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PMC:7784786 / 1932-18065 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
84 171-175 Gene denotes IL-6 Gene:3569
85 177-181 Gene denotes IL-1 Gene:3553
86 186-191 Gene denotes TNF-α Gene:7124
87 276-279 Gene denotes CRS Gene:7291
88 20-28 Species denotes patients Tax:9606
89 11-19 Disease denotes COVID-19 MESH:C000657245
98 288-291 Gene denotes CD6 Gene:923
99 387-390 Gene denotes CD6 Gene:923
100 503-506 Gene denotes CD6 Gene:923
101 629-632 Gene denotes CD6 Gene:923
102 810-815 Gene denotes TNF-α Gene:7124
103 817-821 Gene denotes IL-6 Gene:3569
104 826-831 Gene denotes IFN γ Gene:3458
105 706-711 Species denotes human Tax:9606
112 841-883 Gene denotes activated leukocyte-cell adhesion molecule Gene:214
113 885-890 Gene denotes ALCAM Gene:214
114 907-912 Gene denotes CD166 Gene:214
115 941-944 Gene denotes CD6 Gene:923
116 959-964 Gene denotes ALCAM Gene:214
117 982-985 Gene denotes CD6 Gene:923
138 1258-1261 Gene denotes CD6 Gene:923
139 1431-1436 Gene denotes ALCAM Gene:214
140 1441-1445 Gene denotes IL-2 Gene:3558
141 1556-1561 Gene denotes IFN-γ Gene:3458
142 1563-1567 Gene denotes IL-6 Gene:3569
143 1572-1577 Gene denotes TNF-α Gene:7124
144 1860-1864 Gene denotes IL-6 Gene:3569
145 1866-1871 Gene denotes TNF-α Gene:7124
146 1876-1881 Gene denotes IFN-γ Gene:3458
147 1252-1257 Species denotes human Tax:9606
148 1647-1655 Species denotes patients Tax:9606
149 1742-1750 Species denotes patients Tax:9606
150 2186-2194 Species denotes patients Tax:9606
151 2341-2349 Species denotes patients Tax:9606
152 1095-1105 Chemical denotes Itolizumab MESH:C000597346
153 1785-1795 Chemical denotes itolizumab MESH:C000597346
154 2076-2086 Chemical denotes itolizumab MESH:C000597346
155 1680-1689 Disease denotes psoriasis MESH:D011565
156 1763-1772 Disease denotes psoriasis MESH:D011565
157 2177-2185 Disease denotes COVID-19 MESH:C000657245
192 3103-3111 Gene denotes IFN α-2b Gene:3440
193 3411-3414 Gene denotes ALP Gene:470
194 3948-3952 Gene denotes IL-6 Gene:3569
195 4060-4064 Gene denotes IL-6 Gene:3569
196 4150-4154 Gene denotes IL-1 Gene:3553
197 4235-4262 Gene denotes aspartate amino transferase Gene:26503
198 4264-4267 Gene denotes AST Gene:26503
199 2418-2423 Species denotes woman Tax:9606
200 2801-2811 Species denotes SARS-CoV-2 Tax:2697049
201 3650-3657 Species denotes Patient Tax:9606
202 3880-3887 Species denotes patient Tax:9606
203 2910-2916 Chemical denotes oxygen MESH:D010100
204 2938-2944 Chemical denotes oxygen MESH:D010100
205 2946-2949 Chemical denotes PO2 MESH:C093415
206 2950-2954 Chemical denotes FiO2
207 3057-3076 Chemical denotes lopinavir/ritonavir MESH:C558899
208 3078-3089 Chemical denotes chloroquine MESH:D002738
209 3116-3124 Chemical denotes rocephin MESH:D002443
210 3489-3499 Chemical denotes itolizumab MESH:C000597346
211 3545-3555 Chemical denotes itolizumab MESH:C000597346
212 3562-3565 Chemical denotes PO2 MESH:C093415
213 3566-3570 Chemical denotes FiO2
214 3982-3992 Chemical denotes itolizumab MESH:C000597346
215 4423-4433 Chemical denotes itolizumab MESH:C000597346
216 2461-2473 Disease denotes hypertension MESH:D006973
217 2478-2502 Disease denotes Type 2 diabetes mellitus MESH:D003924
218 2530-2538 Disease denotes polypnea
219 2605-2614 Disease denotes dry cough MESH:D003371
220 2657-2665 Disease denotes COVID-19 MESH:C000657245
221 2714-2722 Disease denotes COVID-19 MESH:C000657245
222 2847-2856 Disease denotes hypoxemia MESH:D000860
223 2861-2882 Disease denotes respiratory alkalosis MESH:D000472
224 3198-3217 Disease denotes respiratory failure MESH:D012131
225 3358-3391 Disease denotes interstitial multifocal pneumonia
227 4509-4519 Chemical denotes itolizumab MESH:C000597346
234 4542-4552 Chemical denotes itolizumab MESH:C000597346
235 4688-4698 Chemical denotes itolizumab MESH:C000597346
236 4911-4921 Chemical denotes itolizumab MESH:C000597346
237 5038-5048 Chemical denotes itolizumab MESH:C000597346
238 4660-4676 Disease denotes pleural effusion MESH:D010996
239 4863-4879 Disease denotes pleural effusion MESH:D010996
241 5200-5207 Species denotes patient Tax:9606
246 5216-5220 Gene denotes IL-6 Gene:3569
247 5225-5228 Gene denotes AST Gene:26503
248 5287-5295 Species denotes patients Tax:9606
249 5303-5313 Chemical denotes itolizumab MESH:C000597346
303 6391-6394 Gene denotes AST Gene:26503
304 6422-6440 Gene denotes C-reactive protein Gene:1401
305 6563-6571 Gene denotes IFN α-2b Gene:3440
306 7527-7531 Gene denotes IL-6 Gene:3569
307 7642-7646 Gene denotes IL-6 Gene:3569
308 7799-7803 Gene denotes IL-6 Gene:3569
309 7847-7851 Gene denotes IL-6 Gene:3569
310 7853-7857 Gene denotes IL-1 Gene:3553
