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PMC:88885 / 8964-9586 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T2267 0-2 IN denotes In
T2268 139-148 VBN denotes performed
T2269 3-8 NN denotes order
T2270 9-11 TO denotes to
T2271 12-21 VB denotes determine
T2272 22-25 DT denotes the
T2273 26-34 NN denotes sequence
T2274 35-37 IN denotes of
T2275 38-41 DT denotes the
T2276 49-59 NN denotes transcript
T2277 42-48 JJ denotes entire
T2278 59-61 , denotes ,
T2279 61-63 NN denotes RT
T2280 64-67 NN denotes PCR
T2281 63-64 HYPH denotes -
T2282 68-73 VBG denotes using
T2283 74-81 NNS denotes primers
T2284 82-84 IN denotes in
T2285 85-90 NNS denotes exons
T2286 91-93 CD denotes 10
T2287 94-97 CC denotes and
T2288 98-100 CD denotes 11
T2289 101-107 VBN denotes paired
T2290 108-112 IN denotes with
T2291 113-114 DT denotes a
T2292 115-121 NN denotes primer
T2293 122-124 IN denotes in
T2294 125-131 NN denotes intron
T2295 132-134 CD denotes 12
T2296 135-138 VBD denotes was
T2297 149-154 VBG denotes using
T2298 155-159 NN denotes BALB
T2299 160-161 NN denotes c
T2300 159-160 HYPH denotes /
T2301 162-167 NN denotes mouse
T2302 168-173 NN denotes brain
T2303 180-183 NN denotes RNA
T2304 174-179 JJ denotes total
T2305 184-187 CC denotes and
T2306 188-191 DT denotes the
T2307 202-210 NNS denotes products
T2308 192-201 VBG denotes resulting
T2309 211-220 VBN denotes sequenced
T2310 220-221 . denotes .
T2311 221-343 sentence denotes These products show that the larger transcript is due to an alternative splice event that results in an expanded exon 13.
T2312 222-227 DT denotes These
T2313 228-236 NNS denotes products
T2314 237-241 VBP denotes show
T2315 242-246 IN denotes that
T2316 269-271 VBZ denotes is
T2317 247-250 DT denotes the
T2318 258-268 NN denotes transcript
T2319 251-257 JJR denotes larger
T2320 272-275 IN denotes due
T2321 276-278 IN denotes to
T2322 279-281 DT denotes an
T2323 301-306 NN denotes event
T2324 282-293 JJ denotes alternative
T2325 294-300 NN denotes splice
T2326 307-311 WDT denotes that
T2327 312-319 VBZ denotes results
T2328 320-322 IN denotes in
T2329 323-325 DT denotes an
T2330 335-339 NN denotes exon
T2331 326-334 VBN denotes expanded
T2332 340-342 CD denotes 13
T2333 342-343 . denotes .
T2334 343-465 sentence denotes Specifically, exon 12 splices at bp 436 of intron 12, creating a large 1614 bp exon 13 that splices correctly to exon 14.
T2335 344-356 RB denotes Specifically
T2336 366-373 VBZ denotes splices
T2337 356-358 , denotes ,
T2338 358-362 NN denotes exon
T2339 363-365 CD denotes 12
T2340 374-376 IN denotes at
T2341 377-379 NN denotes bp
T2342 380-383 CD denotes 436
T2343 384-386 IN denotes of
T2344 387-393 NN denotes intron
T2345 394-396 CD denotes 12
T2346 396-398 , denotes ,
T2347 398-406 VBG denotes creating
T2348 407-408 DT denotes a
T2349 423-427 NN denotes exon
T2350 409-414 JJ denotes large
T2351 415-419 CD denotes 1614
T2352 420-422 NN denotes bp
T2353 428-430 CD denotes 13
T2354 431-435 WDT denotes that
T2355 436-443 VBZ denotes splices
T2356 444-453 RB denotes correctly
T2357 454-456 IN denotes to
T2358 457-461 NN denotes exon
T2359 462-464 CD denotes 14
T2360 464-465 . denotes .
T2361 465-622 sentence denotes The open reading frame of this alternatively spliced transcript is 611 amino acids, 28 amino acids longer than the message encoded by the 2.4 kb transcript.
T2362 466-469 DT denotes The
T2363 483-488 NN denotes frame
T2364 470-474 JJ denotes open
T2365 475-482 NN denotes reading
T2366 530-532 VBZ denotes is
T2367 489-491 IN denotes of
T2368 492-496 DT denotes this
T2369 519-529 NN denotes transcript
T2370 497-510 RB denotes alternatively
T2371 511-518 VBN denotes spliced
T2372 533-536 CD denotes 611
T2373 543-548 NNS denotes acids
T2374 537-542 NN denotes amino
T2375 548-550 , denotes ,
T2376 550-552 CD denotes 28
T2377 559-564 NNS denotes acids
T2378 553-558 JJ denotes amino
T2379 565-571 JJR denotes longer
T2380 572-576 IN denotes than
T2381 577-580 DT denotes the
T2382 581-588 NN denotes message
T2383 589-596 VBN denotes encoded
T2384 597-599 IN denotes by
T2385 600-603 DT denotes the
T2386 611-621 NN denotes transcript
T2387 604-607 CD denotes 2.4
T2388 608-610 NN denotes kb
T2389 621-622 . denotes .
