PMC:7795856 / 25788-28012 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"465","span":{"begin":860,"end":863},"obj":"Gene"},{"id":"466","span":{"begin":875,"end":878},"obj":"Gene"},{"id":"467","span":{"begin":1050,"end":1053},"obj":"Gene"},{"id":"468","span":{"begin":1304,"end":1307},"obj":"Gene"},{"id":"469","span":{"begin":1573,"end":1576},"obj":"Gene"},{"id":"470","span":{"begin":1683,"end":1686},"obj":"Gene"},{"id":"471","span":{"begin":117,"end":128},"obj":"Chemical"},{"id":"472","span":{"begin":392,"end":408},"obj":"Chemical"},{"id":"473","span":{"begin":547,"end":557},"obj":"Chemical"},{"id":"474","span":{"begin":559,"end":563},"obj":"Chemical"},{"id":"475","span":{"begin":571,"end":579},"obj":"Chemical"},{"id":"476","span":{"begin":586,"end":590},"obj":"Chemical"},{"id":"477","span":{"begin":668,"end":672},"obj":"Chemical"},{"id":"478","span":{"begin":995,"end":1006},"obj":"Chemical"},{"id":"479","span":{"begin":1120,"end":1130},"obj":"Chemical"},{"id":"480","span":{"begin":1138,"end":1148},"obj":"Chemical"},{"id":"481","span":{"begin":1217,"end":1234},"obj":"Chemical"},{"id":"482","span":{"begin":1288,"end":1291},"obj":"Chemical"},{"id":"483","span":{"begin":1383,"end":1387},"obj":"Chemical"},{"id":"484","span":{"begin":1639,"end":1643},"obj":"Chemical"},{"id":"485","span":{"begin":1749,"end":1759},"obj":"Chemical"},{"id":"486","span":{"begin":1767,"end":1779},"obj":"Chemical"},{"id":"487","span":{"begin":1780,"end":1783},"obj":"Chemical"},{"id":"488","span":{"begin":1928,"end":1938},"obj":"Chemical"},{"id":"489","span":{"begin":2001,"end":2005},"obj":"Chemical"},{"id":"490","span":{"begin":2105,"end":2113},"obj":"Chemical"},{"id":"491","span":{"begin":2165,"end":2170},"obj":"Chemical"},{"id":"492","span":{"begin":138,"end":151},"obj":"Disease"},{"id":"493","span":{"begin":1818,"end":1840},"obj":"Disease"}],"attributes":[{"id":"A465","pred":"tao:has_database_id","subj":"465","obj":"Gene:134864"},{"id":"A466","pred":"tao:has_database_id","subj":"466","obj":"Gene:134864"},{"id":"A467","pred":"tao:has_database_id","subj":"467","obj":"Gene:134864"},{"id":"A468","pred":"tao:has_database_id","subj":"468","obj":"Gene:134864"},{"id":"A469","pred":"tao:has_database_id","subj":"469","obj":"Gene:134864"},{"id":"A470","pred":"tao:has_database_id","subj":"470","obj":"Gene:134864"},{"id":"A471","pred":"tao:has_database_id","subj":"471","obj":"MESH:D019343"},{"id":"A472","pred":"tao:has_database_id","subj":"472","obj":"MESH:D000645"},{"id":"A476","pred":"tao:has_database_id","subj":"476","obj":"MESH:D004492"},{"id":"A483","pred":"tao:has_database_id","subj":"483","obj":"MESH:D012965"},{"id":"A484","pred":"tao:has_database_id","subj":"484","obj":"MESH:D012965"},{"id":"A486","pred":"tao:has_database_id","subj":"486","obj":"MESH:D019856"},{"id":"A487","pred":"tao:has_database_id","subj":"487","obj":"MESH:D006851"},{"id":"A489","pred":"tao:has_database_id","subj":"489","obj":"MESH:D012965"},{"id":"A490","pred":"tao:has_database_id","subj":"490","obj":"MESH:D010455"},{"id":"A491","pred":"tao:has_database_id","subj":"491","obj":"MESH:D014867"},{"id":"A492","pred":"tao:has_database_id","subj":"492","obj":"MESH:C537005"},{"id":"A493","pred":"tao:has_database_id","subj":"493","obj":"MESH:C562593"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"4.3. Purification of PASylated Tα1\nBacteria were harvested by centrifugation and disrupted in the presence of 100 mM citric acid using an EmulsiFlex C5 cell homogenizer (Avestin, Mannheim, Germany). After centrifugation for 20 min (39,200× g) at 16 °C, the supernatant was filter-sterilized using a 0.45 µm syringe filter (Sartorius, Göttingen, Germany). The clear filtrate was adjusted with ammonium sulfate to 30% saturation, stirred for 30 min at RT, and centrifuged for 30 min (39,200× g) at RT. The precipitate was solubilized in subtractive AEX buffer (sAEX; 20 mM Tris/HCl, 1 mM EDTA, pH 8.5), filter-sterilized, and dialyzed twice against a 100-fold volume of sAEX buffer at 4 °C. Subsequent chromatography steps were performed on an ÄKTA Explorer 100 system (GE Healthcare, Freiburg, Germany) operated at a flow rate of 5 mL/min. The dialyzed sample (Tα1-PAS or PAS-Tα1) was first applied to a 5 mL TOYOPEARL NH2-750F column (Tosoh Bioscience, Griesheim, Germany) equilibrated with the sAEX buffer. The flow-through containing the PASylated Tα1 was collected and dialyzed twice