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Oryza-OGER

Id	Subject	Object	Predicate	Lexical cue
T1	0-4	http://purl.obolibrary.org/obo/SO_0001743	denotes	Loss
T2	34-38	http://id.nlm.nih.gov/mesh/D012275	denotes	rice
T3	34-38	http://purl.bioontology.org/ontology/RXNORM/1311040	denotes	rice
T4	34-38	http://www.ncbi.nlm.nih.gov/taxonomy/4530	denotes	rice
T5	48-52	http://purl.obolibrary.org/obo/SO_0000704	denotes	gene
T6	53-58	OSH15	denotes	OSH15
T7	110-115	D57	denotes	dwarf
T8	110-115	BRD1	denotes	dwarf
T9	116-122	http://id.nlm.nih.gov/mesh/D010944	denotes	plants
T10	128-132	http://id.nlm.nih.gov/mesh/D012275	denotes	rice
T11	128-132	http://purl.bioontology.org/ontology/RXNORM/1311040	denotes	rice
T12	128-132	http://www.ncbi.nlm.nih.gov/taxonomy/4530	denotes	rice
T13	142-146	http://purl.obolibrary.org/obo/SO_0000704	denotes	gene
T14	147-152	OSH15	denotes	OSH15
T15	154-159	http://id.nlm.nih.gov/mesh/D012275	denotes	Oryza
T16	154-166	http://www.ncbi.nlm.nih.gov/taxonomy/4530	denotes	Oryza sativa
T17	154-166	http://id.nlm.nih.gov/mesh/D012275	denotes	Oryza sativa
T18	219-223	http://purl.obolibrary.org/obo/SO_0000704	denotes	gene
T19	269-272	http://purl.obolibrary.org/obo/PR_P49258	denotes	and
T20	269-272	http://www.ncbi.nlm.nih.gov/taxonomy/1481724	denotes	and
T21	295-299	http://purl.obolibrary.org/obo/SO_0001743	denotes	loss
T22	312-320	http://purl.obolibrary.org/obo/SO_0000109	denotes	mutation
T23	324-329	OSH15	denotes	OSH15
T24	348-363	KARMA	denotes	retrotransposon
T25	348-363	http://id.nlm.nih.gov/mesh/D018626	denotes	retrotransposon
T26	348-363	http://purl.obolibrary.org/obo/SO_0000180	denotes	retrotransposon
T27	380-384	http://id.nlm.nih.gov/mesh/D012275	denotes	rice
T28	380-384	http://purl.bioontology.org/ontology/RXNORM/1311040	denotes	rice
T29	380-384	http://www.ncbi.nlm.nih.gov/taxonomy/4530	denotes	rice
T30	409-412	http://purl.obolibrary.org/obo/PR_P49258	denotes	and
T31	409-412	http://www.ncbi.nlm.nih.gov/taxonomy/1481724	denotes	and
T32	413-416	http://purl.obolibrary.org/obo/PR_P9WK19	denotes	map
T33	413-416	http://www.uniprot.org/uniprot/P56218	denotes	map
T34	413-416	http://www.uniprot.org/uniprot/O52353	denotes	map
T35	413-416	http://purl.obolibrary.org/obo/CHEBI_145457	denotes	map
T36	413-416	http://www.uniprot.org/uniprot/O84859	denotes	map
T37	413-416	http://www.uniprot.org/uniprot/P95963	denotes	map
T38	413-416	http://www.uniprot.org/uniprot/Q9PL68	denotes	map
T39	413-416	http://www.uniprot.org/uniprot/P0A1X7	denotes	map
T40	413-416	http://www.uniprot.org/uniprot/Q59509	denotes	map
T41	413-416	http://www.uniprot.org/uniprot/P0A1X6	denotes	map
T42	413-416	http://purl.obolibrary.org/obo/PR_000014806	denotes	map
T43	413-416	http://purl.obolibrary.org/obo/GO_0004239	denotes	map
T44	413-416	http://www.uniprot.org/uniprot/B6YTG0	denotes	map
T45	413-416	http://www.uniprot.org/uniprot/O83814	denotes	map
T46	413-416	http://www.uniprot.org/uniprot/P50614	denotes	map
T47	413-416	http://www.uniprot.org/uniprot/Q5HN46	denotes	map
T48	413-416	http://www.uniprot.org/uniprot/O51132	denotes	map
T49	413-416	http://www.uniprot.org/uniprot/P99121	denotes	map
T50	413-416	http://www.uniprot.org/uniprot/P0A5J3	denotes	map
T51	413-416	http://www.uniprot.org/uniprot/Q58725	denotes	map
T52	413-416	http://www.uniprot.org/uniprot/Q11132	denotes	map
T53	413-416	http://purl.obolibrary.org/obo/PR_000029173	denotes	map
T54	413-416	http://www.uniprot.org/uniprot/P22624	denotes	map
T55	413-416	http://www.uniprot.org/uniprot/Q8K9T1	denotes	map
T56	413-416	http://www.uniprot.org/uniprot/P47418	denotes	map
T57	413-416	http://www.uniprot.org/uniprot/Q89AP3	denotes	map
T58	413-416	http://www.uniprot.org/uniprot/P79263	denotes	map
T59	413-416	http://www.uniprot.org/uniprot/Q9UYT4	denotes	map
T60	413-416	http://www.uniprot.org/uniprot/Q9ZCD3	denotes	map
T61	413-416	http://www.uniprot.org/uniprot/Q9ZJT0	denotes	map
T62	413-416	http://www.uniprot.org/uniprot/P41392	denotes	map
T63	413-416	http://www.uniprot.org/uniprot/P0AE21	denotes	map
T64	413-416	http://www.uniprot.org/uniprot/Q5HEN6	denotes	map
T65	413-416	http://www.uniprot.org/uniprot/P0AE19	denotes	map
T66	413-416	http://purl.obolibrary.org/obo/PR_P0A078	denotes	map
T67	413-416	http://www.uniprot.org/uniprot/O28438	denotes	map
T68	413-416	http://www.uniprot.org/uniprot/Q8CRU9	denotes	map
T69	413-416	http://www.uniprot.org/uniprot/P57324	denotes	map
T70	413-416	http://www.uniprot.org/uniprot/P0AE18	denotes	map
