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    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"950","span":{"begin":23,"end":38},"obj":"Disease"},{"id":"951","span":{"begin":42,"end":50},"obj":"Disease"},{"id":"982","span":{"begin":460,"end":471},"obj":"Species"},{"id":"983","span":{"begin":539,"end":548},"obj":"Species"},{"id":"984","span":{"begin":61,"end":72},"obj":"Chemical"},{"id":"985","span":{"begin":74,"end":76},"obj":"Chemical"},{"id":"986","span":{"begin":81,"end":97},"obj":"Chemical"},{"id":"987","span":{"begin":378,"end":380},"obj":"Chemical"},{"id":"988","span":{"begin":454,"end":456},"obj":"Chemical"},{"id":"989","span":{"begin":582,"end":600},"obj":"Chemical"},{"id":"990","span":{"begin":602,"end":605},"obj":"Chemical"},{"id":"991","span":{"begin":626,"end":637},"obj":"Chemical"},{"id":"992","span":{"begin":745,"end":748},"obj":"Chemical"},{"id":"993","span":{"begin":848,"end":850},"obj":"Chemical"},{"id":"994","span":{"begin":854,"end":857},"obj":"Chemical"},{"id":"995","span":{"begin":1016,"end":1019},"obj":"Chemical"},{"id":"996","span":{"begin":1121,"end":1132},"obj":"Chemical"},{"id":"997","span":{"begin":141,"end":148},"obj":"Disease"},{"id":"998","span":{"begin":153,"end":163},"obj":"Disease"},{"id":"999","span":{"begin":204,"end":223},"obj":"Disease"},{"id":"1000","span":{"begin":235,"end":254},"obj":"Disease"},{"id":"1001","span":{"begin":259,"end":279},"obj":"Disease"},{"id":"1002","span":{"begin":316,"end":328},"obj":"Disease"},{"id":"1003","span":{"begin":482,"end":496},"obj":"Disease"},{"id":"1004","span":{"begin":553,"end":570},"obj":"Disease"},{"id":"1005","span":{"begin":660,"end":668},"obj":"Disease"},{"id":"1006","span":{"begin":757,"end":765},"obj":"Disease"},{"id":"1007","span":{"begin":880,"end":908},"obj":"Disease"},{"id":"1008","span":{"begin":990,"end":999},"obj":"Disease"},{"id":"1009","span":{"begin":1036,"end":1050},"obj":"Disease"},{"id":"1010","span":{"begin":1104,"end":1113},"obj":"Disease"},{"id":"1011","span":{"begin":1145,"end":1159},"obj":"Disease"},{"id":"1028","span":{"begin":1806,"end":1810},"obj":"Gene"},{"id":"1029","span":{"begin":1992,"end":1996},"obj":"Gene"},{"id":"1030","span":{"begin":2078,"end":2086},"obj":"Species"},{"id":"1031","span":{"begin":1931,"end":1940},"obj":"Chemical"},{"id":"1032","span":{"begin":2119,"end":2128},"obj":"Chemical"},{"id":"1033","span":{"begin":1248,"end":1256},"obj":"Disease"},{"id":"1034","span":{"begin":1475,"end":1487},"obj":"Disease"},{"id":"1035","span":{"begin":1626,"end":1635},"obj":"Disease"},{"id":"1036","span":{"begin":1829,"end":1838},"obj":"Disease"},{"id":"1037","span":{"begin":1953,"end":1961},"obj":"Disease"},{"id":"1038","span":{"begin":2041,"end":2050},"obj":"Disease"},{"id":"1039","span":{"begin":2092,"end":2100},"obj":"Disease"},{"id":"1040","span":{"begin":2163,"end":2175},"obj":"Disease"},{"id":"1041","span":{"begin":2437,"end":2445},"obj":"Disease"},{"id":"1042","span":{"begin":2463,"end":2472},"obj":"Disease"},{"id":"1043","span":{"begin":2734,"end":2749},"obj":"Disease"}],"attributes":[{"id":"A950","pred":"tao:has_database_id","subj":"950","obj":"MESH:D005955"},{"id":"A951","pred":"tao:has_database_id","subj":"951","obj":"MESH:C000657245"},{"id":"A982","pred":"tao:has_database_id","subj":"982","obj":"Tax:37124"},{"id":"A983","pred":"tao:has_database_id","subj":"983","obj":"Tax:11309"},{"id":"A984","pred":"tao:has_database_id","subj":"984","obj":"MESH:D002738"},{"id":"A985","pred":"tao:has_database_id","subj":"985","obj":"MESH:D002738"},{"id":"A986","pred":"tao:has_database_id","subj":"986","obj":"MESH:C001920"},{"id":"A987","pred":"tao:has_database_id","subj":"987","obj":"MESH:D002738"},{"id":"A988","pred":"tao:has_database_id","subj":"988","obj":"MESH:D002738"},{"id":"A989","pred":"tao:has_database_id","subj":"989","obj":"MESH:D006886"},{"id":"A990","pred":"tao:has_database_id","subj":"990","obj":"MESH:D006886"},{"id":"A991","pred":"tao:has_database_id","subj":"991","obj":"MESH:D002738"},{"id":"A992","pred":"tao:has_database_id","subj":"992","obj":"MESH:D006886"},{"id":"A993","pred":"tao:has_database_id","subj":"993","obj":"MESH:D002738"},{"id":"A994","pred":"tao:has_database_id","subj":"994","obj":"MESH:D006886"},{"id":"A995","pred":"tao:has_database_id","subj":"995","obj":"MESH:D006886"},{"id":"A996","pred":"tao:has_database_id","subj":"996","obj":"MESH:D002738"},{"id":"A997","pred":"tao:has_database_id","subj":"997","obj":"MESH:D008288"},{"id":"A998","pred":"tao:has_database_id","subj":"998","obj":"MESH:D000562"},{"id":"A999","pred":"tao:has_database_id","subj":"999","obj":"MESH:D001327"},{"id":"A1000","pred":"tao:has_database_id","subj":"1000","obj":"MESH:D008180"},{"id":"A1001","pred":"tao:has_database_id","subj":"1001","obj":"MESH:D001172"},{"id":"A1002","pred":"tao:has_database_id","subj":"1002","obj":"MESH:D007249"},{"id":"A1003","pred":"tao:has_database_id","subj":"1003","obj":"MESH:D006526"},{"id":"A1004","pred":"tao:has_database_id","subj":"1004","obj":"MESH:D003715"},{"id":"A1005","pred":"tao:has_database_id","subj":"1005","obj":"MESH:C000657245"},{"id":"A1006","pred":"tao:has_database_id","subj":"1006","obj":"MESH:C000657245"},{"id":"A1007","pred":"tao:has_database_id","subj":"1007","obj":"MESH:D006461"},{"id":"A1008","pred":"tao:has_database_id","subj":"1008","obj":"MESH:D006461"},{"id":"A1009","pred":"tao:has_database_id","subj":"1009","obj":"MESH:D005955"},{"id":"A1010","pred":"tao:has_database_id","subj":"1010","obj":"MESH:D006461"},{"id":"A1011","pred":"tao:has_database_id","subj":"1011","obj":"MESH:D005955"},{"id":"A1028","pred":"tao:has_database_id","subj":"1028","obj":"Gene:2475"},{"id":"A1029","pred":"tao:has_database_id","subj":"1029","obj":"Gene:2475"},{"id":"A1030","pred":"tao:has_database_id","subj":"1030","obj":"Tax:9606"},{"id":"A1031","pred":"tao:has_database_id","subj":"1031","obj":"MESH:D008687"},{"id":"A1032","pred":"tao:has_database_id","subj":"1032","obj":"MESH:D008687"},{"id":"A1033","pred":"tao:has_database_id","subj":"1033","obj":"MESH:C000657245"},{"id":"A1034","pred":"tao:has_database_id","subj":"1034","obj":"MESH:D007249"},{"id":"A1035","pred":"tao:has_database_id","subj":"1035","obj":"MESH:D007239"},{"id":"A1036","pred":"tao:has_database_id","subj":"1036","obj":"MESH:D007239"},{"id":"A1037","pred":"tao:has_database_id","subj":"1037","obj":"MESH:D003920"},{"id":"A1038","pred":"tao:has_database_id","subj":"1038","obj":"MESH:D003643"},{"id":"A1039","pred":"tao:has_database_id","subj":"1039","obj":"MESH:C000657245"},{"id":"A1040","pred":"tao:has_database_id","subj":"1040","obj":"MESH:D007249"},{"id":"A1041","pred":"tao:has_database_id","subj":"1041","obj":"MESH:C000657245"},{"id":"A1042","pred":"tao:has_database_id","subj":"1042","obj":"MESH:D003643"},{"id":"A1043","pred":"tao:has_database_id","subj":"1043","obj":"MESH:D005955"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Potential influence of G6PD deficiency on COVID-19 therapies\nChloroquine (CQ), a 4-aminoquinoline drug, is commonly used in the treatment of malaria and amoebiasis [122,123]. It is also used for treating autoimmune diseases, including lupus erythematosus and rheumatoid arthritis, due to its capacity for modulating inflammation and the immune response [124,125]. The effect of CQ on certain viruses is inconclusive. A positive response is observed with CQ in chikungunya, HIV, and HCV infections [126–129], whereas it is not effective in influenza and dengue infections [126,130]. Hydroxychloroquine (HCQ) is a derivative of chloroquine and its treatment for COVID-19 is currently being evaluated in clinical trials [131]. The potential use of HCQ against COVID-19 may raise safety issues in certain populations [132]. Recent reports suggest that CQ or HCQ is possibly linked to hemolysis in G6PD deficiency [133–135]. However, two large retrospective studies indicated that no episode of hemolysis was found after HCQ treatment among G6PD-deficient individuals [136,137]. Hence, the claim that oxidant hemolysis due to chloroquine exposure in G6PD-deficient individuals remains unsettled [138].\nDespite the efforts of developing vaccines against COVID-19, studies show that the elderly are less responsive to immune stimulation. During aging, the depletion of naïve T cells and B cells weakens the immune defense against invading pathogens. Moreover, chronic and low-grade inflammation in the elderly, known as inflammaging, leads to a reduced ability to external stimulation. These events result in an impaired response to infection and dampen the reaction to vaccines [139]. Nevertheless, some anti-aging therapies show promising results related to enhancing the anti-viral response in the elderly. An mTOR inhibitor reduces infection, improves vaccination responses, and enhances the anti-viral response in the elderly [140]. Metformin is a common diabetic