311 7938-7941 Gene denotes AST Gene:26503
312 6294-6301 Species denotes Patient Tax:9606
313 6965-6972 Species denotes patient Tax:9606
314 7239-7246 Species denotes patient Tax:9606
315 7440-7447 Species denotes patient Tax:9606
316 8093-8100 Species denotes patient Tax:9606
317 5986-5992 Chemical denotes oxygen MESH:D010100
318 6529-6548 Chemical denotes lopinavir–ritonavir MESH:C558899
319 6550-6561 Chemical denotes chloroquine MESH:D002738
320 6573-6582 Chemical denotes meropenem MESH:D000077731
321 6587-6596 Chemical denotes linezolid MESH:D000069349
322 6653-6663 Chemical denotes itolizumab MESH:C000597346
323 6795-6798 Chemical denotes PO2 MESH:C093415
324 6799-6803 Chemical denotes FiO2
325 6847-6850 Chemical denotes PO2 MESH:C093415
326 6851-6855 Chemical denotes FiO2
327 6881-6884 Chemical denotes PO2 MESH:C093415
328 7472-7482 Chemical denotes itolizumab MESH:C000597346
329 7561-7571 Chemical denotes itolizumab MESH:C000597346
330 8184-8198 Chemical denotes norepinephrine MESH:D009638
331 5390-5410 Disease denotes ischemic cardiopathy MESH:C536187
332 5422-5441 Disease denotes atrial fibrillation MESH:D001281
333 5443-5455 Disease denotes hypertension MESH:D006973
334 5460-5474 Disease denotes hypothyroidism MESH:D007037
335 5505-5515 Disease denotes alcoholism MESH:D000437
336 5594-5614 Disease denotes respiratory diseases MESH:D012140
337 5667-5686 Disease denotes shortness of breath MESH:D004417
338 5688-5693 Disease denotes fever MESH:D005334
339 5695-5703 Disease denotes asthenia MESH:D001247
340 5708-5717 Disease denotes dry cough MESH:D003371
341 5794-5802 Disease denotes COVID-19 MESH:C000657245
342 5854-5873 Disease denotes respiratory failure MESH:D012131
343 5891-5902 Disease denotes tachycardia MESH:D013610
344 5904-5912 Disease denotes polypnea
345 6165-6184 Disease denotes atrial fibrillation MESH:D001281
346 6257-6266 Disease denotes hypoxemia MESH:D000860
347 6271-6292 Disease denotes respiratory alkalosis MESH:D000472
348 6311-6323 Disease denotes leukocytosis MESH:D007964
349 7038-7062 Disease denotes alveolar hypoventilation MESH:C536281
350 7092-7104 Disease denotes pneumothorax MESH:D011030
351 7139-7151 Disease denotes pneumothorax MESH:D011030
352 8113-8135 Disease denotes myocardial dysfunction MESH:D009202
353 8140-8145 Disease denotes shock MESH:D012769
354 8222-8226 Disease denotes died MESH:D003643
355 8250-8288 Disease denotes cardiovascular and respiratory failure MESH:D012131
381 8806-8814 Gene denotes IFN α-2b Gene:3440
382 9412-9416 Gene denotes IL-6 Gene:3569
383 9489-9493 Gene denotes IL-6 Gene:3569
384 9665-9669 Gene denotes IL-1 Gene:3553
385 9674-9679 Gene denotes TNF-α Gene:7124
386 9761-9764 Gene denotes AST Gene:26503
387 8474-8481 Species denotes Patient Tax:9606
388 8901-8908 Species denotes Patient Tax:9606
389 9336-9343 Species denotes Patient Tax:9606
390 9635-9642 Species denotes patient Tax:9606
391 8711-8717 Chemical denotes Oxygen MESH:D010100
392 8756-8767 Chemical denotes ceftriaxone MESH:D002443
393 8769-8788 Chemical denotes lopinavir–ritonavir MESH:C558899
394 8790-8801 Chemical denotes chloroquine MESH:D002738
395 9017-9027 Chemical denotes itolizumab MESH:C000597346
396 9597-9607 Chemical denotes itolizumab MESH:C000597346
397 8331-8339 Disease denotes COVID-19 MESH:C000657245
398 8508-8520 Disease denotes hypertension MESH:D006973
399 8522-8539 Disease denotes diabetes mellitus MESH:D003920
400 8541-8549 Disease denotes glaucoma MESH:D005901
401 8600-8605 Disease denotes cough MESH:D003371
402 8620-8628 Disease denotes diarrhea MESH:D003967
403 8647-8662 Disease denotes viral pneumonia
404 8666-8674 Disease denotes COVID-19 MESH:C000657245
405 9204-9224 Disease denotes respiratory distress MESH:D012128
412 9884-9892 Species denotes patients Tax:9606
413 10324-10331 Species denotes patient Tax:9606
414 10031-10041 Chemical denotes itolizumab MESH:C000597346
415 9911-9919 Disease denotes COVID-19 MESH:C000657245
416 9934-9948 Disease denotes critically ill MESH:D016638
417 10204-10212 Disease denotes COVID-19 MESH:C000657245
428 10575-10579 Gene denotes IL-6 Gene:3569
429 10621-10630 Gene denotes IL-1 beta Gene:3552
430 10631-10637 Gene denotes IL-1F2 Gene:3553
431 10682-10687 Gene denotes TNF-α Gene:7124
432 10739-10743 Gene denotes IL-6 Gene:3569
433 10498-10503 Species denotes human Tax:9606
434 10569-10574 Species denotes human Tax:9606
435 10615-10620 Species denotes human Tax:9606
436 10676-10681 Species denotes human Tax:9606
437 10559-10561 CellLine denotes MN CVCL:U508
458 11311-11315 Gene denotes IL-6 Gene:3569
459 11505-11509 Gene denotes IL-6 Gene:3569
460 11592-11596 Gene denotes IL-6 Gene:3569