R1350 T2267 T2268 prep In,performed
R1351 T2269 T2267 pobj order,In
R1352 T2270 T2271 aux to,determine
R1353 T2271 T2269 acl determine,order
R1354 T2272 T2273 det the,sequence
R1355 T2273 T2271 dobj sequence,determine
R1356 T2274 T2273 prep of,sequence
R1357 T2275 T2276 det the,transcript
R1358 T2276 T2274 pobj transcript,of
R1359 T2277 T2276 amod entire,transcript
R1360 T2278 T2268 punct ", ",performed
R1361 T2279 T2280 compound RT,PCR
R1362 T2280 T2268 nsubjpass PCR,performed
R1363 T2281 T2280 punct -,PCR
R1364 T2282 T2280 acl using,PCR
R1365 T2283 T2282 dobj primers,using
R1366 T2284 T2283 prep in,primers
R1367 T2285 T2286 nmod exons,10
R1368 T2286 T2284 pobj 10,in
R1369 T2287 T2286 cc and,10
R1370 T2288 T2286 conj 11,10
R1371 T2289 T2283 acl paired,primers
R1372 T2290 T2289 prep with,paired
R1373 T2291 T2292 det a,primer
R1374 T2292 T2290 pobj primer,with
R1375 T2293 T2292 prep in,primer
R1376 T2294 T2293 pobj intron,in
R1377 T2295 T2294 nummod 12,intron
R1378 T2296 T2268 auxpass was,performed
R1379 T2297 T2268 advcl using,performed
R1380 T2298 T2299 nmod BALB,c
R1381 T2299 T2301 nmod c,mouse
R1382 T2300 T2299 punct /,c
R1383 T2301 T2302 nmod mouse,brain
R1384 T2302 T2303 nmod brain,RNA
R1385 T2303 T2297 dobj RNA,using
R1386 T2304 T2303 amod total,RNA
R1387 T2305 T2268 cc and,performed
R1388 T2306 T2307 det the,products
R1389 T2307 T2309 nsubj products,sequenced
R1390 T2308 T2307 amod resulting,products
R1391 T2309 T2268 conj sequenced,performed
R1392 T2310 T2268 punct .,performed
R1393 T2312 T2313 det These,products
R1394 T2313 T2314 nsubj products,show
R1395 T2315 T2316 mark that,is
R1396 T2316 T2314 ccomp is,show
R1397 T2317 T2318 det the,transcript
R1398 T2318 T2316 nsubj transcript,is
R1399 T2319 T2318 amod larger,transcript
R1400 T2320 T2316 prep due,is
R1401 T2321 T2320 pcomp to,due
R1402 T2322 T2323 det an,event
R1403 T2323 T2320 pobj event,due
R1404 T2324 T2323 amod alternative,event
R1405 T2325 T2323 compound splice,event
R1406 T2326 T2327 dep that,results
R1407 T2327 T2323 relcl results,event
R1408 T2328 T2327 prep in,results
R1409 T2329 T2330 det an,exon
R1410 T2330 T2328 pobj exon,in
R1411 T2331 T2330 amod expanded,exon
R1412 T2332 T2330 nummod 13,exon
R1413 T2333 T2314 punct .,show
R1414 T2335 T2336 advmod Specifically,splices
R1415 T2337 T2336 punct ", ",splices
R1416 T2338 T2336 nsubj exon,splices
R1417 T2339 T2338 nummod 12,exon
R1418 T2340 T2336 prep at,splices
R1419 T2341 T2340 pobj bp,at
R1420 T2342 T2341 nummod 436,bp
R1421 T2343 T2341 prep of,bp
R1422 T2344 T2343 pobj intron,of
R1423 T2345 T2344 nummod 12,intron
R1424 T2346 T2336 punct ", ",splices
R1425 T2347 T2336 advcl creating,splices
R1426 T2348 T2349 det a,exon
R1427 T2349 T2347 dobj exon,creating
R1428 T2350 T2349 amod large,exon
R1429 T2351 T2352 nummod 1614,bp
R1430 T2352 T2349 compound bp,exon
R1431 T2353 T2349 nummod 13,exon
R1432 T2354 T2355 dep that,splices
R1433 T2355 T2349 relcl splices,exon
R1434 T2356 T2355 advmod correctly,splices
R1435 T2357 T2355 prep to,splices
R1436 T2358 T2357 pobj exon,to
R1437 T2359 T2358 nummod 14,exon
R1438 T2360 T2336 punct .,splices
R1439 T2362 T2363 det The,frame
R1440 T2363 T2366 nsubj frame,is
R1441 T2364 T2363 amod open,frame
R1442 T2365 T2363 compound reading,frame
R1443 T2367 T2363 prep of,frame
R1444 T2368 T2369 det this,transcript