T71	413-416	http://www.uniprot.org/uniprot/P44421	denotes	map
T72	413-416	http://purl.obolibrary.org/obo/PR_P19994	denotes	map
T73	413-416	http://purl.obolibrary.org/obo/PR_000023165	denotes	map
T74	413-416	http://purl.obolibrary.org/obo/PR_Q96HU1	denotes	map
T75	413-416	http://www.uniprot.org/uniprot/O66489	denotes	map
T76	413-416	http://www.uniprot.org/uniprot/P0A078	denotes	map
T77	413-416	http://purl.obolibrary.org/obo/PR_P0AE18	denotes	map
T78	413-416	http://www.uniprot.org/uniprot/P0A080	denotes	map
T79	413-416	http://www.uniprot.org/uniprot/P69000	denotes	map
T80	413-416	http://www.uniprot.org/uniprot/Q5JGD1	denotes	map
T81	413-416	http://www.uniprot.org/uniprot/O58362	denotes	map
T82	413-416	http://www.uniprot.org/uniprot/P0AE20	denotes	map
T83	413-416	http://www.uniprot.org/uniprot/P56102	denotes	map
T84	413-416	http://www.uniprot.org/uniprot/Q9Z6Q0	denotes	map
T85	413-416	http://www.uniprot.org/uniprot/P0A079	denotes	map
T86	413-416	http://www.uniprot.org/uniprot/O27355	denotes	map
T87	413-416	http://www.uniprot.org/uniprot/P28617	denotes	map
T88	413-416	http://www.uniprot.org/uniprot/Q6GFG9	denotes	map
T89	413-416	http://www.uniprot.org/uniprot/Q6G846	denotes	map
T90	413-416	http://www.uniprot.org/uniprot/Q9Z9J4	denotes	map
T91	464-472	http://purl.obolibrary.org/obo/SO_0000159	denotes	deletion
T92	536-539	http://purl.obolibrary.org/obo/UBERON_0014899	denotes	All
T93	536-539	http://id.nlm.nih.gov/mesh/D054198	denotes	All
T94	536-539	http://purl.obolibrary.org/obo/CHEBI_37690	denotes	All
T95	576-579	http://purl.obolibrary.org/obo/SO_0001180	denotes	are
T96	576-579	http://purl.obolibrary.org/obo/SO_0001853	denotes	are
T97	630-639	http://purl.obolibrary.org/obo/GO_0033269	denotes	internode
T98	668-672	http://www.uniprot.org/uniprot/P50106	denotes	a 14
T99	668-672	http://web.expasy.org/cellosaurus/CVCL_6309	denotes	a 14
T100	668-672	http://web.expasy.org/cellosaurus/CVCL_L990	denotes	a 14
T101	673-676	http://purl.obolibrary.org/obo/PR_000015935	denotes	kbp
T102	673-676	http://purl.obolibrary.org/obo/PR_Q6ZPU9	denotes	kbp
T103	673-676	http://purl.obolibrary.org/obo/PR_Q54SU1	denotes	kbp
T104	673-676	http://purl.obolibrary.org/obo/PR_Q4G074	denotes	kbp
T105	673-676	http://www.uniprot.org/uniprot/P05545	denotes	kbp
T106	673-676	http://purl.obolibrary.org/obo/PR_P0ADE6	denotes	kbp
T107	673-676	http://purl.obolibrary.org/obo/PR_000009599	denotes	kbp
T108	673-676	http://purl.obolibrary.org/obo/PR_A8WE67	denotes	kbp
T109	673-676	http://purl.obolibrary.org/obo/PR_Q96EK5	denotes	kbp
T110	673-676	http://purl.obolibrary.org/obo/PR_P19439	denotes	kbp
T111	673-676	http://www.uniprot.org/uniprot/P29621	denotes	kbp
T112	673-676	http://www.uniprot.org/uniprot/P20262	denotes	kbp
T113	673-676	http://purl.obolibrary.org/obo/PR_Q5ZIL9	denotes	kbp
T114	677-688	http://purl.obolibrary.org/obo/SO_0000991	denotes	genomic DNA
T115	685-688	http://id.nlm.nih.gov/mesh/D004247	denotes	DNA
T116	685-688	http://purl.obolibrary.org/obo/SO_0000352	denotes	DNA
T117	685-688	http://purl.obolibrary.org/obo/GO_0005574	denotes	DNA
T118	685-688	http://purl.obolibrary.org/obo/CHEBI_16991	denotes	DNA
T119	689-697	http://purl.obolibrary.org/obo/SO_0000731	denotes	fragment
T120	712-715	http://purl.obolibrary.org/obo/UBERON_0014899	denotes	all
T121	712-715	http://id.nlm.nih.gov/mesh/D054198	denotes	all
T122	712-715	http://purl.obolibrary.org/obo/CHEBI_37690	denotes	all
T123	731-734	http://purl.obolibrary.org/obo/PR_P49258	denotes	and
T124	731-734	http://www.ncbi.nlm.nih.gov/taxonomy/1481724	denotes	and
T125	739-742	http://purl.obolibrary.org/obo/PR_P49258	denotes	and
T126	739-742	http://www.ncbi.nlm.nih.gov/taxonomy/1481724	denotes	and
T127	739-744	http://web.expasy.org/cellosaurus/CVCL_B528	denotes	and 3
T128	743-744	AMT1;2	denotes	3
T129	769-774	OSH15	denotes	OSH15
T130	803-812	http://purl.obolibrary.org/obo/GO_0033269	denotes	internode
T131	865-869	http://purl.obolibrary.org/obo/SO_0001743	denotes	loss
T132	885-890	OSH15	denotes	OSH15
T133	918-921	http://www.uniprot.org/uniprot/P0CL87	denotes	had
T134	918-921	http://www.uniprot.org/uniprot/Q5LSJ4	denotes	had
T135	918-921	http://www.uniprot.org/uniprot/Q2HD63	denotes	had
T136	918-921	http://www.uniprot.org/uniprot/B4EFS7	denotes	had
T137	918-921	http://purl.obolibrary.org/obo/PR_Q16836	denotes	had
T138	918-921	http://www.uniprot.org/uniprot/Q39LI1	denotes	had
T139	918-921	http://www.uniprot.org/uniprot/Q78JT3	denotes	had