461 11746-11750 Gene denotes IL-6 Gene:3569
462 12002-12006 Gene denotes IL-6 Gene:3569
463 12138-12141 Gene denotes CRS Gene:7291
464 11438-11441 Gene denotes CRS Gene:7291
465 11236-11239 Gene denotes CRS Gene:7291
466 11403-11411 Species denotes patients Tax:9606
467 11546-11554 Species denotes patients Tax:9606
468 11654-11662 Species denotes patients Tax:9606
469 11827-11835 Species denotes patients Tax:9606
470 11902-11910 Species denotes patients Tax:9606
471 12034-12042 Species denotes patients Tax:9606
472 12106-12114 Species denotes patients Tax:9606
473 11849-11859 Chemical denotes itolizumab MESH:C000597346
474 11394-11402 Disease denotes COVID-19 MESH:C000657245
475 11461-11484 Disease denotes hallmark of the disease MESH:D003141
476 11537-11545 Disease denotes COVID-19 MESH:C000657245
477 11773-11781 Disease denotes COVID-19 MESH:C000657245
490 12354-12357 Gene denotes CD6 Gene:923
491 12419-12422 Gene denotes CD6 Gene:923
492 12512-12516 Gene denotes IL-6 Gene:3569
493 12518-12523 Gene denotes IFN-γ Gene:3458
494 12525-12530 Gene denotes TNF-α Gene:7124
495 12535-12540 Gene denotes IL-17 Gene:3605
496 12371-12374 Gene denotes CRS Gene:7291
497 12395-12403 Species denotes patients Tax:9606
498 12256-12264 Disease denotes COVID-19 MESH:C000657245
499 12386-12394 Disease denotes COVID-19 MESH:C000657245
500 12671-12682 Disease denotes lymphopenia MESH:D008231
501 12741-12753 Disease denotes cytotoxicity MESH:D064420
520 13013-13016 Gene denotes CD6 Gene:923
521 13163-13170 Gene denotes IFNα-2b Gene:3440
522 13208-13211 Gene denotes AST Gene:26503
523 13403-13406 Gene denotes AST Gene:26503
524 12775-12784 Species denotes SARS-CoV2 Tax:2697049
525 12785-12793 Species denotes patients Tax:9606
526 12885-12893 Species denotes patients Tax:9606
527 12951-12958 Species denotes patient Tax:9606
528 13360-13368 Species denotes patients Tax:9606
529 12971-12977 Chemical denotes oxygen MESH:D010100
530 13026-13036 Chemical denotes itolizumab MESH:C000597346
531 13126-13145 Chemical denotes lopinavir/ritonavir MESH:C558899
532 13147-13158 Chemical denotes chloroquine MESH:D002738
533 12811-12831 Disease denotes respiratory distress MESH:D012128
534 12846-12879 Disease denotes multifocal interstitial pneumonia
535 13240-13249 Disease denotes mortality MESH:D003643
536 13308-13321 Disease denotes kidney injury MESH:D058186
537 13345-13359 Disease denotes critically ill MESH:D016638
543 13708-13716 Species denotes patients Tax:9606
544 13806-13814 Species denotes patients Tax:9606
545 13500-13510 Chemical denotes Itolizumab MESH:C000597346
546 13732-13742 Chemical denotes itolizumab MESH:C000597346
547 13556-13590 Disease denotes opportunistic secondary infections MESH:D060085
562 13854-13858 Gene denotes IL-6 Gene:3569
563 13956-13960 Gene denotes IL-6 Gene:3569
564 14103-14107 Gene denotes IL-6 Gene:3569
565 14207-14211 Gene denotes IL-6 Gene:3569
566 14002-14009 Species denotes patient Tax:9606
567 14550-14557 Species denotes patient Tax:9606
568 14162-14172 Chemical denotes itolizumab MESH:C000597346
569 14010-14014 Disease denotes died MESH:D003643
570 14048-14076 Disease denotes cardiovascular complications MESH:D002318
571 14418-14444 Disease denotes hyperinflammatory syndrome MESH:D061325
572 14446-14456 Disease denotes thrombosis MESH:D013927
573 14458-14473 Disease denotes alveolar damage MESH:D055370
574 14492-14499 Disease denotes hypoxia MESH:D000860
575 14558-14562 Disease denotes died MESH:D003643
585 14695-14699 Gene denotes IL-6 Gene:3569
586 14801-14805 Gene denotes IL-6 Gene:3569
587 14655-14663 Species denotes patients Tax:9606
588 14778-14786 Species denotes Patients Tax:9606
589 14665-14675 Chemical denotes itolizumab MESH:C000597346
590 14725-14735 Chemical denotes itolizumab MESH:C000597346
591 14640-14654 Disease denotes critically ill MESH:D016638
592 15038-15047 Disease denotes mortality MESH:D003643
593 15064-15072 Disease denotes COVID-19 MESH:C000657245
596 15233-15252 Disease denotes coronavirus disease MESH:D018352
597 15254-15262 Disease denotes COVID-19 MESH:C000657245
601 15417-15420 Gene denotes CD6 Gene:923
602 15411-15416 Species denotes human Tax:9606
603 15349-15359 Chemical denotes Itolizumab MESH:C000597346
607 15525-15533 Disease denotes COVID-19 MESH:C000657245
608 15561-15581 Disease denotes respiratory distress MESH:D012128
609 15596-15629 Disease denotes multifocal interstitial pneumonia
612 15635-15643 Species denotes patients Tax:9606
613 15662-15672 Chemical denotes itolizumab MESH:C000597346
618 15739-15743 Gene denotes IL-6 Gene:3569
619 15781-15789 Species denotes patients Tax:9606