R1445 T2369 T2367 pobj transcript,of
R1446 T2370 T2371 advmod alternatively,spliced
R1447 T2371 T2369 amod spliced,transcript
R1448 T2372 T2373 nummod 611,acids
R1449 T2373 T2366 attr acids,is
R1450 T2374 T2373 compound amino,acids
R1451 T2375 T2373 punct ", ",acids
R1452 T2376 T2377 nummod 28,acids
R1453 T2377 T2379 npadvmod acids,longer
R1454 T2378 T2377 amod amino,acids
R1455 T2379 T2373 amod longer,acids
R1456 T2380 T2379 prep than,longer
R1457 T2381 T2382 det the,message
R1458 T2382 T2380 pobj message,than
R1459 T2383 T2382 acl encoded,message
R1460 T2384 T2383 agent by,encoded
R1461 T2385 T2386 det the,transcript
R1462 T2386 T2384 pobj transcript,by
R1463 T2387 T2388 nummod 2.4,kb
R1464 T2388 T2386 compound kb,transcript
R1465 T2389 T2366 punct .,is

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2038 49-59 SO:0000673 denotes transcript
T2039 74-81 SO:0000112 denotes primers
T2040 85-90 SO:0000147 denotes exons
T2041 115-121 SO:0000112 denotes primer
T2042 125-131 SO:0000188 denotes intron
T2043 162-167 NCBITaxon:10088 denotes mouse
T2044 168-173 UBERON:0000955 denotes brain
T2045 258-268 SO:0000673 denotes transcript
T2046 282-300 GO:0000380 denotes alternative splice
T2047 335-339 SO:0000147 denotes exon
T2048 358-362 SO:0000147 denotes exon
T2049 366-373 GO:0008380 denotes splices
T2050 377-379 SO:0000028 denotes bp
T2051 387-393 SO:0000188 denotes intron
T2052 420-422 SO:0000028 denotes bp
T2053 423-427 SO:0000147 denotes exon
T2054 436-443 GO:0008380 denotes splices
T2055 457-461 SO:0000147 denotes exon
T2056 470-488 SO:0000236 denotes open reading frame
T2057 497-518 GO:0000380 denotes alternatively spliced
T2058 497-529 SO:1001187 denotes alternatively spliced transcript
T2059 581-588 CHEBI:33695 denotes message
T2060 611-621 SO:0000673 denotes transcript

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2756 26-34 SO_EXT:biological_sequence denotes sequence
T2757 49-59 SO_EXT:0000673 denotes transcript
T2758 61-63 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T2759 74-81 SO_EXT:0000112 denotes primers
T2760 85-90 SO_EXT:0000147 denotes exons
T2761 115-121 SO_EXT:0000112 denotes primer
T2762 125-131 SO_EXT:0000188 denotes intron
T2763 162-167 NCBITaxon:10088 denotes mouse
T2764 168-173 UBERON:0000955 denotes brain
T2765 180-183 CHEBI_SO_EXT:RNA denotes RNA
T2766 258-268 SO_EXT:0000673 denotes transcript
T2767 282-300 GO:0000380 denotes alternative splice
T2768 335-339 SO_EXT:0000147 denotes exon
T2769 358-362 SO_EXT:0000147 denotes exon
T2770 366-373 GO:0008380 denotes splices
T2771 377-379 SO_EXT:0000028 denotes bp
T2772 387-393 SO_EXT:0000188 denotes intron
T2773 420-422 SO_EXT:0000028 denotes bp
T2774 423-427 SO_EXT:0000147 denotes exon
T2775 436-443 GO:0008380 denotes splices
T2776 457-461 SO_EXT:0000147 denotes exon
T2777 470-488 SO_EXT:0000236 denotes open reading frame
T2778 497-518 GO:0000380 denotes alternatively spliced
T2779 497-529 SO_EXT:1001187 denotes alternatively spliced transcript
T2780 537-548 CHEBI_SO_EXT:amino_acid denotes amino acids
T2781 553-564 CHEBI_SO_EXT:amino_acid denotes amino acids
T2782 581-588 CHEBI_SO_EXT:mRNA denotes message
T2783 581-588 CHEBI:33695 denotes message
T2784 589-596 SO_EXT:sequence_coding_function denotes encoded
T2785 609-610 CHEBI_SO_EXT:base denotes b
T2786 611-621 SO_EXT:0000673 denotes transcript