T140	918-921	http://www.uniprot.org/uniprot/B1KJM7	denotes	had
T141	918-921	http://www.uniprot.org/uniprot/A7RIT9	denotes	had
T142	918-921	http://www.uniprot.org/uniprot/Q8PM31	denotes	had
T143	918-921	http://www.uniprot.org/uniprot/A3LP72	denotes	had
T144	918-921	http://www.uniprot.org/uniprot/A4REV8	denotes	had
T145	918-921	http://www.uniprot.org/uniprot/Q6P7I0	denotes	had
T146	918-921	http://www.uniprot.org/uniprot/Q2P320	denotes	had
T147	918-921	http://www.uniprot.org/uniprot/Q739J0	denotes	had
T148	918-921	http://www.uniprot.org/uniprot/Q7SDX3	denotes	had
T149	918-921	http://www.uniprot.org/uniprot/P47096	denotes	had
T150	918-921	http://www.uniprot.org/uniprot/C1ERL1	denotes	had
T151	918-921	http://www.uniprot.org/uniprot/Q60W34	denotes	had
T152	918-921	http://www.uniprot.org/uniprot/Q4P2Q7	denotes	had
T153	918-921	http://purl.obolibrary.org/obo/PR_Q9WVK7	denotes	had
T154	918-921	http://www.uniprot.org/uniprot/A6X798	denotes	had
T155	918-921	http://www.uniprot.org/uniprot/Q3BV37	denotes	had
T156	918-921	http://www.uniprot.org/uniprot/Q6DIZ0	denotes	had
T157	918-921	http://www.uniprot.org/uniprot/A5DLW3	denotes	had
T158	918-921	http://www.uniprot.org/uniprot/B2T2S5	denotes	had
T159	918-921	http://www.uniprot.org/uniprot/Q46PT7	denotes	had
T160	918-921	http://www.uniprot.org/uniprot/P46953	denotes	had
T161	918-921	http://www.uniprot.org/uniprot/B0RUZ7	denotes	had
T162	918-921	http://www.uniprot.org/uniprot/Q59K86	denotes	had
T163	918-921	http://www.uniprot.org/uniprot/Q28SE8	denotes	had
T164	918-921	http://www.uniprot.org/uniprot/Q1E5I0	denotes	had
T165	918-921	http://www.uniprot.org/uniprot/Q54S02	denotes	had
T166	918-921	http://www.uniprot.org/uniprot/B2AAJ5	denotes	had
T167	918-921	http://www.uniprot.org/uniprot/Q8PAD0	denotes	had
T168	918-921	http://www.uniprot.org/uniprot/Q83V26	denotes	had
T169	918-921	http://www.uniprot.org/uniprot/Q0D1U6	denotes	had
T170	918-921	http://www.uniprot.org/uniprot/Q6CFX1	denotes	had
T171	918-921	http://www.uniprot.org/uniprot/Q5U3F8	denotes	had
T172	918-921	http://www.uniprot.org/uniprot/P46952	denotes	had
T173	918-921	http://www.uniprot.org/uniprot/Q19341	denotes	had
T174	918-921	http://www.uniprot.org/uniprot/A5E0Z9	denotes	had
T175	918-921	http://www.uniprot.org/uniprot/A1DB76	denotes	had
T176	918-921	http://www.uniprot.org/uniprot/Q75CP6	denotes	had
T177	918-921	http://www.uniprot.org/uniprot/P0CL86	denotes	had
T178	918-921	http://www.uniprot.org/uniprot/A0RD64	denotes	had
T179	918-921	http://www.uniprot.org/uniprot/Q4UT95	denotes	had
T180	918-921	http://www.uniprot.org/uniprot/A2R8S7	denotes	had
T181	918-921	http://purl.obolibrary.org/obo/PR_000008432	denotes	had
T182	918-921	http://purl.obolibrary.org/obo/PR_000008427	denotes	had
T183	918-921	http://www.uniprot.org/uniprot/Q5H043	denotes	had
T184	918-921	http://www.uniprot.org/uniprot/Q1LCS4	denotes	had
T185	918-921	http://www.uniprot.org/uniprot/Q0VCA8	denotes	had
T186	948-951	http://purl.obolibrary.org/obo/PR_P49258	denotes	and
T187	948-951	http://www.ncbi.nlm.nih.gov/taxonomy/1481724	denotes	and
T188	969-972	http://purl.obolibrary.org/obo/PR_P49258	denotes	and
T189	969-972	http://www.ncbi.nlm.nih.gov/taxonomy/1481724	denotes	and
T190	1006-1011	SDG725	denotes	small
T191	1060-1064	http://purl.obolibrary.org/obo/UBERON_2002175	denotes	role
T192	1060-1064	http://purl.obolibrary.org/obo/CHEBI_50906	denotes	role
T193	1065-1068	http://purl.obolibrary.org/obo/PR_Q9NZC7	denotes	for
T194	1065-1068	http://purl.obolibrary.org/obo/PR_000001036	denotes	for
T195	1069-1074	OSH15	denotes	OSH15
T196	1082-1093	http://purl.obolibrary.org/obo/GO_0032502	denotes	development
T197	1097-1101	http://id.nlm.nih.gov/mesh/D012275	denotes	rice
T198	1097-1101	http://purl.bioontology.org/ontology/RXNORM/1311040	denotes	rice
T199	1097-1101	http://www.ncbi.nlm.nih.gov/taxonomy/4530	denotes	rice
T200	1114-1118	http://purl.obolibrary.org/obo/PR_000024065	denotes	This
T201	1114-1118	http://purl.obolibrary.org/obo/PR_O32583	denotes	This
T202	1190-1195	http://www.ncbi.nlm.nih.gov/taxonomy/32644	denotes	other
T203	1223-1232	http://purl.obolibrary.org/obo/GO_0009058	denotes	formation
T204	1233-1236	http://purl.obolibrary.org/obo/PR_P49258	denotes	and
T205	1233-1236	http://www.ncbi.nlm.nih.gov/taxonomy/1481724	denotes	and
T206	1255-1260	http://id.nlm.nih.gov/mesh/D010944	denotes	plant
T207	1261-1272	http://purl.obolibrary.org/obo/GO_0032502	denotes	development