620 15708-15718 Chemical denotes Itolizumab MESH:C000597346
621 15772-15780 Disease denotes COVID-19 MESH:C000657245
623 15795-15803 Species denotes patients Tax:9606
625 15884-15894 Chemical denotes Itolizumab MESH:C000597346
628 16098-16107 Disease denotes mortality MESH:D003643
629 16124-16132 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 84-98 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T6 249-274 Phenotype denotes cytokine-release syndrome http://purl.obolibrary.org/obo/HP_0033041
T7 1680-1689 Phenotype denotes psoriasis http://purl.obolibrary.org/obo/HP_0003765
T8 1763-1772 Phenotype denotes psoriasis http://purl.obolibrary.org/obo/HP_0003765
T9 2461-2473 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T10 2478-2493 Phenotype denotes Type 2 diabetes http://purl.obolibrary.org/obo/HP_0005978
T11 2530-2538 Phenotype denotes polypnea http://purl.obolibrary.org/obo/HP_0002789
T12 2605-2614 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T13 2847-2856 Phenotype denotes hypoxemia http://purl.obolibrary.org/obo/HP_0012418
T14 2861-2882 Phenotype denotes respiratory alkalosis http://purl.obolibrary.org/obo/HP_0001950
T15 3198-3217 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T16 3382-3391 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T17 4660-4676 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T18 4863-4879 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T19 5412-5441 Phenotype denotes permanent atrial fibrillation http://purl.obolibrary.org/obo/HP_0004754
T20 5443-5455 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T21 5460-5474 Phenotype denotes hypothyroidism http://purl.obolibrary.org/obo/HP_0000821
T22 5505-5515 Phenotype denotes alcoholism http://purl.obolibrary.org/obo/HP_0030955
T23 5667-5686 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T24 5688-5693 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T25 5695-5703 Phenotype denotes asthenia http://purl.obolibrary.org/obo/HP_0025406
T26 5708-5717 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T27 5854-5873 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T28 5891-5902 Phenotype denotes tachycardia http://purl.obolibrary.org/obo/HP_0001649
T29 5904-5912 Phenotype denotes polypnea http://purl.obolibrary.org/obo/HP_0002789
T30 5965-5984 Phenotype denotes high blood pressure http://purl.obolibrary.org/obo/HP_0000822
T31 6030-6040 Phenotype denotes drowsiness http://purl.obolibrary.org/obo/HP_0002329
T32 6165-6184 Phenotype denotes atrial fibrillation http://purl.obolibrary.org/obo/HP_0005110
T33 6257-6266 Phenotype denotes hypoxemia http://purl.obolibrary.org/obo/HP_0012418
T34 6271-6292 Phenotype denotes respiratory alkalosis http://purl.obolibrary.org/obo/HP_0001950
T35 6311-6323 Phenotype denotes leukocytosis http://purl.obolibrary.org/obo/HP_0001974
T36 6714-6735 Phenotype denotes pulmonary infiltrates http://purl.obolibrary.org/obo/HP_0002113
T37 7038-7062 Phenotype denotes alveolar hypoventilation http://purl.obolibrary.org/obo/HP_0002791
T38 7067-7078 Phenotype denotes atelectasis http://purl.obolibrary.org/obo/HP_0100750
T39 7092-7104 Phenotype denotes pneumothorax http://purl.obolibrary.org/obo/HP_0002107
T40 7139-7151 Phenotype denotes pneumothorax http://purl.obolibrary.org/obo/HP_0002107
T41 8140-8145 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T42 8269-8288 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T43 8508-8520 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T44 8522-8539 Phenotype denotes diabetes mellitus http://purl.obolibrary.org/obo/HP_0000819
T45 8541-8549 Phenotype denotes glaucoma http://purl.obolibrary.org/obo/HP_0000501
T46 8600-8605 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T47 8607-8615 Phenotype denotes wheezing http://purl.obolibrary.org/obo/HP_0030828
T48 8620-8628 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T49 8653-8662 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T50 9204-9224 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T51 12671-12682 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T52 12811-12831 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T53 12870-12879 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T54 14492-14499 Phenotype denotes hypoxia http://purl.obolibrary.org/obo/HP_0012418
T55 15165-15190 Phenotype denotes cytokine-release syndrome http://purl.obolibrary.org/obo/HP_0033041
T56 15561-15581 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T57 15620-15629 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T21 0-108 Sentence denotes A group of COVID-19 patients develops severe or critical disease accompanied by the cytokine storm syndrome.