drug that indirectly inhibits mTOR and extends life span in animals [141]. The mortality rate drops in hospitalized patients with COVID-19 who have received metformin [142,143]. Senolytic drugs reduce inflammation and selectively remove senescent cells during aging [144]. These anti-aging compounds can exert their function in promoting healthspan by maintaining redox homeostasis and alleviating oxidative stress [145–147]. These compounds administered to the elderly with COVID-19 may reduce their mortality and improve recovery [148–151]. This opens the possibility of reducing the signs of aging or immunosenescence in the elderly population with drugs such as calorie restriction mimetics and senolytics before vaccination [152,153]. In particular, the elderly with G6PD deficiency may benefit from these treatments through boosting their antioxidative defense and immune responses."}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T194","span":{"begin":0,"end":60},"obj":"Sentence"},{"id":"T195","span":{"begin":61,"end":174},"obj":"Sentence"},{"id":"T196","span":{"begin":175,"end":363},"obj":"Sentence"},{"id":"T197","span":{"begin":364,"end":416},"obj":"Sentence"},{"id":"T198","span":{"begin":417,"end":581},"obj":"Sentence"},{"id":"T199","span":{"begin":582,"end":723},"obj":"Sentence"},{"id":"T200","span":{"begin":724,"end":819},"obj":"Sentence"},{"id":"T201","span":{"begin":820,"end":919},"obj":"Sentence"},{"id":"T202","span":{"begin":920,"end":1073},"obj":"Sentence"},{"id":"T203","span":{"begin":1074,"end":1196},"obj":"Sentence"},{"id":"T204","span":{"begin":1197,"end":1330},"obj":"Sentence"},{"id":"T205","span":{"begin":1331,"end":1442},"obj":"Sentence"},{"id":"T206","span":{"begin":1443,"end":1578},"obj":"Sentence"},{"id":"T207","span":{"begin":1579,"end":1678},"obj":"Sentence"},{"id":"T208","span":{"begin":1679,"end":1802},"obj":"Sentence"},{"id":"T209","span":{"begin":1803,"end":1930},"obj":"Sentence"},{"id":"T210","span":{"begin":1931,"end":2036},"obj":"Sentence"},{"id":"T211","span":{"begin":2037,"end":2139},"obj":"Sentence"},{"id":"T212","span":{"begin":2140,"end":2234},"obj":"Sentence"},{"id":"T213","span":{"begin":2235,"end":2387},"obj":"Sentence"},{"id":"T214","span":{"begin":2388,"end":2504},"obj":"Sentence"},{"id":"T215","span":{"begin":2505,"end":2701},"obj":"Sentence"},{"id":"T216","span":{"begin":2702,"end":2850},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Potential influence of G6PD deficiency on COVID-19 therapies\nChloroquine (CQ), a 4-aminoquinoline drug, is commonly used in the treatment of malaria and amoebiasis [122,123]. It is also used for treating autoimmune diseases, including lupus erythematosus and rheumatoid arthritis, due to its capacity for modulating inflammation and the immune response [124,125]. The effect of CQ on certain viruses is inconclusive. A positive response is observed with CQ in chikungunya, HIV, and HCV infections [126–129], whereas it is not effective in influenza and dengue infections [126,130]. Hydroxychloroquine (HCQ) is a derivative of chloroquine and its treatment for COVID-19 is currently being evaluated in clinical trials [131]. The potential use of HCQ against COVID-19 may raise safety issues in certain populations [132]. Recent reports suggest that CQ or HCQ is possibly linked to hemolysis in G6PD deficiency [133–135]. However, two large retrospective studies indicated that no episode of hemolysis was found after HCQ treatment among G6PD-deficient individuals [136,137]. Hence, the claim that oxidant hemolysis due to chloroquine exposure in G6PD-deficient individuals remains unsettled [138].\nDespite the efforts of developing vaccines against COVID-19, studies show that the elderly are less responsive to immune stimulation. During aging, the depletion of naïve T cells and B cells weakens the immune defense against invading pathogens. Moreover, chronic and low-grade inflammation in the elderly, known as inflammaging, leads to a reduced ability to external stimulation. These events result in an impaired response to infection and dampen the reaction to vaccines [139]. Nevertheless, some anti-aging therapies show promising results related to enhancing the anti-viral response in the elderly. An mTOR inhibitor reduces infection, improves vaccination responses, and enhances the anti-viral response in the elderly [140]. Metformin is a common diabetic drug that indirectly inhibits