21k_plant_trait_mention

Id	Subject	Object	Predicate	Lexical cue
M_0	1201-1222	PO:0020148, funRiceGene:166, xzyao:10549	denotes	shoot apical meristem
M_1	399-408	WTO:0000005	denotes	phenotype
M_2	1207-1222	xzyao:10616	denotes	apical meristem
M_3	133-146	funRiceGene:51, xzyao:3252	denotes	homeobox gene
M_4	210-223	funRiceGene:51, xzyao:3252	denotes	homeobox gene
M_5	1207-1222	PO:0020144, xzyao:6713	denotes	apical meristem
M_6	1214-1222	funRiceGene:300	denotes	meristem
M_7	1082-1093	WTO:0000011, funRiceGene:359	denotes	development
M_8	1201-1232	xzyao:17835	denotes	shoot apical meristem formation
M_9	1201-1206	funRiceGene:87	denotes	shoot
M_10	154-175	hunflair:NA:Gene	denotes	Oryza sativa homeobox
M_11	154-166	hunflair:NA:Species	denotes	Oryza sativa
M_12	34-38	hunflair:NA:Species	denotes	rice
M_13	128-132	hunflair:NA:Species	denotes	rice
M_14	380-384	hunflair:NA:Species	denotes	rice
M_15	1097-1101	hunflair:NA:Species	denotes	rice
M_16	196-230	hunflair:NA:Gene	denotes	knotted1-type homeobox gene family
M_17	196-209	hunflair:NA:Gene	denotes	knotted1-type
M_18	1150-1163	hunflair:NA:Gene	denotes	knotted1-type
M_19	53-58	hunflair:NA:Gene	denotes	OSH15
M_20	147-152	hunflair:NA:Gene	denotes	OSH15
M_21	324-329	hunflair:NA:Gene	denotes	OSH15
M_22	769-774	hunflair:NA:Gene	denotes	OSH15
M_23	885-890	hunflair:NA:Gene	denotes	OSH15
M_24	1069-1074	hunflair:NA:Gene	denotes	OSH15
M_25	154-166	pubtator:4530:Species	denotes	Oryza sativa
M_26	34-38	pubtator:4530:Species	denotes	rice
M_27	128-132	pubtator:4530:Species	denotes	rice
M_28	380-384	pubtator:4530:Species	denotes	rice
M_29	1097-1101	pubtator:4530:Species	denotes	rice