T22 109-287 Sentence denotes Cytokines are essential to the pathophysiology of disease and IL-6, IL-1 and TNF-α appear to be harmful, particularly in the context of the cytokine-release syndrome (CRS) [1,2].
T23 288-368 Sentence denotes CD6 is a membrane glycoprotein expressed primarily in mature, activated T cells.
T24 369-489 Sentence denotes Ligand binding of CD6, increases events such as adhesion, activation, proliferation, differentiation and survival [3–6].
T25 490-628 Sentence denotes In addition, CD6 mediates interaction between T cells and antigen-presenting cells, contributing to the maturation of immune synapses [6].
T26 629-836 Sentence denotes CD6-mediated costimulation contributes to the maturation of a Th1 pattern in human T cells and preferentially promotes a pro-inflammatory response characterized by the secretion of TNF-α, IL-6 and IFN γ [7].
T27 837-958 Sentence denotes The activated leukocyte-cell adhesion molecule (ALCAM), also known as CD166, has been identified as the CD6 ligand [8,9].
T28 959-1094 Sentence denotes ALCAM interaction with CD6 stabilizes the formation of the immune synapse between the lymphocytes and the antigen-presenting cells [5].
T29 1095-1270 Sentence denotes Itolizumab is a humanized monoclonal antibody developed at the Center of Molecular Immunology, in Cuba, that recognizes a region in the distal domain of the human CD6 [10,11].
T30 1271-1454 Sentence denotes The antibody reduces the expression of the intracellular proteins involved in activation and inhibits the proliferation of T cells, even in the presence of the ALCAM and IL-2 [10–12].
T31 1455-1586 Sentence denotes The effect is associated with the reduction of the secretion of pro-inflammatory cytokines including IFN-γ, IL-6 and TNF-α [13,14].
T32 1587-1698 Sentence denotes The antibody has demonstrated to be safe and efficacious in patients with moderate to severe psoriasis [15,16].
T33 1699-1890 Sentence denotes Studies from blood and tissue samples from patients with severe psoriasis showed that itolizumab reduces the proliferation of T cells and serum concentration of IL-6, TNF-α and IFN-γ [13–16].
T34 1891-1975 Sentence denotes A significant reduction of the inflammatory pattern was also observed in the tissue.
T35 1976-2225 Sentence denotes On account of its well proven effect on T-cell activation and proinflammatory cytokines production, itolizumab was included as part of a Cuban expanded access protocol in critical, severe and moderate COVID-19 patients with high risk of aggravation.
T36 2226-2373 Sentence denotes The study will be published soon (manuscript accepted) and here we describe in detail the outcome of three initial patients receiving the antibody.
T37 2375-2392 Sentence denotes Cases description
T38 2393-2403 Sentence denotes Patient 1:
T39 2404-2615 Sentence denotes A 53-year old woman with a personal history of essential hypertension and Type 2 diabetes mellitus presented with symptoms of polypnea of more than 40 rpm, use of respiratory ancillary musculature and dry cough.
T40 2616-2680 Sentence denotes She arrived from a foreign country where COVID-19 was spreading.
T41 2681-2812 Sentence denotes Symptoms started on 23 March and COVID-19 was diagnosed on 26 March on the basis of positive real time PCR (RT-PCR) for SARS-CoV-2.
T42 2813-2969 Sentence denotes Initial gasometry showed moderate hypoxemia and respiratory alkalosis with a partial pressure of oxygen/fraction of inspired oxygen (PO2/FiO2) ratio of 191.
T43 2970-3031 Sentence denotes Chest x-rays showed interstitial lesions in both lung fields.
T44 3032-3125 Sentence denotes She started therapy with lopinavir/ritonavir, chloroquine, recombinant IFN α-2b and rocephin.
T45 3126-3279 Sentence denotes In spite of treatment, the illness subsequently progressed to hypoxemic respiratory failure warranting the initiation of invasive mechanical ventilation.
T46 3280-3464 Sentence denotes At day 13 of her admission in the ICU, she showed radiologic worsening of the interstitial multifocal pneumonia, with elevation of ALP, LDH, erythrocyte sedimentation rate and D-dimer.
T47 3465-3520 Sentence denotes Physicians administered itolizumab at a dose of 200 mg.
