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PMC:7784829 / 12450-13639 JSONTXT

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LitCovid-sentences

Id Subject Object Predicate Lexical cue
T102 0-111 Sentence denotes The three-dimensional structure of the SARS-CoV spike protein and SARS-CoV-2 Spike protein RBD has been solved.
T103 112-251 Sentence denotes The PDB files of the SARS-CoV spike protein (6CRV) and the Spike protein RBD of the SARS-CoV-2 (6M0J) was downloaded from the PDB databank.
T104 252-397 Sentence denotes These structures were used to predict the ability of the binding of curcumin and its derivatives to the spike proteins of the two corona viruses.
T105 398-503 Sentence denotes Curcumin and 24 of its derivatives (Figure 1 and Supplementary Figure 2) were docked on to 6CRV and 6M0J.
T106 504-722 Sentence denotes Tables 2 and 3 gives the binding energies of curcumin and its derivatives with 6CRV (binding energies ranged from −10.98 to −5.12 kcal/mol) and with 6M0J (binding energies ranged −10.01 to −5.33 kcal/mol) respectively.
T107 723-1108 Sentence denotes Visual examination of the computationally docked optimal binding poses of curcumin and its derivatives on 6CRV and 6MOJ revealed the important role of various types of interactions viz. hydrogen bonding and hydrophobic interactions, including π–π stacking, π–cation, and π–σ interactions in the stability of the binding of the curcumin/derivatives to the spike protein (6CRV and 6M0J).
T108 1109-1189 Sentence denotes All compounds showed one or more hydrogen bonds with 6CRV and 6M0J except a few.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
297 77-82 Gene denotes Spike Gene:43740568
298 171-176 Gene denotes Spike Gene:43740568
299 1078-1083 Gene denotes spike Gene:43740568
300 48-53 Gene denotes spike Gene:43740568
301 356-361 Gene denotes spike Gene:43740568
302 142-147 Gene denotes spike Gene:43740568
303 39-47 Species denotes SARS-CoV Tax:694009
304 66-76 Species denotes SARS-CoV-2 Tax:2697049
305 133-141 Species denotes SARS-CoV Tax:694009
306 196-206 Species denotes SARS-CoV-2 Tax:2697049
307 320-328 Chemical denotes curcumin MESH:D003474
308 398-406 Chemical denotes Curcumin MESH:D003474
309 549-557 Chemical denotes curcumin MESH:D003474
310 797-805 Chemical denotes curcumin MESH:D003474
311 909-917 Chemical denotes hydrogen MESH:D006859
312 1050-1058 Chemical denotes curcumin MESH:D003474
313 1142-1150 Chemical denotes hydrogen MESH:D006859