OryzaGP_2022

Id	Subject	Object	Predicate	Lexical cue
T1	110-115	http://identifiers.org/oryzabase.gene/846	denotes	dwarf
T2	348-363	http://identifiers.org/oryzabase.gene/2983	denotes	retrotransposon

pqqtest_sentence

Id	Subject	Object	Predicate	Lexical cue
M_0	1207-1232	cand:PO:0020144-apical meristem	denotes	apical meristem formation
M_1	1207-1232	cand:TO:0006020-shoot apical meristem development	denotes	apical meristem formation
M_2	1207-1232	cand:funRiceGene:237-shoot apical meristem	denotes	apical meristem formation
M_3	1207-1232	cand:PO:0009108-inflorescence apical meristem	denotes	apical meristem formation
M_4	1207-1232	cand:PO:0006081-primary root apical meristem	denotes	apical meristem formation
M_5	1207-1232	cand:PO:0006362-embryo shoot apical meristem	denotes	apical meristem formation
M_6	1207-1232	cand:funRiceGene:467-pollen exine formation	denotes	apical meristem formation
M_7	1207-1232	cand:TO:0002767-rhizome formation	denotes	apical meristem formation
M_8	1207-1232	cand:TO:0006030-spikelet meristem identity	denotes	apical meristem formation
M_9	1207-1232	cand:PO:0007527-2 root meristem formation stage	denotes	apical meristem formation
M_10	1150-1163	GeneID:NA	denotes	knotted1-type
M_12	110-115	funRiceGene:135	denotes	dwarf
M_13	399-408	WTO:0000005	denotes	phenotype
M_14	39-52	funRiceGene:51	denotes	homeobox gene
M_15	133-146	funRiceGene:51	denotes	homeobox gene
M_16	210-223	funRiceGene:51	denotes	homeobox gene
M_17	1006-1028	xzyao:43645	denotes	small vascular bundles
M_18	677-697	xzyao:23182	denotes	genomic DNA fragment
M_19	34-52	xzyao:6995	denotes	rice homeobox gene
M_20	128-146	xzyao:6995	denotes	rice homeobox gene
M_21	1164-1178	xzyao:21804	denotes	homeobox genes
M_22	1150-1178	xzyao:26506	denotes	knotted1-type homeobox genes
T94003	413-425	xzyao:41109	denotes	map position
T97137	1214-1222	funRiceGene:300	denotes	meristem
T78347	70-82	funRiceGene:351	denotes	architecture
M_11	1201-1206	funRiceGene:87	denotes	shoot
T50057	1255-1272	funRiceGene:374, xzyao:18955	denotes	plant development
T44255	154-166	xzyao:1553	denotes	Oryza sativa
T13297	1082-1093	WTO:0000011, funRiceGene:359	denotes	development
T50950	1261-1272	WTO:0000011, funRiceGene:359	denotes	development
T64766	1207-1232	xzyao:8087	denotes	apical meristem formation
T99144	1207-1222	PO:0020144, xzyao:14070	denotes	apical meristem
T28030	110-122	xzyao:27984	denotes	dwarf plants
T5092	1012-1028	xzyao:32640	denotes	vascular bundles
M_23	630-650	funRiceGene:333, xzyao:23240	denotes	internode elongation
M_24	803-823	funRiceGene:333, xzyao:23240	denotes	internode elongation
M_25	1201-1222	PO:0020148, funRiceGene:166, xzyao:41020	denotes	shoot apical meristem
M_26	1214-1232	xzyao:25972	denotes	meristem formation
M_27	34-58	xzyao:7228	denotes	rice homeobox gene OSH15
M_28	128-152	xzyao:7228	denotes	rice homeobox gene OSH15
M_29	1097-1112	xzyao:29975	denotes	rice internodes
M_30	685-697	xzyao:40212	denotes	DNA fragment
M_31	53-58	hunflair:NA:Gene	denotes	OSH15
M_32	147-152	hunflair:NA:Gene	denotes	OSH15
M_33	324-329	hunflair:NA:Gene	denotes	OSH15
M_34	769-774	hunflair:NA:Gene	denotes	OSH15
M_35	885-890	hunflair:NA:Gene	denotes	OSH15
M_36	1069-1074	hunflair:NA:Gene	denotes	OSH15
M_37	196-209	hunflair:NA:Gene	denotes	knotted1-type
M_38	1150-1163	hunflair:NA:Gene	denotes	knotted1-type
M_39	154-166	hunflair:NA:Species	denotes	Oryza sativa
M_40	196-230	hunflair:NA:Gene	denotes	knotted1-type homeobox gene family
M_41	34-38	hunflair:NA:Species	denotes	rice
M_42	128-132	hunflair:NA:Species	denotes	rice
M_43	380-384	hunflair:NA:Species	denotes	rice
M_44	1097-1101	hunflair:NA:Species	denotes	rice
M_45	154-175	hunflair:NA:Gene	denotes	Oryza sativa homeobox
M_46	154-166	pubtator:4530:Species	denotes	Oryza sativa
M_47	34-38	pubtator:4530:Species	denotes	rice
M_48	128-132	pubtator:4530:Species	denotes	rice
M_49	380-384	pubtator:4530:Species	denotes	rice
M_50	1097-1101	pubtator:4530:Species	denotes	rice