T48 3521-3649 Sentence denotes After 48 h of the first itolizumab dose, PO2/FiO2 improved and there were evidences of radiological improvement (Figure 1A & B).
T49 3650-3756 Sentence denotes Patient was extubated after the first dose of the antibody and her status changed from critical to severe.
T50 3757-3840 Sentence denotes She received a second dose of the antibody (200 mg), 48 h after the first infusion.
T51 3841-3947 Sentence denotes 3 days after the first administration, patient was hemodynamically stable and has spontaneous ventilation.
T52 3948-4059 Sentence denotes IL-6 levels were evaluated before itolizumab administration and after 2 and 7 days of the first administration.
T53 4060-4149 Sentence denotes IL-6 levels reduced overtime from 172 pg/ml to 60 pg/ml (day 7) as depicted in Figure 2A.
T54 4150-4221 Sentence denotes IL-1 was evaluated at the same time intervals, but it was undetectable.
T55 4222-4391 Sentence denotes In addition, aspartate amino transferase (AST) concentrations were evaluated at different time points showing a reduction from 43 U/l to 24 U/l after 7 days (Figure 2B).
T56 4392-4448 Sentence denotes No adverse events related with itolizumab were reported.
T57 4449-4458 Sentence denotes Figure 1.
T58 4460-4520 Sentence denotes Radiological images before and after one dose of itolizumab.
T59 4521-4648 Sentence denotes Patient 1 (A) Before itolizumab (D0): diffuse Interstitial-alveolar infiltrate in both lung fields, predominantly in the bases.
T60 4649-4852 Sentence denotes Minor left pleural effusion. (B) After itolizumab (48 h): radiological improvement with decreased diffuse infiltrate and radio-opacity at the top of both lungs and in both lung bases, in less proportion.
T61 4853-4889 Sentence denotes The minor pleural effusion persists.
T62 4890-5162 Sentence denotes Patient 3 (C) Before itolizumab (D0): alveolar interstitial inflammatory infiltrate in both lung fields, predominantly on the right side. (D) After itolizumab (48 h): radiological improvement with significant decrease of the alveolar interstitial infiltrate of both lungs.
T63 5163-5172 Sentence denotes Figure 2.
T64 5174-5215 Sentence denotes Circulating biomarkers in patient's sera.
T65 5216-5324 Sentence denotes IL-6 and AST concentrations kinetics (A & B, respectively) measured in patients during itolizumab treatment.
T66 5325-5335 Sentence denotes Patient 2:
T67 5336-5475 Sentence denotes An 89-year old man with a personal history of chronic ischemic cardiopathy, permanent atrial fibrillation, hypertension and hypothyroidism.
T68 5476-5615 Sentence denotes He has a previous history of alcoholism and several hospital admissions in the last 3 months on account of infectious respiratory diseases.
T69 5616-5718 Sentence denotes He came to the hospital on 2 April after 7 days of shortness of breath, fever, asthenia and dry cough.
T70 5719-5817 Sentence denotes He was in contact with a person who returned from a foreign country, where COVID-19 was extending.
T71 5818-6041 Sentence denotes Physical examination shows signs of respiratory failure characterized by tachycardia, polypnea, intercostal and supraclavicular muscle retraction, high blood pressure, oxygen saturation of 82%, poor diuresis and drowsiness.
T72 6042-6140 Sentence denotes Chest x-rays showed bilateral pulmonary inflammatory infiltrates, predominantly in the right lung.
T73 6141-6293 Sentence denotes Admission ECG showed an atrial fibrillation with rapid ventricular response and the initial gasometry showed severe hypoxemia and respiratory alkalosis.
T74 6294-6441 Sentence denotes Patient also had leukocytosis, altered globular sedimentation rate as well as elevated values of AST, LDH, D-dimer and positive C-reactive protein.
T75 6442-6513 Sentence denotes He was admitted into the ICU requiring invasive mechanical ventilation.
T76 6514-6611 Sentence denotes Treatment with lopinavir–ritonavir, chloroquine, IFN α-2b, meropenem and linezolid was initiated.
T77 6612-6811 Sentence denotes 3 days after his admission into the ICU, itolizumab was prescribed, due to worsening of the bilateral pulmonary infiltrates together with a deterioration of the ventilatory function (PO2/FiO2 = 173).
T78 6812-6950 Sentence denotes After the first antibody infusion, PO2/FiO2 significantly increased (PO2/FiO2 = 320) and there were evidences of radiological improvement.
T79 6951-7121 Sentence denotes 3 days after, patient showed radiological worsening of the left lung, characterized by alveolar hypoventilation and atelectasis; then, a 70% pneumothorax was established.
T80 7122-7234 Sentence denotes Treatment of the pneumothorax with minimal pleurotomy was very demanding and required 3 days for the resolution.
T81 7235-7429 Sentence denotes The patient received a second infusion of the monoclonal antibody 72 h after the first, while a third dose was administered at the discretion of the treating physicians, 2 days after the second.
T82 7430-7526 Sentence denotes In total, patient received three doses of itolizumab (200 mg) without any related adverse event.
T83 7527-7641 Sentence denotes IL-6 levels were evaluated before itolizumab administration and after 2, 4 and 7 days of the first administration.