mTOR and extends life span in animals [141]. The mortality rate drops in hospitalized patients with COVID-19 who have received metformin [142,143]. Senolytic drugs reduce inflammation and selectively remove senescent cells during aging [144]. These anti-aging compounds can exert their function in promoting healthspan by maintaining redox homeostasis and alleviating oxidative stress [145–147]. These compounds administered to the elderly with COVID-19 may reduce their mortality and improve recovery [148–151]. This opens the possibility of reducing the signs of aging or immunosenescence in the elderly population with drugs such as calorie restriction mimetics and senolytics before vaccination [152,153]. In particular, the elderly with G6PD deficiency may benefit from these treatments through boosting their antioxidative defense and immune responses."}

    LitCovid-PD-HP

    {"project":"LitCovid-PD-HP","denotations":[{"id":"T43","span":{"begin":204,"end":223},"obj":"Phenotype"},{"id":"T44","span":{"begin":259,"end":279},"obj":"Phenotype"},{"id":"T45","span":{"begin":979,"end":999},"obj":"Phenotype"},{"id":"T46","span":{"begin":2360,"end":2376},"obj":"Phenotype"}],"attributes":[{"id":"A43","pred":"hp_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/HP_0002960"},{"id":"A44","pred":"hp_id","subj":"T44","obj":"http://purl.obolibrary.org/obo/HP_0001370"},{"id":"A45","pred":"hp_id","subj":"T45","obj":"http://purl.obolibrary.org/obo/HP_0004802"},{"id":"A46","pred":"hp_id","subj":"T46","obj":"http://purl.obolibrary.org/obo/HP_0025464"}],"text":"Potential influence of G6PD deficiency on COVID-19 therapies\nChloroquine (CQ), a 4-aminoquinoline drug, is commonly used in the treatment of malaria and amoebiasis [122,123]. It is also used for treating autoimmune diseases, including lupus erythematosus and rheumatoid arthritis, due to its capacity for modulating inflammation and the immune response [124,125]. The effect of CQ on certain viruses is inconclusive. A positive response is observed with CQ in chikungunya, HIV, and HCV infections [126–129], whereas it is not effective in influenza and dengue infections [126,130]. Hydroxychloroquine (HCQ) is a derivative of chloroquine and its treatment for COVID-19 is currently being evaluated in clinical trials [131]. The potential use of HCQ against COVID-19 may raise safety issues in certain populations [132]. Recent reports suggest that CQ or HCQ is possibly linked to hemolysis in G6PD deficiency [133–135]. However, two large retrospective studies indicated that no episode of hemolysis was found after HCQ treatment among G6PD-deficient individuals [136,137]. Hence, the claim that oxidant hemolysis due to chloroquine exposure in G6PD-deficient individuals remains unsettled [138].\nDespite the efforts of developing vaccines against COVID-19, studies show that the elderly are less responsive to immune stimulation. During aging, the depletion of naïve T cells and B cells weakens the immune defense against invading pathogens. Moreover, chronic and low-grade inflammation in the elderly, known as inflammaging, leads to a reduced ability to external stimulation. These events result in an impaired response to infection and dampen the reaction to vaccines [139]. Nevertheless, some anti-aging therapies show promising results related to enhancing the anti-viral response in the elderly. An mTOR inhibitor reduces infection, improves vaccination responses, and enhances the anti-viral response in the elderly [140]. Metformin is a common diabetic drug that indirectly inhibits mTOR and extends life span in animals [141]. The mortality rate drops in hospitalized patients with COVID-19 who have received metformin [142,143]. Senolytic drugs reduce inflammation and selectively remove senescent cells during aging [144]. These anti-aging compounds can exert their function in promoting healthspan by maintaining redox homeostasis and alleviating oxidative stress [145–147]. These compounds administered to the elderly with COVID-19 may reduce their mortality and improve recovery [148–151]. This opens the possibility of reducing the signs of aging or immunosenescence in the elderly population with drugs such as calorie restriction mimetics and senolytics before vaccination [152,153]. In particular, the elderly with G6PD deficiency may benefit from these treatments through boosting their antioxidative defense and immune responses."}