PMID_GLOBAL

Id	Subject	Object	Predicate	Lexical cue
T1	0-123	Sentence	denotes	Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
T2	124-231	Sentence	denotes	The rice homeobox gene OSH15 (Oryza sativa homeobox) is a member of the knotted1-type homeobox gene family.
T3	232-385	Sentence	denotes	We report here on the identification and characterization of a loss-of-function mutation in OSH15 from a library of retrotransposon-tagged lines of rice.
T4	386-535	Sentence	denotes	Based on the phenotype and map position, we have identified three independent deletion alleles of the locus among conventional morphological mutants.
T5	536-651	Sentence	denotes	All of these recessive mutations, which are considered to be null alleles, exhibit defects in internode elongation.
T6	652-891	Sentence	denotes	Introduction of a 14 kbp genomic DNA fragment that includes all exons, introns and 5'- and 3'- flanking sequences of OSH15 complemented the defects in internode elongation, confirming that they were caused by the loss-of-function of OSH15.
T7	892-1029	Sentence	denotes	Internodes of the mutants had abnormal-shaped epidermal and hypodermal cells and showed an unusual arrangement of small vascular bundles.
T8	1030-1113	Sentence	denotes	These mutations demonstrate a role for OSH15 in the development of rice internodes.
T9	1114-1273	Sentence	denotes	This is the first evidence that the knotted1-type homeobox genes have roles other than shoot apical meristem formation and/or maintenance in plant development.

OryzaGP_2021_v2

Id	Subject	Object	Predicate	Lexical cue
T1	53-58	http://identifiers.org/oryzabase.gene/2975	denotes	OSH15
T2	147-152	http://identifiers.org/oryzabase.gene/2975	denotes	OSH15
T3	324-329	http://identifiers.org/oryzabase.gene/2975	denotes	OSH15
T4	769-774	http://identifiers.org/oryzabase.gene/2975	denotes	OSH15
T5	885-890	http://identifiers.org/oryzabase.gene/2975	denotes	OSH15
T6	1069-1074	http://identifiers.org/oryzabase.gene/2975	denotes	OSH15
T94302	53-58	http://identifiers.org/rapdb.locus/Os07g0129700	denotes	OSH15
T46491	147-152	http://identifiers.org/rapdb.locus/Os07g0129700	denotes	OSH15
T26654	324-329	http://identifiers.org/rapdb.locus/Os07g0129700	denotes	OSH15
T34743	769-774	http://identifiers.org/rapdb.locus/Os07g0129700	denotes	OSH15
T15755	885-890	http://identifiers.org/rapdb.locus/Os07g0129700	denotes	OSH15
T75028	1069-1074	http://identifiers.org/rapdb.locus/Os07g0129700	denotes	OSH15

OryzaGP_2021_FLAIR

Id	Subject	Object	Predicate	Lexical cue
M_0	196-230	hunflair:NA:Gene	denotes	knotted1-type homeobox gene family
M_1	154-166	hunflair:NA:Species	denotes	Oryza sativa
M_2	196-209	hunflair:NA:Gene	denotes	knotted1-type
M_3	1150-1163	hunflair:NA:Gene	denotes	knotted1-type
M_4	34-38	hunflair:NA:Species	denotes	rice
M_5	128-132	hunflair:NA:Species	denotes	rice
M_6	380-384	hunflair:NA:Species	denotes	rice
M_7	1097-1101	hunflair:NA:Species	denotes	rice
M_8	53-58	hunflair:NA:Gene	denotes	OSH15
M_9	147-152	hunflair:NA:Gene	denotes	OSH15
M_10	324-329	hunflair:NA:Gene	denotes	OSH15
M_11	769-774	hunflair:NA:Gene	denotes	OSH15
M_12	885-890	hunflair:NA:Gene	denotes	OSH15
M_13	1069-1074	hunflair:NA:Gene	denotes	OSH15
M_14	154-175	hunflair:NA:Gene	denotes	Oryza sativa homeobox