T84 7642-7798 Sentence denotes IL-6 was extremely high at baseline (623 pg/ml) and even though cytokine levels reduced roughly 50%, the lowest value remained above 300 pg/ml after 7 days.
T85 7799-7835 Sentence denotes IL-6 kinetics is shown in Figure 2A.
T86 7836-7909 Sentence denotes Apart from IL-6, IL-1 was undetectable at this time point of the disease.
T87 7910-8003 Sentence denotes Interesting, in the case of AST, a significant reduction is detecting at day 7 (pretreatment:
T88 8004-8016 Sentence denotes 156 U/l, D7:
T89 8017-8051 Sentence denotes 40 U/l) as is showed in Figure 2B.
T90 8052-8199 Sentence denotes After 10 days of admission into the ICU, patient presented a myocardial dysfunction and shock that required vasoactive support with norepinephrine.
T91 8200-8289 Sentence denotes On day 13, he finally died, on account of a mixed cardiovascular and respiratory failure.
T92 8290-8300 Sentence denotes Patient 3:
T93 8301-8409 Sentence denotes An 81-year old female, who is COVID-19 positive contact was not identified at the moment of hospitalization.
T94 8410-8568 Sentence denotes She started symptoms on 2 April and entered the ICU on 5 April. Patient has a previous history of hypertension, diabetes mellitus, glaucoma and smoking habit.
T95 8569-8629 Sentence denotes She was admitted with frequent cough, wheezing and diarrhea.
T96 8630-8710 Sentence denotes The diagnosis of viral pneumonia by COVID-19 was confirmed by RT-PCR on 7 April.
T97 8711-8829 Sentence denotes Oxygen support at 5 l/min and treatment with ceftriaxone, lopinavir–ritonavir, chloroquine and IFN α-2b was indicated.
T98 8830-8900 Sentence denotes Chest images showed bilateral interstitial infiltration in both lungs.
T99 8901-9006 Sentence denotes Patient condition was classified as severe, although she did not require invasive mechanical ventilation.
T100 9007-9088 Sentence denotes A dose of itolizumab (200 mg) was given the day after her admission into the ICU.
T101 9089-9335 Sentence denotes Two days after the antibody administration, together with the rest of the therapy, there was an improvement of the respiratory distress while the chest image showed a decrease of the alveolar interstitial infiltrate of both lungs (Figure 1C & D).
T102 9336-9411 Sentence denotes Patient left the ICU after a favorable clinical and radiological evolution.
T103 9412-9488 Sentence denotes IL-6 concentration was measured prior and after the antibody administration.
T104 9489-9664 Sentence denotes IL-6 level at baseline was lower than in previous cases (30 pg/ml), but also decreased 48 h and 168 h after itolizumab infusion, in parallel with patient recovery (Figure 2A).
T105 9665-9747 Sentence denotes IL-1 and TNF-α were untraceable before and 48 h after the antibody administration.
T106 9748-9856 Sentence denotes Regarding to AST concentration, the values were in the normal range during the treatment period (Figure 2B).
T107 9858-9877 Sentence denotes Materials & methods
T108 9878-10122 Sentence denotes Three patients with diagnosis of COVID-19 classified as critically ill (two) and severely ill (one) were included in an expanded access trial to receive itolizumab in addition to standard treatment (http://rpcec.sld.cu/trials/RPCEC00000311-En).
T109 10123-10257 Sentence denotes The study was approved by a central ethical review board, created especially for COVID-19 and by the Cuban Regulatory Agency (CECMED).
T110 10258-10332 Sentence denotes Before the treatment, informed consent was obtained from enrolled patient.
T111 10333-10442 Sentence denotes Laboratory results included blood routine, leucocyte subsets and blood biochemical parameters were collected.
T112 10443-10723 Sentence denotes The level of inflammatory cytokines was measured using human validated commercially available kit from R&D Systems (MN, USA): human IL-6 Quantikine ELISA Kit (Cat# S6050), human IL-1 beta/IL-1F2 Quantikine ELISA Kit (Cat# SLB50) and human TNF-α Quantikine ELISA Kit (Cat# STA00D).
T113 10724-10817 Sentence denotes In the case of IL-6, the normal range of this cytokine in sera is between 0 and 7 pg/ml [17].
T114 10818-10918 Sentence denotes We used intra-assay precision and inter-assay precision methods to evaluate precision in this study.
T115 10919-11068 Sentence denotes For intra-assay precision (precision within an assay), three samples of known concentration were tested on one plate to assess intra-assay precision.
T116 11069-11223 Sentence denotes For inter-assay precision (precision between assays), three samples of known concentration were tested in separate assays to assess inter-assay precision.
T117 11225-11235 Sentence denotes Discussion
T118 11236-11298 Sentence denotes CRS is characterized by high levels of inflammatory cytokines.
T119 11299-11381 Sentence denotes Among them, IL-6 is considered a major mediator of this hyperinflammation [18,19].
T120 11382-11490 Sentence denotes Most of the COVID-19 patients-related papers showed the CRS as one of the main hallmark of the disease [20].
T121 11491-11560 Sentence denotes Additionally, IL-6 levels predict severity in COVID-19 patients [21].
T122 11561-11663 Sentence denotes There is high heterogeneity of IL-6 values among papers for classifying severe and nonsevere patients.
