NA:Species denotes rice
M_8 53-58 hunflair:NA:Gene denotes OSH15
M_9 147-152 hunflair:NA:Gene denotes OSH15
M_10 324-329 hunflair:NA:Gene denotes OSH15
M_11 769-774 hunflair:NA:Gene denotes OSH15
M_12 885-890 hunflair:NA:Gene denotes OSH15
M_13 1069-1074 hunflair:NA:Gene denotes OSH15
M_14 154-175 hunflair:NA:Gene denotes Oryza sativa homeobox