against a 100-fold volume of the CEX buffer (20 mM Na-citrate, pH 3.0) at 4 °C. The protein solution was then applied to an 85 mL TOYOPEARL Sulfate-650F column (Tosoh Bioscience) equilibrated with the CEX buffer. PAS-Tα1 quantitatively bound to the column and the pure protein was eluted using a NaCl concentration gradient (0–250 mM over 2 column volumes). In the case of Tα1-PAS, the CEX flow-through fraction contained the N-terminally acetylated protein, whereas the non-acetylated Tα1-PAS stayed bound to the column and could again be eluted in a NaCl concentration gradient. The acetylated Tα1-PAS fraction from the flow-through was dialyzed twice against AEX buffer (20 mM ethanolamine/HCl, pH 10) and then applied to a 100 mL Fractogel® EMD TMAE (M)strong anion exchanger (Merck Millipore, Burlington, MA, USA) equilibrated with the AEX buffer. This time, highly pure acetylated Tα1-PAS was eluted using a NaCl concentration gradient (0–200 mM over 2 column volumes) in the AEX buffer. Both purified PASylated peptides were dialyzed 5 times against a 200-fold volume of water, lyophilized, and stored at −20 °C until further use."}

{"project":"LitCovid-sentences","denotations":[{"id":"T148","span":{"begin":0,"end":4},"obj":"Sentence"},{"id":"T149","span":{"begin":5,"end":34},"obj":"Sentence"},{"id":"T150","span":{"begin":35,"end":198},"obj":"Sentence"},{"id":"T151","span":{"begin":199,"end":354},"obj":"Sentence"},{"id":"T152","span":{"begin":355,"end":499},"obj":"Sentence"},{"id":"T153","span":{"begin":500,"end":688},"obj":"Sentence"},{"id":"T154","span":{"begin":689,"end":838},"obj":"Sentence"},{"id":"T155","span":{"begin":839,"end":1007},"obj":"Sentence"},{"id":"T156","span":{"begin":1008,"end":1166},"obj":"Sentence"},{"id":"T157","span":{"begin":1167,"end":1299},"obj":"Sentence"},{"id":"T158","span":{"begin":1300,"end":1444},"obj":"Sentence"},{"id":"T159","span":{"begin":1445,"end":1667},"obj":"Sentence"},{"id":"T160","span":{"begin":1668,"end":1939},"obj":"Sentence"},{"id":"T161","span":{"begin":1940,"end":2080},"obj":"Sentence"},{"id":"T162","span":{"begin":2081,"end":2224},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"4.3. Purification of PASylated Tα1\nBacteria were harvested by centrifugation and disrupted in the presence of 100 mM citric acid using an EmulsiFlex C5 cell homogenizer (Avestin, Mannheim, Germany). After centrifugation for 20 min (39,200× g) at 16 °C, the supernatant was filter-sterilized using a 0.45 µm syringe filter (Sartorius, Göttingen, Germany). The clear filtrate was adjusted with ammonium sulfate to 30% saturation, stirred for 30 min at RT, and centrifuged for 30 min (39,200× g) at RT. The precipitate was solubilized in subtractive AEX buffer (sAEX; 20 mM Tris/HCl, 1 mM EDTA, pH 8.5), filter-sterilized, and dialyzed twice against a 100-fold volume of sAEX buffer at 4 °C. Subsequent chromatography steps were performed on an ÄKTA Explorer 100 system (GE Healthcare, Freiburg, Germany) operated at a flow rate of 5 mL/min. The dialyzed sample (Tα1-PAS or PAS-Tα1) was first applied to a 5 mL TOYOPEARL NH2-750F column (Tosoh Bioscience, Griesheim, Germany) equilibrated with the sAEX buffer. The flow-through containing the PASylated Tα1 was collected and dialyzed twice against a 100-fold volume of the CEX buffer (20 mM Na-citrate, pH 3.0) at 4 °C. The protein solution was then applied to an 85 mL TOYOPEARL Sulfate-650F column (Tosoh Bioscience) equilibrated with the CEX buffer. PAS-Tα1 quantitatively bound to the column and the pure protein was eluted using a NaCl concentration gradient (0–250 mM over 2 column volumes). In the case of Tα1-PAS, the CEX flow-through fraction contained the N-terminally acetylated protein, whereas the non-acetylated Tα1-PAS stayed bound to the column and could again be eluted in a NaCl concentration gradient. The acetylated Tα1-PAS fraction from the flow-through was dialyzed twice against AEX buffer (20 mM ethanolamine/HCl, pH 10) and then applied to a 100 mL Fractogel® EMD TMAE (M)strong anion exchanger (Merck Millipore, Burlington, MA, USA) equilibrated with the AEX buffer. This time, highly pure acetylated Tα1-PAS was eluted using a NaCl concentration gradient (0–200 mM over 2 column volumes) in the AEX buffer. Both purified PASylated peptides were dialyzed 5 times against a 200-fold volume of water, lyophilized, and stored at −20 °C until further use."}