T123 11664-11811 Sentence denotes In a large meta-analysis of 52 manuscripts, Elshazli and coworkers found that the IL-6 level associated with COVID-19 severity was 22.9 pg/ml [22].
T124 11812-11975 Sentence denotes In a series of patients treated with itolizumab a cutoff of 28 pg/ml discriminates severe patients from nonsevere (manuscript just accepted in Immunity and Aging).
T125 11976-12065 Sentence denotes In the present study, the IL-6 concentration of the three patients was above this cutoff.
T126 12066-12164 Sentence denotes It confirms the classification of these patients as severe and that the CRS is probably occurring.
T127 12165-12276 Sentence denotes Several anticytokine therapies have been tried for treating the hyperinflammatory phase of COVID-19 [20,23–25].
T128 12277-12404 Sentence denotes Here, we report the use of a well-known anti-inflammatory antibody targeting CD6 to treat the CRS arising in COVID-19 patients.
T129 12405-12636 Sentence denotes Using an anti-CD6 antibody could reduce the concentration of several pro-inflammatory cytokines, including IL-6, IFN-γ, TNF-α and IL-17, among others, representing an advantage as compared with single-cytokine targeting antibodies.
T130 12637-12762 Sentence denotes The antibody would not exacerbate lymphopenia since it does not induce complement or antibody dependent cytotoxicity [10,11].
T131 12763-12880 Sentence denotes These three SARS-CoV2 patients developed severe respiratory distress together with multifocal interstitial pneumonia.
T132 12881-12985 Sentence denotes Two patients required invasive mechanical ventilation while the third patient only needed oxygen supply.
T133 12986-13171 Sentence denotes They all received the anti-CD6 antibody itolizumab in combination with other drugs incorporated into the Cuban national protocol, including lopinavir/ritonavir, chloroquine and IFNα-2b.
T134 13172-13330 Sentence denotes Regarding to laboratory parameters, AST is strongly associated with mortality risk compared with other parameters, reflecting liver and kidney injury [26,27].
T135 13331-13499 Sentence denotes In our cases, critically ill patients showed a significant reduction of AST concentration after the treatment suggesting an improvement in the function of these organs.
T136 13500-13591 Sentence denotes Itolizumab was very safe and did not seem to exacerbate opportunistic secondary infections.
T137 13592-13717 Sentence denotes Unfortunately, we did no measure neither the frequency nor the total amount of circulating T cells in these initial patients.
T138 13718-13815 Sentence denotes The impact of itolizumab on circulating T cells are being implementing in new recruited patients.
T139 13816-13997 Sentence denotes Our preliminary findings support that IL-6 levels correlated with the severity of the disease and that the antibody was capable of reducing IL-6 concentration in all three subjects.
T140 13998-14077 Sentence denotes One patient died after subsequent respiratory and cardiovascular complications.
T141 14078-14182 Sentence denotes In this particular case, IL-6 concentration was extremely elevated at the moment of itolizumab infusion.
T142 14183-14300 Sentence denotes Although, the levels of IL-6 decreased during treatment, the values at 7 days kept still very high (above 300 pg/ml).
T143 14301-14381 Sentence denotes There was a transient improvement of respiratory function but it was not enough.
T144 14382-14595 Sentence denotes Presumably, the consequences of the hyperinflammatory syndrome (thrombosis, alveolar damage and severe tissue hypoxia) were irreversible at the moment of treatment and patient died as consequence of these factors.
T145 14597-14607 Sentence denotes Conclusion
T146 14608-14715 Sentence denotes In summary, in these severe and critically ill patients, itolizumab was able to reduce IL-6 concentrations.
T147 14716-14777 Sentence denotes Notably, itolizumab-related adverse events were not reported.
T148 14778-14879 Sentence denotes Patients with baseline IL-6 levels below 200 pg/ml, showed prompt clinical and radiological recovery.
T149 14880-15073 Sentence denotes We anticipate that the timely use of this anti-inflammatory antibody in combination with the appropriate antiviral and anticoagulant therapy could reduce the mortality associated with COVID-19.
T150 15074-15136 Sentence denotes The analysis of the complete-series will be published shortly.
T151 15137-15151 Sentence denotes Summary points
T152 15152-15264 Sentence denotes Inflammatory cytokine-release syndrome is associated with the progression of the coronavirus disease (COVID-19).
T153 15265-15348 Sentence denotes No current therapy has proven effective for the management of this syndrome so far.
T154 15349-15507 Sentence denotes Itolizumab is a humanized monoclonal antibody that recognizes human CD6 and its effect is associated with the reduction of pro-inflammatory cytokines release.
T155 15508-15630 Sentence denotes We present three COVID-19 cases who developed severe respiratory distress together with multifocal interstitial pneumonia.
T156 15631-15707 Sentence denotes The patients were treated with itolizumab combined with antiviral therapies.
T157 15708-15790 Sentence denotes Itolizumab reduced circulating IL-6 concentrations in the three COVID-19 patients.
T158 15791-15883 Sentence denotes Two patients showed rapid ventilatory and radiological improvement and were fully recovered.
T159 15884-15936 Sentence denotes Itolizumab-related adverse events were not reported.
T160 15937-16133 Sentence denotes These cases show that the timely use of this anti-inflammatory antibody in combination with the appropriate antiviral and anticoagulant therapy could reduce the mortality associated with COVID-19.