OryzaGP_2021

Id	Subject	Object	Predicate	Lexical cue
T1	53-58	http://identifiers.org/oryzabase.gene/2975	denotes	OSH15
T2	110-115	http://identifiers.org/oryzabase.gene/846	denotes	dwarf
T3	110-115	http://identifiers.org/oryzabase.gene/3037	denotes	dwarf
T4	147-152	http://identifiers.org/oryzabase.gene/2975	denotes	OSH15
T5	324-329	http://identifiers.org/oryzabase.gene/2975	denotes	OSH15
T6	348-363	http://identifiers.org/oryzabase.gene/2983	denotes	retrotransposon
T7	413-416	http://identifiers.org/oryzabase.gene/12401	denotes	map
T8	769-774	http://identifiers.org/oryzabase.gene/2975	denotes	OSH15
T9	885-890	http://identifiers.org/oryzabase.gene/2975	denotes	OSH15
T10	1006-1011	http://identifiers.org/oryzabase.gene/11165	denotes	small
T11	1069-1074	http://identifiers.org/oryzabase.gene/2975	denotes	OSH15
T51922	53-58	http://identifiers.org/ricegap/LOC_Os07g03770	denotes	OSH15
T93832	110-115	http://identifiers.org/ricegap/LOC_Os03g40540	denotes	dwarf
T32428	147-152	http://identifiers.org/ricegap/LOC_Os07g03770	denotes	OSH15
T26503	324-329	http://identifiers.org/ricegap/LOC_Os07g03770	denotes	OSH15
T31208	413-416	http://identifiers.org/ricegap/LOC_Os08g40620	denotes	map
T87686	769-774	http://identifiers.org/ricegap/LOC_Os07g03770	denotes	OSH15
T43239	885-890	http://identifiers.org/ricegap/LOC_Os07g03770	denotes	OSH15
T10731	1006-1011	http://identifiers.org/ricegap/LOC_Os02g34850	denotes	small
T44768	1069-1074	http://identifiers.org/ricegap/LOC_Os07g03770	denotes	OSH15
T4343	1207-1222	http://identifiers.org/ricegap/LOC_Os12g29330	denotes	apical meristem
T50035	1207-1222	http://identifiers.org/ricegap/LOC_Os11g03370	denotes	apical meristem
T12	1207-1222	http://identifiers.org/ricegap/LOC_Os06g23650	denotes	apical meristem
T13	1207-1222	http://identifiers.org/ricegap/LOC_Os06g04090	denotes	apical meristem
T75447	53-58	http://identifiers.org/rapdb.locus/Os07g0129700	denotes	OSH15
T3190	110-115	http://identifiers.org/rapdb.locus/Os03g0602300	denotes	dwarf
T16362	147-152	http://identifiers.org/rapdb.locus/Os07g0129700	denotes	OSH15
T70717	324-329	http://identifiers.org/rapdb.locus/Os07g0129700	denotes	OSH15
T29320	413-416	http://identifiers.org/rapdb.locus/Os08g0518100	denotes	map
T93788	769-774	http://identifiers.org/rapdb.locus/Os07g0129700	denotes	OSH15
T30449	885-890	http://identifiers.org/rapdb.locus/Os07g0129700	denotes	OSH15
T90828	1006-1011	http://identifiers.org/rapdb.locus/Os02g0554000	denotes	small
T60152	1069-1074	http://identifiers.org/rapdb.locus/Os07g0129700	denotes	OSH15
T21351	1207-1222	http://identifiers.org/rapdb.locus/Os12g0477400	denotes	apical meristem
T81860	1207-1222	http://identifiers.org/rapdb.locus/Os11g0127600	denotes	apical meristem
T45348	1207-1222	http://identifiers.org/rapdb.locus/Os06g0344900	denotes	apical meristem
T22223	1207-1222	http://identifiers.org/rapdb.locus/Os06g0131700	denotes	apical meristem
T42816	53-58	http://identifiers.org/uniprot/O80416	denotes	OSH15
T11916	147-152	http://identifiers.org/uniprot/O80416	denotes	OSH15
T17067	324-329	http://identifiers.org/uniprot/O80416	denotes	OSH15
T33155	769-774	http://identifiers.org/uniprot/O80416	denotes	OSH15
T78884	885-890	http://identifiers.org/uniprot/O80416	denotes	OSH15
T34546	1069-1074	http://identifiers.org/uniprot/O80416	denotes	OSH15
M_0	196-230	hunflair:NA:Gene	denotes	knotted1-type homeobox gene family
M_1	154-166	hunflair:NA:Species	denotes	Oryza sativa
M_2	196-209	hunflair:NA:Gene	denotes	knotted1-type
M_3	1150-1163	hunflair:NA:Gene	denotes	knotted1-type
M_4	34-38	hunflair:NA:Species	denotes	rice
M_5	128-132	hunflair:NA:Species	denotes	rice
M_6	380-384	hunflair:NA:Species	denotes	rice
M_7	1097-1101	hunflair:NA:Species	denotes	rice
M_8	53-58	hunflair:NA:Gene	denotes	OSH15
M_9	147-152	hunflair:NA:Gene	denotes	OSH15
M_10	324-329	hunflair:NA:Gene	denotes	OSH15
M_11	769-774	hunflair:NA:Gene	denotes	OSH15
M_12	885-890	hunflair:NA:Gene	denotes	OSH15
M_13	1069-1074	hunflair:NA:Gene	denotes	OSH15
M_14	154-175	hunflair:NA:Gene	denotes	Oryza sativa homeobox

Oryza_sentences

Id	Subject	Object	Predicate	Lexical cue
T1	0-123	Sentence	denotes	Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
T2	124-231	Sentence	denotes	The rice homeobox gene OSH15 (Oryza sativa homeobox) is a member of the knotted1-type homeobox gene family.
T3	232-385	Sentence	denotes	We report here on the identification and characterization of a loss-of-function mutation in OSH15 from a library of retrotransposon-tagged lines of rice.
T4	386-535	Sentence	denotes	Based on the phenotype and map position, we have identified three independent deletion alleles of the locus among conventional morphological mutants.
T5	536-651	Sentence	denotes	All of these recessive mutations, which are considered to be null alleles, exhibit defects in internode elongation.
T6	652-891	Sentence	denotes	Introduction of a 14 kbp genomic DNA fragment that includes all exons, introns and 5'- and 3'- flanking sequences of OSH15 complemented the defects in internode elongation, confirming that they were caused by the loss-of-function of OSH15.
T7	892-1029	Sentence	denotes	Internodes of the mutants had abnormal-shaped epidermal and hypodermal cells and showed an unusual arrangement of small vascular bundles.
T8	1030-1113	Sentence	denotes	These mutations demonstrate a role for OSH15 in the development of rice internodes.
T9	1114-1273	Sentence	denotes	This is the first evidence that the knotted1-type homeobox genes have roles other than shoot apical meristem formation and/or maintenance in plant development.
T1	0-123	Sentence	denotes	Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
T2	124-231	Sentence	denotes	The rice homeobox gene OSH15 (Oryza sativa homeobox) is a member of the knotted1-type homeobox gene family.
T3	232-385	Sentence	denotes	We report here on the identification and characterization of a loss-of-function mutation in OSH15 from a library of retrotransposon-tagged lines of rice.
T4	386-535	Sentence	denotes	Based on the phenotype and map position, we have identified three independent deletion alleles of the locus among conventional morphological mutants.
T5	536-651	Sentence	denotes	All of these recessive mutations, which are considered to be null alleles, exhibit defects in internode elongation.
T6	652-891	Sentence	denotes	Introduction of a 14 kbp genomic DNA fragment that includes all exons, introns and 5'- and 3'- flanking sequences of OSH15 complemented the defects in internode elongation, confirming that they were caused by the loss-of-function of OSH15.
T7	892-1029	Sentence	denotes	Internodes of the mutants had abnormal-shaped epidermal and hypodermal cells and showed an unusual arrangement of small vascular bundles.
T8	1030-1113	Sentence	denotes	These mutations demonstrate a role for OSH15 in the development of rice internodes.
T9	1114-1273	Sentence	denotes	This is the first evidence that the knotted1-type homeobox genes have roles other than shoot apical meristem formation and/or maintenance in plant development.
T1	0-123	Sentence	denotes	Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
T2	124-231	Sentence	denotes	The rice homeobox gene OSH15 (Oryza sativa homeobox) is a member of the knotted1-type homeobox gene family.
T3	232-385	Sentence	denotes	We report here on the identification and characterization of a loss-of-function mutation in OSH15 from a library of retrotransposon-tagged lines of rice.
T4	386-535	Sentence	denotes	Based on the phenotype and map position, we have identified three independent deletion alleles of the locus among conventional morphological mutants.
T5	536-651	Sentence	denotes	All of these recessive mutations, which are considered to be null alleles, exhibit defects in internode elongation.
T6	652-891	Sentence	denotes	Introduction of a 14 kbp genomic DNA fragment that includes all exons, introns and 5'- and 3'- flanking sequences of OSH15 complemented the defects in internode elongation, confirming that they were caused by the loss-of-function of OSH15.
T7	892-1029	Sentence	denotes	Internodes of the mutants had abnormal-shaped epidermal and hypodermal cells and showed an unusual arrangement of small vascular bundles.
T8	1030-1113	Sentence	denotes	These mutations demonstrate a role for OSH15 in the development of rice internodes.
T9	1114-1273	Sentence	denotes	This is the first evidence that the knotted1-type homeobox genes have roles other than shoot apical meristem formation and/or maintenance in plant development.